Biogeochemistry Commons^™

Pesticide Seed Treatments Containing Neonicotinoids Have Limited Effect On Soil Microbial Community Structure Under Different Tillage Regimes, Jessica E. Mackay, Richard G. Smith, Jessica G. Ernakovich, Lukas T. Bernhardt

Faculty Publications

Pesticide seed treatments (PST) which contain fungicides and insecticides are commonly used in agriculture; however, little is known about their effect on soil microbial communities and soil health. Neonicotinoids – controversial insecticides which are common in PST – have received criticism due to potential non-target effects. While fungal pathogens need to be moderated, PST have the potential to disturb broader fungal communities which could lead to reduced nutrient cycling and poor soil health. Given the broad use of PST, their effect on soil fungi needs to be studied within the context of other agricultural management practices. For example, tillage regimes …

Reconstructing Energy Flow Through Modern And Historical Marine Communities: Insights From Amino Acid Isotope Analysis, Emma A. Elliott Smith

Biology ETDs

The fundamental currency of life is energy. Organisms need energy to grow, to survive and to reproduce. Understanding the acquisition of energy by consumers is thus a foundational aspect of biological research. This is especially important in the modern era, as impacts of ongoing anthropogenic effects will be mediated or amplified through food webs. Here, I explore how isotopic analysis of individual amino acids – a technique new to ecological studies – can be used to trace energy flow through animal communities in modern and ancient time periods. In particular, I focus on kelp forest food webs, which are nearshore …

Employing Earth Observations And Artificial Intelligence To Address Key Global Environmental Challenges In Service Of The Sdgs, Wenzhao Li

Computational and Data Sciences (PhD) Dissertations

Earth Observation (EO) data provides the capability to integrate data from multiple sources and helps to produce more relevant, frequent, and accurate information about complex processes. EO, empowered by methodologies from Artificial Intelligence (AI), supports various aspects of the UN’s Sustainable Development Goals (SDGs). This dissertation presents author’s major studies using EO to fill in knowledge gaps and develop methodologies and cloud-based applications in selected SDGs, including SDG 6 (Clean Water and Sanitation), SDG 11 (Sustainable Cities and Communities), SDG 14 (Life below Water) and SDG 15 (Life on Land). For SDG 6, the study focuses on spatiotemporal water recharge …

Growth Phase Proteomics Of The Heterotrophic Marine Bacterium Ruegeria Pomeroyi, Dasha Krayushkina, Emma Timmins-Schiffman, Jessica Faux, Damon H. May, Michael Riffle, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

The heterotrophic marine bacterium, Ruegeria pomeroyi, was experimentally cultured under environmentally realistic carbon conditions and with a tracer-level addition of ¹³C-labeled leucine to track bacterial protein biosynthesis through growth phases. A combination of methods allowed observation of real-time bacterial protein production to understand metabolic priorities through the different growth phases. Over 2000 proteins were identified in each experimental culture from exponential and stationary growth phases. Within two hours of the ¹³C-labeled leucine addition, R. pomeroyi significantly assimilated the newly encountered substrate into new proteins. This dataset provides a fundamental baseline for understanding growth phase differences in molecular …

An Investigation Of Metal Sulfides As The Source Of The Low Emissivity Anomaly On The Highlands Of Venus, Sara Taeko Port

Graduate Theses and Dissertations

Since its detection in the 1960s the source of the unusual radar emissivity signal seen on several highlands on Venus has long eluded researchers. Researchers have determined that a mineral with a high dielectric constant could explain the signal. Using a Venus simulation chamber, we experimentally investigated this enigma to build upon the candidate mineral list that has been compiled over the last several decades. We tested the stability of 8 different minerals and elements at two to three different temperature/pressure regimes in three different gas mixtures meant to simulate the conditions found on Venus for a period of no …

Reconstructing Geographic And Trophic Histories Of Fish Using Bulk And Compound-Specific Stable Isotopes From Eye Lenses, Amy A. Wallace

USF Tampa Graduate Theses and Dissertations

The present research examined the viability and utility of eye lenses as a source of lifetime stable-isotope records in fish. It is presented in three sections. The first section compared bulk isotopic variation (bulk analysis) within fish eye-lenses at two temporal resolutions and compared patterns obtained from left and right eyes. The first temporal resolution was lower in an attempt to expose broad-scale isotopic changes during life while reducing effort and cost. This approach did reveal lifetime patterns, but tended to miss certain life events, particularly during early life. The second resolution was higher and provided detail that was missed …

Closing The Oxygen Mass Balance In Shallow Coastal Ecosystems, Matthew H. Long, Jennie E. Rheuban, Daniel C. Mccorkle, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

The oxygen concentration in marine ecosystems is influenced by production and consumption in the water column and fluxes across both the atmosphere-water and benthic-water boundaries. Each of these fluxes has the potential to be significant in shallow ecosystems due to high fluxes and low water volumes. This study evaluated the contributions of these three fluxes to the oxygen budget in two contrasting ecosystems, a Zostera marina (eelgrass) meadow in Virginia, U.S.A., and a coral reef in Bermuda. Benthic oxygen fluxes were evaluated by eddy covariance. Water column oxygen production and consumption were measured using an automated water incubation system. Atmosphere-water …

Magnetite Magnetosome Biomineralization In Magnetospirillum Magneticum Strain Amb-1: A Time Course Study, Lucas Le Nagard, Xiaohui Zhu, Hao Yuan, Karim Benzerara, Dennis A. Bazylinski, Cécile Fradin, Adrien Besson, Sufal Swaraj, Stefan Stanescu, Rachid Belkhou, Adam P. Hitchcock

Life Sciences Faculty Research

Magnetotactic bacteria are a highly studied group of diverse prokaryotes that biomineralize chains of magnetosomes, single domain, single crystal magnetic nanoparticles of magnetite or greigite, enclosed by a lipid bilayer membrane whose synthesis is under strict genetic control.

A Numerical Investigation Of Sediment Dynamics In The Northern Gulf Of Mexico In Connection With Hurricanes, Fluid Mud, Climate Change, And Biogeochemical Cycling, Zhengchen Zang

LSU Doctoral Dissertations

Sediment transport and deposition in marginal seas is jointly controlled by many factors including hydrodynamics, fluvial inputs, and the characteristics of sediment particles. This dissertation study employs the coupled ocean-atmosphere-wave-and-sediment transport modeling system (COAWST) to investigate the mechanism of sediment transport in the northern Gulf of Mexico (nGoM) on different temporal scales, as well as its interaction with biogeochemical processes.

First of all, a three-way coupled (atmosphere-wave-ocean) hurricane model reproduced the hydro- and sediment dynamics during hurricane Gustav (2008). Intensive alongshore and offshore currents were simulated on the eastern/western sectors of hurricane track, respectively. High suspended sediment concentration (SSC) was …

Short Term Effects Of Hurricane Irma And Cyanobacterial Blooms On Ammonium Cycling Along A Freshwater-Estuarine Continuum In South Florida, Justyna J. Hampel, Mark J. Mccarthy, Megan H. Reed, Silvia E. Newell

Faculty Publications

Lacustrine and coastal systems are vulnerable to the increasing number and intensity of tropical storms driven by climate change. Strong winds associated with tropical storms can mobilize nutrients in sediments and alter nitrogen and phosphorus cycling, leading to amplification of preexisting conditions, such as eutrophication and cyanobacterial blooms (cyanoHABs). In 2016, Florida declared a State of Emergency within and downstream of Lake Okeechobee (LO) due to toxic cyanobacterial blooms (primarily Microcystis). The blooms originated in LO, but flood control measures released water from LO to the brackish St. Lucie Estuary (SLE). In September 2017, Hurricane Irma traversed the Florida …

Quantifying Distribution In Carbon Uptake Across A Global Measurement Network Of Terrestrial Ecosystems, John Zobitz, Madeline Oswood

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Egestion Versus Excretion: A Meta-Analysis Examining Nutrient Release Rates And Ratios Across Freshwater Fauna, Halvor Halvorson, Carla Atkinson

Faculty Publications

In aquatic settings, animals directly affect ecosystem functions through excretion of dissolved nutrients. However, the comparative role of egestion as an animal-mediated nutrient flux remains understudied. We conducted a literature survey and meta-analysis to directly compare nitrogen (N), phosphorus (P), and N:P of egestion compared to excretion rates and ratios across freshwater animals. Synthesizing 215 datasets across 47 animal species (all primary consumers or omnivores), we show that the total N and P egestion rates exceed inorganic N and P excretion rates but not total N and P excretion rates, and that proportions of P egested compared to excreted depend …

Hypoxia In Mangroves: Occurrence And Impact On Valuable Tropical Fish Habitat, Alexia Dubuc, Ronald Baker, Cyril Marchand, Nathan Waltham, Marcus Sheaves

School of Marine and Environmental Sciences Faculty and Staff Publications and Presentations

Intertidal mangrove forests are harsh environments that can naturally experience hypoxia in association with low tide. However, we know relatively little about dissolved oxygen (DO) fluctuations and DO-induced responses by fish, although DO is a fundamental water quality parameter. This study examines DO as a potential factor regulating the utilization of intertidal mangrove forests by fish and consequently their widely recognized feeding, refuge and nursery values. We deployed underwater video cameras, coupled with DO and depth loggers, in a mangrove forest to record changes in fish assemblages in response to tidal variations in DO and other associated environmental parameters. Our …

Genesis Of Iron And Manganese Sediments In Zoloushka Cave (Ukraine/Moldova) As Revealed By Δ13C Organic Carbon, Piotr Kotula, Viacheslav Andreychouk, Jacek Pawlyta, Leszek Marynowski, Izabela Jendrzejewska

International Journal of Speleology

Zoloushka Cave is one of the largest maze gypsum caves in the world. Mining of the gypsum bedrock and lowering of the water level due to the pumping of groundwater led to exposure of the cave passages to vadose conditions and changed the hydrochemistry of the karst water. As a result, large quantities of Fe and Mn hydroxides were deposited in the passages. It was found that at least two groups of various organisms were involved in depositing ferrous and manganese sediments. In order to establish the mechanism of deposition, we conducted chemical analyses of the sediments and isotopic analyses …

Understanding The Behavior Of Sulfidic Colloids In The Presence Of Metals, Daniel Zamudio, Alex Quyenvo, Vincent Noël, John Bargar

STAR Program Research Presentations

Riverton, Wyoming was host to a former uranium and vanadium ore processing plant, which operated from 1958 to 1963. The milling operations at the site contaminated the surface and shallow groundwater. The area became a Department of Energy (DOE) legacy site, where the U.S. Nuclear Regulatory Commission approved the DOE’s natural flushing compliance strategy. Up until the flooding in 2010, the natural flushing compliance strategy was going underway as expected. Sampling after the flood revealed a significant increase in contaminant concentration.

New updated models need to be developed to help understand the situation at Riverton, for which this laboratory experiment …

Small Soil C Cycle Responses To Three Years Of Cover Crops In Maize Cropping Systems, Anna M. Cates, Matthew D. Ruark, A. Stuart Grandy, Randall D. Jackson

Faculty Publications

Cover crops are touted for their ability to improve many ecosystem functions in annual cropping systems. In addition to water and nutrient retention, cover crops may influence C cycling by increasing total C inputs to the agroecosystem, stimulating microbial populations, altering main crop residue decomposition rate, or changing litter chemistry over time. We assessed whether annual (rye) or perennial (bluegrass) cover crops in maize cropping systems influenced maize residue decomposition (litterbags) or microbial communities (shotgun metagenomics) in soil and litter, and whether these cover crops had an effect on microbially active pools of C: particulate organic matter (POM) C and …

Assessing Diagenetic Conditions In The Late Triassic Chinle Formation Through Petrographic And Geochemical Analysis Of Phytosaur Teeth, John Fortner

Earth Sciences Theses and Dissertations

The Upper Triassic (Norian; ~227-208 Ma) Chinle Formation of Petrified Forest (PeFo) National Park was deposited during a time of major tectonic breakup and profound changes in atmospheric circulation and faunal compositions. Little has been done however to assess whether surficial paleoenvironmental trends related to deterioration of the Late Triassic Megamonsoon resulted in similar trends in the early diagenetic environment. Here, we use phytosaur tooth dentin as a proxy for diagenetic conditions in the Chinle of PEFO, as its greater susceptibility to chemical alteration relative to enamel makes it an excellent substrate from which changing diagenetic conditions may be studied …

The Role Of A Permeable Sand Column In Modifying Tidal Creek Geochemistry And Land-Derived Inputs To The Coastal Ocean, Nicholas Anthony Legut

Electronic Theses and Dissertations

The impairment of regional water quality in Long Bay is an episodic occurrence that has been documented for over a decade. According to one explanation, the occurrence of these events is hypothesized to be the combination of local, terrestrially derived inputs and water-column stratification in the nearshore zone. A portion of these inputs may discharge as surface run-off through estuaries ending in sandy transitional environments termed "swashes". An investigation into the fate of land-derived materials through swashes utilize a linear conservative mixing model to describe the non-conservative behavior of materials in the overlying water and pore-water. This model relies on …

Biogeochemical Controls Of Surface Ocean Phosphate, Adam C. Martiny, Michael W. Lomas, Weiwei Fu, Philip W. Boyd, Yuh-Ling L. Chen, Gregory A. Cutter, Michael J. Ellwood, Ken Furuya, Fuminori Hasshihama, Jota Kanda, David M. Karl, Taketoshi Kodama, Qian P. Li, Jian Ma, Thierry Moutin, E. Malcolm S. Woodward, J. Keith Moore

OES Faculty Publications

Surface ocean phosphate is commonly below the standard analytical detection limits, leading to an incomplete picture of the global variation and biogeochemical role of phosphate. A global compilation of phosphate measured using high-sensitivity methods revealed several previously unrecognized low-phosphate areas and clear regional differences. Both observational climatologies and Earth system models (ESMs) systematically overestimated surface phosphate. Furthermore, ESMs misrepresented the relationships between phosphate, phytoplankton biomass, and primary productivity. Atmospheric iron input and nitrogen fixation are known important controls on surface phosphate, but model simulations showed that differences in the iron-to-macronutrient ratio in the vertical nutrient supply and surface lateral transport …

Agriculture, Ecosystems & Environment, William A. Arigiroff, Donald R. Zak, Rima A. Upchurch, Sydney O. Salley, A. Stuart Grandy

Faculty Publications

Fine root litter is a primary source of soil organic matter (SOM), which is a globally important pool of C that is responsive to climate change. We previously established that ~20 years of experimental nitrogen (N) deposition has slowed fine root decay and increased the storage of soil carbon (C; +18%) across a widespread northern hardwood forest ecosystem. However, the microbial mechanisms that have directly slowed fine root decay are unknown. Here, we show that experimental N deposition has decreased the relative abundance of Agaricales fungi (−31%) and increased that of partially ligninolytic Actinobacteria (+24%) on decaying fine roots. Moreover, …