Oceanography Commons^™

Global Patterns And Predictions Of Seafloor Biomass Using Random Forests, Chih-Lin Wei, Gilbert T. Rowe, Elva Escobar-Briones, Antje Boetius, Thomas Soltwedel, M. Julian Caley, Yousria Soliman, Falk Huettmann, Fangyuan Qu, Zishan Yu, C. Roland Pitcher, Richard L. Haedrich, Mary K. Wicksten, Michael A. Rex, Jeffrey G. Baguley, Jyotsna Sharma, Roberto Danovaro, Ian R. Macdonald, Clifton C. Nunnally, Jody W. Deming, Paul Montagna, Mélanie Lévesque, Jan Marcin Weslawski, Maria Wlodarska-Kowalczuk, Baban S. Ingole, Brian J. Bett, David S. M. Billett, Andrew Yool, Bodil A. Bluhm, Katrin Iken, Bhavani E. Narayanaswamy

Biology Faculty Publication Series

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive …

A Comprehensive Uncertainty Analysis And Method Of Geometric Calibration For A Circular Scanning Airborne Lidar, Michael Oliver Gonsalves

Dissertations

This dissertation describes an automated technique for ascertaining the values of the geometric calibration parameters of an airborne lidar. A least squares approach is employed that adjusts the point cloud to a single planar surface which could be either a narrow airport runway or a dynamic sea surface. Going beyond the customary three boresight angles, the proposed adjustment can determine up to eleven calibration parameters to a precision that renders a negligible contribution to the point cloud’s positional uncertainty.

Presently under development is the Coastal Zone Mapping and Imaging Lidar (CZMIL), which, unlike most contemporary systems that use oscillating mirrors …

The Distribution And Comparative Biogeochemistry Of Silver With Other Selected Trace Metals In Coastal Waters Near Massachusetts, Usa, Christian F. Krahforst

Graduate Doctoral Dissertations

Water samples and hydrologic data were collected during 1994-1996 in New England coastal waters near Massachusetts, USA to examine the distribution of silver and other trace metals (Cu, Pb, Cd, Zn, and Fe) in the coastal systems of Massachusetts and Cape Cod Bays. These investigations were designed to test the hypothesis that silver could serve as a tracer of dispersion of municipal wastewater in Boston Harbor into Massachusetts and Cape Cod Bays and estimate the relative contribution of wastewater discharge to the overall silver budget of the Massachusetts Bays system. Silver concentrations in both particulate and filtered (<0.4 µm) fractions averaged 103 and 117 pmol kg-1 for Boston Harbor, 34 and 10 pmol kg-1 in western Massachusetts Bay, and 11 and 7 pmol kg-1 in the central portion of Massachusetts Bay, respectively. Average Ag concentrations in southern Gulf of Maine coastal waters were 10 and 2 pmol kg-1 for filtered and particulate fractions, respectively. While nearly half of the silver existed in particulate form in Boston Harbor, nearly 80% of the silver in Massachusetts and Cape Cod Bays occurred in the filterable fraction. Coastal water surveys revealed non-conservative Ag behavior and probably the result of incomplete mixing of three or more water masses with unique Ag signatures (e.g., Merrimack River, Boston Harbor, surface and intermediate Gulf of Maine waters). Quasi-steady state mass balance approaches estimate most of the silver entering into the Massachusetts Bays system during the study period was the result of municipal wastewater discharge to Boston Harbor (84-93%).

Multivariate analyses …

Autonomous Underwater Vehicles As Tools For Deep-Submergence Archaeology, Christopher N. Roman, Ian Roderick Mather

Graduate School of Oceanography Faculty Publications

Marine archaeology beyond the capabilities of scuba divers is a technologically enabled field. The tool suite includes ship-based systems such as towed side-scan sonars and remotely operated vehicles, and more recently free-swimming autonomous underwater vehicles (AUVs). Each of these platforms has various imaging and mapping capabilities appropriate for specific scales and tasks. Broadly speaking, AUVs are becoming effective tools for locating, identifying, and surveying archaeological sites. This paper discusses the role of AUVs in this suite of tools, outlines some specific design criteria necessary to maximize their utility in the field, and presents directions for future developments. Results are presented …

Phosphorus Uptake In Rhodomonas Salina (Wislouch) And Its Effect On Allocation And Elimination In Acartia Tonsa (Dana), Danna Palladino

OES Theses and Dissertations

Phosphorus is a key element in important biochemical compounds, such as RNA and phospholipids, and can become limiting in a variety of marine systems. The uptake of phosphorus into biochemical fractions (protein, low molecular weight (LMW) compounds, lipid, polysaccharide and nucleic acid) in Acartia tonsa fed ³³P -labeled Rhodomonas salina was examined. R. salina was cultured on two variations of one media that in one case contained phosphorus in balance and the other out of balance with relation to other standard f/2 components. The P-balanced (PB) media had a N:P ratio of 24.5, which is higher than that found …

Beneath The Salt Marsh Canopy: Loss Of Soil Strength With Increasing Nutrient Loads, R. Eugene Turner

Faculty Publications

Although the broadly observed increase in nutrient loading rates to coastal waters in the last 100 years may increase aboveground biomass, it also tends to increase soil metabolism and lower root and rhizome biomass—responses that can compromise soil strength. Fourteen different multiyear field combinations of nutrient amendments to salt marshes were made to determine the relationship between soil strength and various nitrogen, phosphorus, and nitrogen+phosphorus loadings. There was a proportional decline in soil strength that reached 35% in the 60- to 100-cm soil layer at the highest loadings and did not level off. These loading rates are equivalent to those …

Clay Mineral Cycles Identified By Diffuse Spectral Reflectance In Quaternary Sediments From The Northwind Ridge: Implications For Glacial-Interglacial Sedimentation Patterns In The Arctic Ocean, Lyanne N. Yurco, Joseph D. Ortiz, Leonid Polyak, Dennis A. Darby, Kevin A. Crawford

OES Faculty Publications

A Quaternary record of fine-grained sediment composition is used to investigate Arctic Ocean climate variability on glacial-interglacial time scales. Diffuse spectral reflectance data from sediment core P1-92AR-P25 from the Northwind Ridge, north of Alaska, demonstrates cyclic variations in mineralogy. Varimax-rotated R-mode factor analysis of down-core data revealed three major mineralogical assemblages, which were then compared with the content of manganese, a proxy for basin ventilation, and thus glacial-interglacial cycles. Results indicate that factor 1, a smectite + chlorite clay assemblage, was delivered to the core site during interglacials, either by fluvial discharge or sea-ice drift from Siberian rivers or inflow …

Oxygen Isotopes As A Tracer Of Dom Processes In River-Estuary Systems, Joy Ashley Matthews

OES Theses and Dissertations

In the biogeochemical study of dissolved organic matter (DOM) in natural waters, stable isotopes are used to provide insight into both the sources of DOM and the processes affecting its alteration. Through the research presented here, oxygen isotopes are incorporated into the study of DOM through the adaptation of a pyrolysis elemental analysis isotope ratio mass spectrometer method, and sample preparation using two-stage ultrafiltration.

The application of oxygen isotopes to the study of DOM is demonstrated in two studies. First, natural abundance of δ¹⁸O in DOM is explored in the Delaware estuary. Using a two end-member mixing model, …

Marine Bioinvasions And Climate Change, James T. Carlton, Sandra C. Lindstrom, Celia M. Smith, Jennifer E. Smith

National Invasive Species Council

BACKGROUND

Invasive species are second only to habitat destruction as the greatest cause of species endangerment and global biodiversity loss. Invasive species can cause severe and permanent damage to the ecosystems they invade. Consequences of invasion include competition with or predation upon native species, hybridization, carrying or supporting harmful pathogens and parasites that may affect wildlife and human health, disturbing ecosystem function through alteration of food webs and nutrient recycling rates, acting as ecosystem engineers and altering habitat structure, and degradation of the aesthetic quality of our natural resources. In many cases we may not fully know the native animals …

Abundance And Ecological Significance Of The Clam Rangia Cuneata (Sowerby, 1831) In The Upper Barataria Estuary (Louisiana, Usa), Wai Hing Wong, Nancy N. Rabalais, R. Eugene Turner

Faculty Publications

We proposed that Rangia cuneata (Sowerby, 1831) is an important estuarine bivalve with ecological significance in three coastal lakes in Barataria Bay, Gulf of Mexico—Lake Cataouatche, Lake Salvador and Lac des Allemands. Our goals were to determine the abundance and distribution of Rangia in these lakes and to measure clearance times to elucidate its potential impacts on phytoplankton communities. The estimated average densities of R. cuneata in Lake Cataouatche, Lake Salvador, and Lac des Allemands were 63, 157, and 107 individuals m−2, respectively, which is 30% lower than that observed in nearby Lake Pontchartrain. The size of clams in Lake …

Measurement And Interpolation Of Sea Surface Temperature And Salinity In The Tropical Pacific: A 9,000 Nautical Mile Research Odyssey, Amber Brooks

Earth and Soil Sciences

The purpose of this project was to compare spline and inverse distance weighting interpolation tools on data collected in the tropical Pacific Ocean by ship and data from a global network of CTD floats, known as Argo floats (fig.1), to provide evidence that technological advancement and integration is aiding our understanding of the ocean-atmosphere system of planet Earth. Thirty-one sea surface temperature and salinity samples were manually taken across a 9,000 nautical mile trek of the Pacific Ocean for the months of April, May and June 2008. Argo ASCII globally gridded monthly averaged sea surface temperature and salinity data, from …

New Bedford/Fairhaven Municipal Harbor Plan, Fort Point Associates, Inc., Apex Companies, Llc, Urban Harbors Institute, University Of Massachusetts Boston, Fxm Associates

Urban Harbors Institute Publications

The historic harbor lying between the City of New Bedford and Town of Fairhaven has shaped the identities and economies of these two municipalities for centuries. Today, the Harbor is one of nation’s preeminent fishing ports, ranked #1 nationally in 2007 in dollar value ($268 million) of fish landings with an estimated total economic regional impact of nearly $1 billion. The New Bedford’s seafood processing industry has grown in size and sophistication in recent years and is an internationally established center for this industry. Marine service and vessel repair industries, centered in Fairhaven, have an excellent reputation with commercial fleets …

Application Of Structured Light Imaging For High Resolution Mapping Of Underwater Archaeological Sites, Chris Roman, Gabrielle Inglis, James Rutter

Graduate School of Oceanography Faculty Publications

This paper presents results from recent work using structured light laser profile imaging to create high resolution bathymetric maps of underwater archaeological sites. Documenting the texture and structure of submerged sites is a difficult task and many applicable acoustic and photographic mapping techniques have recently emerged. This effort was completed to evaluate laser profile imaging in comparison to stereo imaging and high frequency multibeam mapping. A ROV mounted camera and inclined 532 nm sheet laser were used to create profiles of the bottom that were then merged into maps using platform navigation data. These initial results show very promising resolution …

Preferential Fish Consumption Based On Omega-3 Fatty Acids And Mercury Concentrations For Maximum Health Benefits, Katrina Smith

Honors Theses

The regular consumption of seafood offers a variety of protective effects, including the reduction of the risk of cardiovascular disease and stroke, due to the presence of omega-3 fatty acids in fish. These protective effects may be diminished by the contamination of seafood by mercury. Mercury increases the risk of cardiovascular problems and impedes neurological development. The objective of this project was to determine the fish species that are appropriate for consumption based on low levels of mercury and recommended intake levels of omega-3 fatty acids. Species that are high in omega-3s and low in mercury include salmon, trout and …

Rhizocephalan Parasites Of Mud Crabs In South Carolina Estuaries, Erin Burnette

Honors Theses

Rhizocephalan parasites often infect commercially important crustacean species such as the blue crab (Callinectes sapidus). In this experiment, the prevalence of rhizocephalan parasites was determined by sampling mud crabs (Panopeus herbstii) in three different locations; Huntington Beach State Park, Waites Island, and Murrells Inlet. Crabs were determined to be parasitized by the presence of an externae extruding from their apron. Unparasitized crabs were also collected to serve as a control group. The externa were removed and DNA extractions were performed. Polymerase chain reactions (PCR) were done to prove whether the crabs were parasitized by Loxothylacus texanus or Loxothylacus panopaei. Results …

Fun, Fun, Fun Till The Waters Take The Beaches Away, Briana Ellis

Maria Dittman Library Research Competition: Student Award Winners

No abstract provided.

Sustainable Portland: Implementation Series 3, New England Environmental Finance Center

Climate Change

This report is the third in a series of efforts by students at the Muskie School of Public Service, Community Planning and Development Master’s program, in a core class called “Sustainable Communities.” In this course students seek to understand principles of sustainability and how efforts to implement Sustainability programs can become more successful. The report assembles term papers students completed on particular efforts by municipalities, universities, and other groups to achieve sustainability goals. Students worked on each project in a service learning format with real world clients. They were asked to fashion their papers around lessons learned by other organizations …

A Test Of The Area Of Refuge Hypothesis In Indo-Pacific Marine Biogeography, Jonnell C. Sanciangco

Biological Sciences Theses & Dissertations

Many hypotheses have been proposed to explain the marine biogeographic patterns of species richness of the Indo-Pacific. One of these hypotheses suggests that available habitat area is the main predictor of species richness. This is the basis for the area of refuge hypothesis that attempts to explain the global maxima of species richness found in the Coral Triangle, the area encompassing mostly the Philippines, Indonesia, and Malaysia. This species-area effect also has habitat heterogeneity as a potential component. The purpose of this study is to test the effects of habitat availability predictors, such as shallow water area and coastline length …

The Role Of The Alaskan Stream In Modulating The Bering Sea Climate, Tal Ezer, Lie-Yauw Oey

CCPO Publications

A numerical ocean circulation model with realistic topography, but with an idealized forcing that includes only lateral transports is used to study the role of the Alaskan Stream (AS) in modulating the Bering Sea (BS) variability. Sensitivity experiments, each one with a different strength of the AS transport reveal a nonlinear BS response. An increase of AS transport from 10 to 25 Sv causes warming (similar to 0.25 degrees C mean, similar to 0.5 degrees C maximum) and sea level rise in the BS shelf due to increased transports of warmer Pacific waters through the eastern passages of the Aleutian …

Barcoding Of Arrow Worms (Phylum Chaetognatha) From Three Oceans: Genetic Diversity And Evolution Within An Enigmatic Phylum, Robert M. Jennings, Ann Bucklin, Annelies Pierrot-Bults

Biology Faculty Publication Series

Arrow worms (Phylum Chaetognatha) are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct ranges, in some cases with the same species apparently found at both poles. To better understand how these complex evolutionary and geographic variables are reflected in the species makeup of chaetognaths, we analyze …

Differential Damages Sustained From Hurricane Ike On Varying Growth Forms Of Coral At Distinct Locations Off The Coast Of South Caicos, Turks And Caicos Islands, Caitlyn A. Kenny

Pell Scholars and Senior Theses

In September 2008, Hurricane Ike hit South Caicos, Turks and Caicos Islands as a Category 4 hurricane. This study examines the differential damages caused to varying common growth forms, size, locations, and depths of coral by Hurricane Ike on South Caicos reefs. Belt transect techniques as well as line intercept techniques were conducted at nine sites, looking at 14 common species of coral, representing four different growth forms. A total of 9,011 coral colonies were surveyed. 2,832 colonies (31.4%) were found to have at least one type of damage. It was expected that branching and digitate growth forms as well …

Design Of A Software Framework Prototype For Scientific Model Interoperability, Eric Fritzinger, Sohei Okamoto

2010 Annual Nevada NSF EPSCoR Climate Change Conference

19 PowerPoint slides Session 2: Infrastructure Convener: Sergiu Dascalu, UNR Abstract: -What are models? -Mathematical models used to describe a system -E.g. Atmospheric, Oceanic, Ecological, etc… -Algorithmic calculations which take input and produce estimated results -Weather forecasting, global warming predictions, sea level estimations, etc… -Models are invaluable

Abundance Of Ammonia-Oxidizing Archaea And Bacteria Along An Estuarine Salinity Gradient In Relationship To Potential Nitrification Rates, Anne E. Bernhard, Zachary C. Landry, Alison Blevins, José R. De La Torre, Anne E. Giblin, David A. Stahl

Biology Faculty Publications

Abundance of ammonia-oxidizing Archaea (AOA) was found to be always greater than that of ammonia-oxidizing Bacteria along an estuarine salinity gradient, and AOA abundance was highest at intermediate salinity. However, AOA abundance did not correlate with potential nitrification rates. This lack of correlation may be due to methodological limitations or alternative energy sources.

A Transition-Phase Teleconnection Of The Pacific Quasi-Decadal Oscillation, Shih-Yu (Simon) Wang, R. R. Gillies, L. E. Hipps, J. Jin

Plants, Soils, and Climate Faculty Publications

The atmospheric circulation patterns associated with the Pacific quasi-decadal oscillation (QDO) are investigated using available observational data from 1948 to 2007. Previous studies indicate that the Pacific QDO is characterized by a distinct lifecycle in the form of sea surface temperature (SST) patterns. In the warm and cool phases of the Pacific QDO, the SST patterns resemble those associated with the El Niño-Southern Oscillation (ENSO). During the warm–cool and cool–warm transitions of the Pacific QDO, recurrent SST patterns are also clearly visible. The rotated empirical orthogonal function analysis on the 10–15 year filtered data shows that the evolutions of SST …

Peconic Bays Estuary Benthic Gis Data, Robert M. Cerrato

SoMAS Research Data

Benthic habitat maps of the estuary seafloor can increase our knowledge of the range and variability in benthic habitats, assist managers in their efforts to protect and/or restore commercially and recreationally important finfish and shellfish, link land usage (e.g. developed vs. undeveloped areas) and water quality data to benthic habitat quality, and make it possible to utilize faunal data as a long-term indicator of the overall “health” of the estuary. This study combined high-resolution sonar surveys with physical and faunal characteristics at point locations in different seafloor areas of the Peconic Bays Estuary. Sonar mapping used multibeam swath bathymetry to …

Fall 2010, Nsu Oceanographic Center

Currents

No abstract provided.

Trace Metal Biogeochemistry In The Western North Pacific, Peter Lynn Morton

OES Theses and Dissertations

Dissolved and suspended particulate samples collected during the Intergovernmental Oceanographic Commission 2002 Contaminant Baseline Survey were analyzed to determine the surface and vertical distributions of Cd, Co, Cu, Mn, Ni Zn and Pb across the western and central North Pacific.

Dissolved trace metal concentrations were measured using a novel isotope dilution-ICP-MS method after extraction over an 8-hydroxyquinoline resin column and validated through the use of the SAFe consensus reference materials. Filtered suspended particulate matter was digested using an HCl/HNO3/HF mixture and analyzed by HR-ICP-MS to obtain total particulate concentrations for the trace metals and other tracer elements such as Al, …

Interannual Differences In Nutrient Dynamics During A Brown Tide Bloom (Aureococcus Anophagefferens) And The Interaction Of A. Anophagefferens With Heterotrophic Bacteria, George Eric Boneillo

OES Theses and Dissertations

Blooms of Aureococcus anophagefferens (Brown Tides) in Chincoteague Bay were observed over a six-year period (2002–2007) during which interannual differences in nitrogen and carbon uptake and concentrations of dissolved constituents were compared at two sites, one in Maryland and the other in Virginia. Overall, I observed an increase in bloom intensity and duration over time. No single nitrogen compound was responsible for fueling blooms. Instead, A. anophagefferens demonstrated the ability to use a wide range of nitrogen compounds to meet its nutritional demands. Results show that NO₃-, NH₄+, urea, and DFAA were taken up simultaneously during …

Concentrations, Distributions And Chemical Speciation Of Zinc And Cadmium In The Equatorial And South Atlantic Ocean, Gonzalo G. Carrasco

OES Theses and Dissertations

Certain trace metals are important cofactors in enzymatic systems and are thus, essential for life in the world's oceans. Two of these metals, Zn and Cd, are required by phytoplankton for enzymes that facilitate carbon uptake (Morel and Price, 2003). In seawater the total dissolved concentration of a metal (MTD) is distributed among different chemical species and this chemical speciation dictates a metal's bioavailability. Strong organic metal-binding ligands greatly affect the metal's chemical speciation in the ocean, potentially limiting phytoplankton growth by reducing the concentrations of Zn²⁺ and Cd²⁺, the bioavailable forms of these two metals to …

Development Of A Spectral 2-D Fast Fourier Transform Analysis For Sand Ripple Morphology Interpretation, Christopher M. Englert

Honors Theses

A MATLAB-based 2-Dimensional Fast Fourier Transform spectral analysis is developed and tested for its applicability to bedform morphology and hydrodynamic data from a hydrodynamically complex field site. The aspects of the procedure tested are (1) the use of an 8 sub-region arrangement for analysis versus five other arrangements, (2) the procedure for averaging the wavelength-and-orientation outputs from each sub-region to produce a single representative value for each image, (3) methods for eliminating and/or filtering poor quality data, and (4) the procedural steps in the spectral analysis that can appropriately incorporate automation versus manual involvement and interpretation. The automated technique is …