Coupling Metaproteomics With Taxonomy To Determine Responses Of Bacterioplankton To Organic Perturbations In The Western Arctic Ocean,
2019
Old Dominion University
Coupling Metaproteomics With Taxonomy To Determine Responses Of Bacterioplankton To Organic Perturbations In The Western Arctic Ocean, Molly P. Mikan
OES Theses and Dissertations
Understanding how the functionality of marine microbial communities change over time and space, and which taxonomic groups dominate distinct metabolic pathways, are essential to understanding the ecology of these microbiomes and the factors contributing to their regulation of elemental cycles in the oceans. The primary goal of this dissertation was to investigate the community metabolic and taxonomic responses and the degradation potential of two compositionally distinct marine microbiomes within the shallow shelf ecosystem of the Chukchi Sea after rapid fluctuations in algal organic matter availability. Novel bioinformatics tools were collaboratively developed and used together with community proteomics (metaproteomics) to characterize …
Spatiotemporal Variation Of Benthic Silica Fluxes In The Ngom Shelf,
2019
Louisiana State University
Spatiotemporal Variation Of Benthic Silica Fluxes In The Ngom Shelf, Byron Ebner
LSU Master's Theses
Dissolved silica (DSi), plays an important role in regulating primary productivity of silicifying organisms, such as diatoms which precipitate hard parts composed of biogenic silica (bSi) in coastal and shelf ecosystems fed by major rivers. In the Northern Gulf of Mexico (NGOM), loading of nitrogen and phosphorous have increased compared to a decline in DSi in the Mississippi River. Continued decreasing in DSi loading could lead to limited diatom growth and production or shifts in community composition, therefore, it is important understand the role of benthic fluxes in providing silica to the overlying water column as there are few regional …
Data For Paper "Microbial Generation Of Elemental Mercury From Dissolved Methylmercury In Seawater",
2019
SUNY Stony Brook
Data For Paper "Microbial Generation Of Elemental Mercury From Dissolved Methylmercury In Seawater", Cheng-Shiuan Lee, Nicholas S. Fisher
SoMAS Research Data
Elemental mercury (Hg0) formation from other mercury species in seawater results from photoreduction and microbial activity, leading to possible evasion from seawater to overlying air. Microbial conversion of monomethylmercury (MeHg) to Hg0 in seawater remains unquantified. A rapid radioassay method was developed using gamma-emitting 203Hg as a tracer to evaluate Hg0 production from Hg(II) and MeHg in the low pM range. Bacterioplankton assemblages in Atlantic surface seawater and Long Island Sound water were found to rapidly produce Hg0, with production rate constants being directly related to bacterial biomass and independent of dissolved Hg(II) and MeHg …
Iron Mediated Organic Preservation In A River Influenced Continental Margin,
2019
Louisiana State University
Iron Mediated Organic Preservation In A River Influenced Continental Margin, Neha Ajit Ghaisas
LSU Doctoral Dissertations
Continental margins such as the Mississippi river influenced Louisiana shelf (MIS), are important land-ocean interfaces where excessive water column productivity and rapid burial results in large amounts of organic carbon (OC) being sequestered in the sediments. The preservation of OC in sediments is controlled by a number of processes among which mineral-OC interactions are considered to be more important. Specifically, the interactions between sediment iron (Fe) species and OC have been shown to promote carbon preservation. However, the exact nature of preservation mechanism is not well understood and is based on limited global data, which specifically lacks estimates from large …
Evaluating Seasonal Nutrient Fluxes In Emerging And Eroding Wetlands Of The Louisiana Delta Plain,
2019
Louisiana State University and Agricultural and Mechanical College
Evaluating Seasonal Nutrient Fluxes In Emerging And Eroding Wetlands Of The Louisiana Delta Plain, Kiran Upreti
LSU Doctoral Dissertations
Deltaic wetlands can ameliorate high NO3- loads via denitrification, a dominant NO3- reduction pathway in inland and coastal habitats. Dissimilatory Nitrate Reduction to Ammonia (DNRA), in contrast to denitrification, conserves N within the system and has been found to be favored over denitrification with increase in salinity and temperature. There are no studies in the Louisiana Deltaic plain with simultaneous estimation of denitrification and DNRA. Increased P availability has been shown to increase denitrification so it is essential to understand P biogeochemistry when studying N cycle. Here, we evaluated net denitrification using N2:Ar and …
Soil Macroinvertebrate Presence Alters Microbial Community Composition And Activity In The Rhizosphere,
2019
Cornell University
Soil Macroinvertebrate Presence Alters Microbial Community Composition And Activity In The Rhizosphere, Natalie Bray, Jenny Kao-Kniffin, Serita D. Frey, Timothy Fahey, Kyle Wickings
Faculty Publications
Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Restoration Of Soil Microbial Function Following Degradation On Department Of Defense Lands: Mediating Biological Invasions In A Global Change Context,
2019
University of Massachusetts, Amherst
Restoration Of Soil Microbial Function Following Degradation On Department Of Defense Lands: Mediating Biological Invasions In A Global Change Context, Kristina Stinson, Serita D. Frey
Faculty Publications
This project was designed to better understand the roles of soil biota in 1 mediating native species-NIS interactions and 2 facilitating the recovery of degraded ecosystems. The associated Research Needs were listed as follows 1. To quantify the functional diversity of soil biota and the role of key taxa in maintaining desired functional ecosystem attributes 2. To identify processes by which desired soil properties and associated soil biotic communities are degraded by NIS invasion and test potential mechanisms to restore them 3. To examine the role of disturbance in determining the functional attributes of the soil community 4. To test …
The Microbiome Stress Project: Toward A Global Meta-Analysis Of Environmental Stressors And Their Effects On Microbial Communities,
2019
Duke University
The Microbiome Stress Project: Toward A Global Meta-Analysis Of Environmental Stressors And Their Effects On Microbial Communities, Jennifer D. Rocca, Marie Simonin, Joanna R. Blaszczak, Jessica G. Ernakovich, Sean M. Gibbons, Firas S. Midani, Alex D. Washburne
Faculty Publications
Microbial community structure is highly sensitive to natural (e.g., drought, temperature, fire) and anthropogenic (e.g., heavy metal exposure, land-use change) stressors. However, despite an immense amount of data generated, systematic, cross-environment analyses of microbiome responses to multiple disturbances are lacking. Here, we present the Microbiome Stress Project, an open-access database of environmental and host-associated 16S rRNA amplicon sequencing studies collected to facilitate cross-study analyses of microbiome responses to stressors. This database will comprise published and unpublished datasets re-processed from the raw sequences into exact sequence variants using our standardized computational pipeline. Our database will provide insight into general response patterns …
Characterizing Freshwater Phytoplankton Dynamics With Electro-Optical Remote Sensing,
2019
Michigan Technological University
Characterizing Freshwater Phytoplankton Dynamics With Electro-Optical Remote Sensing, Michael Sayers
Dissertations, Master's Theses and Master's Reports
Freshwater lakes are an important component contributing to ecosystem health and biodiversity on local, regional, and global scales. And while lakes only represent <5% of the global surface area, they are often very productive systems which contribute significantly to carbon cycling dynamics and freshwater fish production on a number of spatial scales. Due to the remote location and sheer size of some of these lakes it has proven difficult to adequately document changes in water quality. Significant challenges exist to adequately monitor water quality, and in particular phytoplankton dynamics, over large spatial and temporal scales using traditional in situ methods. Satellite electro-optical remote sensing offers a potential tool to provide better characterization of phytoplankton dynamics for a variety of freshwater systems. This work resulted in an approach to quantify global summer phytoplankton abundance using a newly developed remote sensing derived chlorophyll-a product. This product was also used in conjunction with a newly created carbon fixation model to assess global freshwater phytoplankton production which provided new insights into the role freshwater systems play in the …
Spatiotemporal Dynamics Of Nitrogen And Carbon Biogeochemistry In A Wetland-Stream Sequence,
2019
University of Montana
Spatiotemporal Dynamics Of Nitrogen And Carbon Biogeochemistry In A Wetland-Stream Sequence, Patrick E. Hurley
Graduate Student Theses, Dissertations, & Professional Papers
Studies of aquatic ecosystems often segregate streams from the influential ponds, lakes, and wetland zones that act as important transitions between terrestrial and fluvial systems. Across the aquatic landscape, these zones interact to form linked ecosystems that function as discrete nutrient processing domains, shifting biogeochemical signals due to spatial and temporal variability in hydrologic and biologic controls. Using a mass-balance approach, we profiled nutrient dynamics along a 23-km wetland-stream sequence over three seasons. Hydrologic, morphologic, and biologic conditions, as well as landscape attributes, were quantified to determine potential controls on biogeochemical cycling in a tributary of the Upper Clark Fork …
Carbon In The Deep Biosphere: Forms, Fates, And Biogeochemical Cycling,
2019
University of South Carolina - Columbia
Carbon In The Deep Biosphere: Forms, Fates, And Biogeochemical Cycling, Susan Q. Lang, Magdalena R. Osburn, Andrew D. Steen
Faculty Publications
Building on the synthesis of carbon reservoirs in Earth's subsurface, this chapter focuses on the forms, cycling, and fate of the carbon supporting microbial life in the terrestrial and marine subsurface. As the subsurface is estimated to host a vast reservoir of life on Earth, identifying the carbon compounds that life uses for energy and growth is key to understanding ecosystem functioning in the past and at present, and also for extrapolating these findings to the search for life in the universe. This chapter highlights advances in quantifying small carbon compounds, measuring rates of carbon turnover, and the fate of …
Resuscitation Of Microalgae From Mississippi River Plume Sediments,
2019
Auburn University
Resuscitation Of Microalgae From Mississippi River Plume Sediments, Chase C. Chaplin, Marnie Tabor, Israel A. Marquez, Kanchan Maiti, Jeffrey W. Krause
Gulf and Caribbean Research
No abstract provided.
Compositions And Structures Of Particulate And Colloidal Organic Matter In Aquatic Environment By Advanced Analytical Techniques,
2019
Guangzhou Institute of Geochemistry
Compositions And Structures Of Particulate And Colloidal Organic Matter In Aquatic Environment By Advanced Analytical Techniques, Yong Ran, Dainan Zhang, Shujie Hu, Yu Yang, Jingdong Mao
Chemistry & Biochemistry Faculty Publications
Dissolved, colloidal and particulate organic matter (DOM, COM and POM) is important in the global carbon cycle and knowledge of their sources and structures can be critical to understanding their roles in biogeochemical cycles. This study explored the sources and chemical structures of COM and POM samples from the Pearl River Basin, China by elemental, chlorophyll a (Chl a), radiocarbon and stable carbon isotopic analyses, NMR techniques, and Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) analysis. The chemical and nano-sclae structures of two ultrafiltered dissolved organic matter (UDOM) samples from surface seawater of the Pacific and Atlantic Ocean …
Seasonal Soil Carbon Fluxes In Transitioning Agricultural Soils In Central Washington State: Relations To Land-Use, Environmental Factors And Soil Carbon-Nitrogen Characteristics,
2019
Central Washington University
Seasonal Soil Carbon Fluxes In Transitioning Agricultural Soils In Central Washington State: Relations To Land-Use, Environmental Factors And Soil Carbon-Nitrogen Characteristics, Brandon Kautzman
All Master's Theses
Changing agricultural land-use practices to increase soil carbon sequestration contributes to climate change mitigation and improved food security by moving CO2 from the atmosphere into soil as soil organic carbon (SOC). In 2016, a farm in Thorp, Washington, Spoon Full Farm, began converting land historically farmed using conventional methods of tillage and synthetic fertilizers to conservation farming methods with direct seeding and organic soil amendments with a goal of sequestering carbon in the soil. This project evaluates relationships of soil CO2 respiration and net ecological exchange (NEE) with land-use types, seasonal environmental factors (air temperature, relative humidity, soil …
Biogeochemical Response To Vegetation And Hydrologic Change In An Alaskan Boreal Fen Ecosystem,
2019
Michigan Technological University
Biogeochemical Response To Vegetation And Hydrologic Change In An Alaskan Boreal Fen Ecosystem, Danielle L. Rupp
Dissertations, Master's Theses and Master's Reports
Boreal peatlands store approximately one third of the earth’s terrestrial carbon, locked away in currently waterlogged and frozen conditions. Peatlands of boreal and arctic ecosystems are affected increasingly by shifting hydrology caused by climate change. The consequences of these relatively rapid ecosystem changes on carbon cycling between the landscape and the atmosphere could provide an amplifying feedback to climate warming. Alternatively, the advancement of terrestrial vegetation into once waterlogged soils could uptake carbon as a sink. Previous work suggests that fens will become an increasingly dominant landscape feature in the boreal. However, studies investigating fens, their response to hydrologic and …
Colloidal And Truly Dissolved Metal(Loid)S In Wastewater Lagoons And Their Removal With Floating Treatment Wetlands,
2019
University of Montana
Colloidal And Truly Dissolved Metal(Loid)S In Wastewater Lagoons And Their Removal With Floating Treatment Wetlands, Lauren Sullivan
Graduate Student Theses, Dissertations, & Professional Papers
Climate change is predicted to cause continuing declines in late-season streamflow, thus increasing the relative contribution of wastewater effluent to surface water flows. Wastewater effluent represents a critical point source of metal and metalloid contamination to aquatic ecosystems and wastewater lagoons are the most common wastewater treatment system in the rural United States. Although the fraction of total wastewater metals and metalloids in "dissolved" forms (defined here asnm) likely drives the potential for negative effects on receiving waters, this broad operational definition lumps truly dissolved solutes (nm) with small colloids and nanomaterials (1-450 nm; hereafter colloids). This size distinction may …
Using Paleolimnology To Establish Baseline Conditions For Metal Contaminants In Advance Of Proposed Mining To Inform A Northern Community-Led Aquatic Monitoring Program, Tłı̨Chǫ Lands, Northwest Territories, Canada.,
2019
Wilfrid Laurier University
Using Paleolimnology To Establish Baseline Conditions For Metal Contaminants In Advance Of Proposed Mining To Inform A Northern Community-Led Aquatic Monitoring Program, Tłı̨Chǫ Lands, Northwest Territories, Canada., James Telford
Theses and Dissertations (Comprehensive)
The Marian Watershed Stewardship Program (MWSP), a community-driven aquatic ecosystem monitoring program, was developed by the Tłı̨chǫ Government to address concerns regarding the cumulative impacts of multiple potential stressors. In particular, the MWSP aims to develop methods that will be effective for detecting potential pollution from the proposed cobalt-gold-copper-bismuth NICO mine within Tłı̨chǫ Lands. In collaboration with the MWSP, paleolimnological methods and geochemical normalization are used to establish pre-mine baselines of lake sediment metals concentrations in the Marian River watershed prior to mine development. This baseline framework can be used to assess for pollution from surficial sediment once the mine …
Influence Of Ligand Complexation On Nickel Toxicity, Speciation And Bioavailability In Marine Waters,
2019
Wilfrid Laurier University
Influence Of Ligand Complexation On Nickel Toxicity, Speciation And Bioavailability In Marine Waters, Samantha Sherman
Theses and Dissertations (Comprehensive)
Currently there are no site-specific bioavailability-based prediction models for assessing the impacts of nickel (Ni) in marine environments although there are indications that these may be warranted. The aim of this research was to characterize the complexation of Ni in relation to toxicity and speciation. Various complexing ligands were used, and it was predicted that the binding affinity (logKf) of ligands would be inversely correlated to toxicity based on dissolved Ni concentrations ([NiD]) but that on a free ion concentration ([Ni2+]) basis, toxicity would not vary. A two-phased approach was used; the first was a proof of principle where synthetic …
Fishers' Ecological Knowledge And Stable Isotope Analysis: A Social-Ecological Systems Approach To Endangered Species Conservation,
2019
University of Texas at El Paso
Fishers' Ecological Knowledge And Stable Isotope Analysis: A Social-Ecological Systems Approach To Endangered Species Conservation, Kathryn Rose Wedemeyer-Strombel
Open Access Theses & Dissertations
Identifying developmental habitat is essential for understanding population structure and species resiliency, especially for critically endangered species. In long-lived, oceanic, migratory animals such as sea turtles, elucidating developmental grounds is particularly difficult. When data are deficient or challenging to acquire, scientists often lean towards traditional quantitative methods when a social-ecological systems approach could better provide crucial baseline data and guiding information. Fishers ecological knowledge (FEK), the combination of experiential and culturally transmitted knowledge, is expert knowledge and should be treated as such. In 2008, FEK led to the rediscovery of the critically endangered eastern Pacific (EP) population of hawksbill sea …
Utilizing Lipid Biomarkers To Understand The Microbial Community Structure Of Deep Subsurface Black Shale Formations,
2019
West Virginia University
Utilizing Lipid Biomarkers To Understand The Microbial Community Structure Of Deep Subsurface Black Shale Formations, Rawlings Akondi
Graduate Theses, Dissertations, and Problem Reports (ETD)
The deep subsurface environment has been known to host microbes as early as 1926 and has also been suggested to potentially account for as much as 50% of the Earth`s biomass. Researchers have shown that microbes alter their membrane lipid components in response to physiological stress, producing stress indicative lipid biomarkers. However, little effort has been made to understand the subsurface microbial community of the shale ecosystem which is increasingly being exploited and altered by addition of drilling and hydraulic fluids to meet our growing energy needs. Phospholipid fatty acids (PLFAs) are microbial lipid biomarkers and are found in all …
