Oceanography Commons^™

Tidal-, Wind-, And Buoyancy-Driven Dynamics In The Barataria Estuary And Its Impact On Estuarine-Shelf Exchange Processes, Linlin Cui

LSU Doctoral Dissertations

A three-dimensional, high-resolution, Finite-Volume Coastal Ocean Model (FVCOM) was used to study the dynamics of Barataria Estuary located in the Southeastern Louisiana. Three numerical experiments with different discharge scenarios, including the actual discharge (average ~ 160 m³ s^-1) from the Davis Pond Diversion (DPD) over three months from April to June 2010, no discharge (NO), and the proposed Mid-Barataria Diversion (MBD) with a constant discharge of 850 m³ s^-1, were conducted to investigate the impacts of river diversions on salinity gradients and residence times in the estuary. The three-month average salinity indicated that surface …

The Influence Of Habitat Preference On Longitudinal Population Composition And Distribution Of Groupers (Serranidae) In Chumbe Island Coral Park, Zanzibar Tanzania, Caroline Daley

Independent Study Project (ISP) Collection

A survey of six common grouper (Serranidae) species was conducted on both the western protected and eastern unprotected reefs around Chumbe Island. Species, estimated maturity, and fundamental niche and general habitat preference was extrapolated based on observed realized niche and qualified according to substrate, depth, slope position, and general reef region. Abundance, biomass density, and biodiversity of Serranid populations were compared among locations on the reef with habitat preference in mind in order to best assess how habitat influences population composition, distribution, and health. The results of this study provide depth to previous research on the protected reef and indicate …

Correlations Between Reef Health And Vertical Zonation On Ushongo Village Reef And Fungu Zinga Reef, Daniel Gates

Independent Study Project (ISP) Collection

While the existence of vertical zonation on coral reefs is well-known, the driving mechanisms and the influence each has is not clear. This study seeks to investigate the influence of reef health on vertical zonation. Reef health is used as a potential factor since it is essentially a broad description of reef diversity. Therefore, a healthy reef which is very diverse is likely to have more and different interspecies interactions than an unhealthy one. This project investigates whether these altered interactions results in different depth distributions of various coral types, categorized broadly by colony shape. Reef health did not seem …

Characterizing Diatom Biofilms And Their Influence On The Sand Biogeochemistry Of High Energy Beaches, Logan C. Jarrell

Honors Theses

High energy beaches are among the most dynamic ecological settings on Earth. Compared to mudflats, diatoms of high energy beaches have been more neglected in the literature, particularly true of the intertidal biofilms that form and dissipate with nutrient cycling and light intensity over the tidal cycle. Although short lived, the productivity of these biofilms may be critical to the organic-poor sand. Through sediment coring and subsequent analyses of the uppermost sand of three suspected biofilm stations—non-runnel, runnel crest, and runnel trough—along with seemingly bare sand as a control, this study sought to verify the presence of diatom biofilms and …

Habitat Preferences Of Blue Marlin (Makaira Nigricans) And Black Marlin (Istiompax Indica) In The Eastern Pacific Ocean, Nima Farchadi, Michael G. Hinton, Andrew R. Thompson, Zhi-Yong Yin

Theses

Overexploitation and climate change can reduce the abundance and shift the spatial distribution of marine species. Determining the habitat suitability of a mobile pelagic species, such as Makaira nigricans (BUM) and Istiompax indica (BLM), can help describe their spatiotemporal distribution patterns over a broad spatial scale, which is a crucial need for fisheries management. Using 14 years (1997-2010) of Inter-American Tropical Tuna Commission (IATTC) catch data from purse-seine vessels in the eastern Pacific Ocean (EPO), we modeled the dynamic habitat suitability of BUM and BLM in response to environmental variables within the EPO using a species distribution model (MaxEnt) with …

Sea Squad, Liam Geary Baulch

The Goose

The Sea Squad is a band of cheerleaders against climate change. Taking action as a team in formation, they gather momentum, inviting all people to cheer with them, mimicking the infinitely expandable nature of the seas' molecular structure. The work was developed and performed as a bilingual project at Est-Nord-Est in Saint-Jean-Port-Joli, Quebec, Canada, and has since been performed and exhibited internationally. The following poems are some of the chants that Sea Squad use to get a crowd cheering together against climate change.

Reconstruction Of Sea Level Around The Korean Peninsula Using Cyclostationary Empirical Orthogonal Functions, Se-Hyeon Cheon, Benjamin D. Hamlington, Kyung-Duck Suh

OES Faculty Publications

Since the advent of the modern satellite altimeter era, the understanding of the sea level has increased dramatically. The satellite altimeter record, however, dates back only to the 1990s. The tide gauge record, on the other hand, extends through the 20th century but with poor spatial coverage when compared to the satellites. Many studies have been conducted to create a dataset with the spatial coverage of the satellite datasets and the temporal length of the tide gauge records by finding novel ways to combine the satellite data and tide gauge data in what is known as sea level reconstruction. However, …

The Effects Of Density Gradients On The Distribution And Behavior Of Copepods, Connor Cayson

Theses

Observations of fine-scale behavioral dynamics of zooplankton may shed insight into much larger-scale ecosystem patterns and phenomena. Some zooplankton, such as copepods, are known to aggregate near density gradients; however, it is not clear the extent to which density gradients alone affect copepod distribution and behavior, since these gradients are often associated with phytoplankton layers. In this study, we investigated the behavior of Calanus pacificus in response to salinity gradients through laboratory experiments observed with high-resolution video and analyzed using computational techniques. Image data were collected using two cameras recording continuously for a duration of 30 minutes or more, allowing …

Using Local Fishery Monitoring To Understand Small-Scale Coastal Fisheries In Tanzania, Matthew Robertson

LSU Master's Theses

Nearshore marine fisheries provide the main source of protein for nearly 9 million people in the coastal villages of Tanzania, yet for decades the fisheries have shown signs of overexploitation. These fisheries are small-scale and co-managed by local coastal communities in groups known as Beach Management Units (BMUs). BMUs monitor individual fishing trip data (e.g. gear, vessel, taxa); however, these data have only been analyzed in nationally aggregated statistics and to our knowledge, are not presently used in management decision making. The present thesis aimed to identify the forms of data and information that local fishery monitoring can record about …

Next Generation Sequencing Methods For Coastal Zone Water Quality Monitoring, Catherine Iskrenko

HCNSO Student Capstones

When analyzing the water quality of the coastal zone, culture-based techniques have been utilized most often to identify Fecal Indicator Bacteria in samples. Since the advent of the Sanger Method for DNA sequencing, other techniques have arisen that provide significantly more information on the microorganisms in sample, but they are still not the mainstream for water quality analysis. This capstone reviews and compares culture-based techniques, DNA sequencing, RNA sequencing, qPCR for biomarker, and 16S rDNA sequencing to highlight their merits and shortcomings for analyzing environmental water samples. The technique presented that provides the broadest range of information (including the identification …

Bubble Stream Production By Belugas (Delphinapterus Leucas), Megan Slack

Theses

Bubble stream production in belugas has been poorly characterized and its function is not well understood. I examined behavioral states when producing bubble streams (“bubbling”), and when bubbling calls, to determine whether bubbling was significantly associated with a particular call category or behavioral state. Using 19 hours of video and audio recordings collected over a two-day period, I quantified bubble streams of a 4-month old calf and an unrelated adult female housed together. Based on the overall activity budgets and pool of vocalizations for both animals, I calculated the expected counts of bubble streams with and without vocalizations, assuming that …

Geotraces And Beyond: Studies Of Trace Elements In Coastal And Open Ocean Waters With An Emphasis On The Effects Of Oxygen Depletion And Hydrothermal Plumes, Peng Ho

Dissertations

We investigated various dissolved trace element (dTE) distributions in two distinct areas: the coastal northern Gulf of Mexico and the eastern tropical Pacific Ocean.

A multi-year (2007‒2011) chemical time series of eight stations in the western Mississippi Sound (MS) and northwestern Mississippi Bight (MB) was undertaken to examine the factors affecting chemical distributions in this dynamic region. Key findings include the frequent development of bottom water hypoxia in MB during late spring-summer, the likely contribution of submarine groundwater discharge (SGD) to the material flows, and observation of effects of episodic events including tropical storms and the opening of the Bonnet …

The Feasibility Of Using Inherent Optical Properties And The Apparent Optical Property Remote Sensing Reflectance To Estimate Suspended Particulate Matter, Particularly For Use In Airborne Hydrographic Surveys, Sarah Epps

Dissertations

Airborne hydrographic surveys are routinely used to create and update nautical charts around the world. This research is intended to assist in maximizing the utility of the data products made available from those surveys in accordance with the current survey–once, use–many–times initiatives. Specifically, this project evaluates the feasibility of using the data available airborne hydrographic systems that utilize bathymetric lasers and hyperspectral sensors to estimate the concentration of suspended particulate matter (SPM). SPM is sometimes also called suspended sediment. The ability to chart spatial distributions of SPM utilizing hydrographic survey systems already in operation will assist researchers, managers, and stakeholders …

Hydrodynamic Drivers Of Dissolved Oxygen Variability Within A Highly Developed Tidal Creek In Myrtle Beach, South Carolina, Douglas Matthew Pastore

Electronic Theses and Dissertations

Erosion and water quality degradation have been observed in Singleton Swash in Myrtle Beach, SC, and have been hypothesized to be related to migration of the beach-face channel. Dredging this channel temporarily fixes erosional threats to nearby infrastructure but the effects on water quality are not well understood. It is hypothesized that variations in dissolved oxygen (DO) concentration (used here as a proxy for water quality) within the water column are related to changes in vertical mixing and transport due to oceanic tidal forcing. This study utilizes current meters, pressure sensors, and optical DO probes to measure and study the …

Seasonal Occurrence, Relative Abundance, And Migratory Movements Of Juvenile Sandbar Sharks, Carcharhinus Plumbeus, In Winyah Bay, South Carolina, Caroline Collatos

Electronic Theses and Dissertations

Winyah Bay, located on the coast of South Carolina, is the fourth largest U.S. estuary by discharge rate (Voulgaris et al. 2002), and provides an annually used habitat for juvenile C. plumbeus (Abel et al. 2006, Gary 2009). From May to September 2016 and 2017, we set a total of 303 bottom longlines in middle and lower Winyah Bay to assess sex ratios, size distributions, and catch per unit effort (CPUE), as well as the potential influence of abiotic parameters on CPUE. A subset of eleven juvenile C. plumbeus was tagged with VEMCO (V16-4H) acoustic transmitters to analyze seasonal occurrence, …

Semi-Quantitative Assessment On Winyah Bay's Microplastic Contamination Levels, Samantha Ladewig

Electronic Theses and Dissertations

Although there is much concern globally regarding microplastic contamination in aquatic environments, there is little documentation on microplastic contamination concentrations within South Carolina inland waters and coastal areas. Specifically, Winyah Bay, SC should be of high priority for microplastic contamination evaluations as it is the third largest drainage basin (47,060 km2) and the second largest (157 km2) estuarine system on the east coast of the United States. Today, the general influencing physical factors on microplastic transport are mostly known by the scientific community, however, transport and deposition patterns of microplastics heavily vary by location depending on various physical, chemical, and …

Ocean Impacts On Australian Interannual To Decadal Precipitation Variability, Zachary F. Johnson, Yoshimitsu Chikamoto, Jing-Jia Luo, Takashi Mochizuki

Plants, Soils, and Climate Faculty Publications

In Australia, successful seasonal predictions of wet and dry conditions are achieved by utilizing the remote impact of sea surface temperature (SST) variability in tropical oceans, particularly the Pacific Ocean, on the seasonal timescale. Beyond seasonal timescales, however, it is still unclear which processes and oceans contribute to interannual-to-decadal wet/dry conditions in Australia. This research examines the interannual-to-decadal relationship between global SST anomalies (SSTAs) and Australian wet/dry variability by analyzing observational data and global climate model experiments conducted with the NCAR Community Earth System Model (CESM) and the Model for Interdisciplinary Research on Climate (MIROC). A 10-member ensemble simulation suite …

Presence/Absence And Density Data For Epipelagic Tows Collected During R/V Blazing Seven Cruises Lf2016a And Lf2016b, Northern Gulf Of Mexico From 2016-06-09 To 2016-07-28, Jay R. Rooker, David Wells

DEEPEND Datasets

This dataset reports presence/absence and density data for epipelagic tows collected in the northern Gulf of Mexico during R/V Blazing Seven cruises LF2016A and LF2016B (2016-06-09 to 2016-07-28). Larval fishes were sampled from 48 stations and cruise data were collected at each site including latitude/longitude, date, time, environmental data (temperature, salinity, dissolved oxygen) and Sargassum dry weight. Larval catch data before and after the oil spill will be compared to improve our understanding of the causes of temporal variability as it relates to the Deep-Water Horizon oil spill (DWHOS). Habitat associations of selected taxa (billfishes, tunas, dolphinfishes, flyingfishes) will be …

An Implementation Strategy To Quantify The Marine Microbial Carbon Pump And Its Sensitivity To Global Change, Carol Robinson, Douglas Wallace, Jung-Ho Hyun, Luca Polimene, Ronald Benner, Yao Zhang, Ruanhong Cai, Rui Zhang, Nianzhi Jiao

Faculty Publications

No abstract provided.

Effects Of Natural And Anthropogenic Forcing On Marsh Channel Evolution, Jeremiah Robinson

LSU Master's Theses

Wetlands have many ecological and physical properties that are essential for coastal communities. These ecosystems sustain local economies, provide essential habitats, are a source of numerous ecological and biological services, and protect coastal populations from storms. Of the many wetland types, salt marshes are among the most vulnerable to environmental changes. Salt marshes quickly respond to natural and human-driven perturbations and their high rate of loss in the last century is cause for concern.

In this project the rate of marsh loss driven by channel widening was measured through a comparative analysis of modern high resolution images and historic aerial …

Spatial And Temporal Distributions Of Pelagic Sargassum In The Intra-Americas Sea And Atlantic Ocean, Mengqiu Wang

USF Tampa Graduate Theses and Dissertations

Pelagic Sargassum is one type of marine macroalgae that is known to be abundant in the Gulf of Mexico and Sargasso Sea. It is also known to serve as a critical habitat for many marine animals. In the past few years, large amounts of Sargassum have been reported in the Tropical Atlantic and Caribbean Sea (CS), causing significant environmental and economic problems. The goal of this study is to improve the understanding of Sargassum distributions, quantity, transport pathways, and bloom mechanisms in the CS and Tropic Atlantic through combining a variety of techniques including satellite remote sensing, field and laboratory …

Plastics And Microplastics As Vectors For Bacteria And Human Pathogens, Amanda Lee Laverty

OES Theses and Dissertations

Since plastics degrade very slowly, they remain in the environment on much longer timescales than most natural substrates and can thus provide a novel habitat for colonization by bacterial communities. The full spectrum of relationships between plastics and bacteria, however, is little understood. The objective of this study was to examine marine plastic pollution as a substrate for bacteria, with particular focus on Vibrio spp., including the human pathogens, Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus.

Colonization experiments were set up in a tributary of the lower Chesapeake Bay to follow Vibrio spp. colonization and …

Advances In Amino Acid Analysis For Marine Related Matrices And Its Application To Coastal Shelf Settings In The Canadian Arctic, Rachel M. Mcmahon

OES Theses and Dissertations

Amino acids comprise up to 50% of organic matter in cellular material and are a major fraction of oceanic organic carbon. Amino acids are also considered highly labile during organic matter recycling, making them useful proxies for organic carbon cycling. Nevertheless, analysis of individual amino acids has been burdened by lengthy derivatization and complex analysis since the 1950s. In this thesis, I describe the modification of advanced analytical techniques, developed in the biomedical field, for analysis of marine matrices which allow the determination of at least 40 amino acids without the need for lengthy sample preparation and derivatization, twice the …

The Impact Of The Deepwater Horizon Blowout On Historic Shipwreck-Associated Sediment Microbiomes In The Northern Gulf Of Mexico, Leila J. Hamdan, Jennifer Salerno, Allen H. Reed, Samantha B. Joye, Melanie Damour

Faculty Publications

More than 2,000 historic shipwrecks spanning 500 years of history, rest on the Gulf of Mexico seafloor. Shipwrecks serve as artificial reefs and hotspots of biodiversity by providing hard substrate, something rare in deep ocean regions. The Deepwater Horizon (DWH) spill discharged crude oil into the deep Gulf. Because of physical, biological, and chemical interactions, DWH oil was deposited on the seafloor, where historic shipwrecks are present. This study examined sediment microbiomes at seven historic shipwrecks. Steel-hulled, World War II-era shipwrecks and wooden-hulled, 19th century shipwrecks within and outside of the surface oiled area and subsurface plume were examined. Analysis …

Ms Analysis Of A Dilution Series Of Bacteria: Phytoplankton To Improve Detection Of Low Abundance Bacterial Peptides, Emma Timmins-Schiffman, Molly P. Mikan, Ying Sonia Ting, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. …

Description And Mechanisms Of The Mid-Year Upwelling In The Southern Caribbean Sea From Remote Sensing And Local Data, Digna T. Rueda-Roa, Tal Ezer, Frank E. Muller-Karger

CCPO Publications

The southern Caribbean Sea experiences strong coastal upwelling between December and April due to the seasonal strengthening of the trade winds. A second upwelling was recently detected in the southeastern Caribbean during June-August, when local coastal wind intensities weaken. Using synoptic satellite measurements and in situ data, this mid-year upwelling was characterized in terms of surface and subsurface temperature structures, and its mechanisms were explored. The mid-year upwelling lasts 6-9 weeks with satellite sea surface temperature (SST) ~1-2°C warmer than the primary upwelling. Three possible upwelling mechanisms were analyzed: cross-shore Ekman transport (csET) due to alongshore winds, wind curl (Ekman …

Missing The Boat? Measuring And Evaluating Local Groundfish Purchases By New England Institutions, Jeffrey K. O'Hara, Loren Mcclenachan

Journal of Ocean and Coastal Economics

The development of local food markets has provided a critical economic opportunity for small farms in New England. The collapse of Gulf of Maine groundfish stocks has motivated an interest in developing similar marketing opportunities for wild-caught, locally abundant seafood. Institutions, particularly schools and colleges, have been identified as a strategic entry point in the supply chain for such products. However, there has been a dearth of research on this topic. We undertake a case study that evaluates purchases of local groundfish by schools and colleges in New England. First, we analyze recently developed secondary data to assess the propensity …

A Novel Multiproxy Approach To Reconstructing Sea Surface Temperature In The Southwestern Gulf Of Mexico, Marissa Anne Vara

LSU Master's Theses

Coral Sr/Ca is a widely-used proxy for sea surface temperature (SST); however, discrepancies in the coral Sr/Ca-SST relationship among colonies of the same species makes uncertainty in absolute temperature reconstructions larger than the climate signal yet climate variability studies are possible. Furthermore, the riverine input of terrestrial carbonate weathering products to the coastal waters can disrupt the coral Sr/Ca-SST signal by changing local seawater chemistry. This study evaluates the fidelity and reproducibly of coral SST proxies (Sr/Ca, Li/Ca, Mg/Li, Sr-U, Mg/Ca, and U/Ca) and a riverine-upwelling proxy (Ba/Ca) in four Orbicella faveolata colonies in two reefs offshore from Veracruz, Mexico …

Developing A Framework To Identify Local Business And Government Vulnerability To Sea-Level Rise: A Case Study Of Coastal Virginia, Sarah L. Stafford, Alexander D. Renaud

May 11, 2018: Adaptation Policy

In this paper we develop methods for identifying local business and government vulnerabilities to sea-level rise and the natural hazards associated with it. Unlike the fairly large literature on measuring social vulnerability to natural hazards, there are very few papers that discuss methods for measuring local business or local government vulnerability even though businesses and governments are also differentially affected natural hazards. Our goal is to create measures that are easily replicable using readily available data and that are easy to explain to local planners, policy makers, and citizens. We implement our measures of local business and government vulnerability for …

Light Availability And Phytoplankton Growth Beneath Arctic Sea Ice: Integrating Observations And Modeling, Victoria J. Hill, Bonnie Light, Michael Steele, Richard C. Zimmerman

OES Faculty Publications

Observations of the seasonal light field in the upper Arctic Ocean are critical to understanding the impacts of changing Arctic ice conditions on phytoplankton growth in the water column. Here we discuss data from a new sensor system, deployed in seasonal ice cover north‐east of Utqiaġvik, Alaska in March 2014. The system was designed to provide observations of light and phytoplankton biomass in the water column during the formation of surface melt ponds and the transition from ice to open water. Hourly observations of downwelling irradiance beneath the ice (at 2.9, 6.9, and 17.9 m depths) and phytoplankton biomass (at …