Oceanography Commons^™

A Survey Of Shark Population In Winyah Bay, Sc: A Comparison Of Data From 2002-2006 And From 2012-2014, Jessica Bruce

Honors Theses

As a result of a long-term longline study conducted by Coastal Carolina University, data on the population structure of sharks in Winyah Bay, SC have been recorded since 2002. The data are collected from late spring to fall each year. Two separate data sets, from 2002 to 2006 and from 2012 to 2014, were analyzed for catch per unit effort (CPUE), catch composition, sex ratios, and average precaudallengths (PCL) for males and females. The average CPUE for the 2002-2006 data set was 2.68 with a standard deviation of 0.73 while the average for the most recent data set was 3.20 …

Aerosols, Hurricanes, And Their Interactions : A Case Study Of Hurricane Sandy, Andrew Fontenot, Hesham El-Askary, W. Lau

Student Scholar Symposium Abstracts and Posters

While the effects of aerosols on precipitation have been studied, their effects on more extreme precipitation events like Tropical Cyclones have only been questioned relatively recently. Because of the rarity of the intersection of significant quantities of aerosols and forming/formed tropical cyclones, as well as the possible destruction caused, most experiments about their effects take place in computer models that may not fully simulate the effects of the aerosols. Limitations in satellite sensing make it difficult to track processes and material distributions in hurricanes from afar as well. Hurricane Sandy, a devastating hurricane that formed in October of 2012, may …

How The Presence Of Plastic In The North Pacific Gyre Affects The Growth Of Thalassiosira Through Remote Sensing And Laboratory Replication, Jordynn Brennan, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

Through the use of remote sensing, we are able to determine the approximate location of the garbage patch in the North Pacific Gyre. Though remote sensing does not penetrate the surface of the ocean, monthly satellite images can be analyzed to determine the rate of growth or rate of decrease of certain parameters, such as atmospheric gases, phytoplankton, and dissolved organic matter. Over the past decade, data from the Goddard Earth Sciences Data and Information Services Center (Giovanni program) has shown a significant increase in dissolved organic matter and chlorophyll a content in the area of the North Pacific Garbage …

Growth Rates In Gulf Of Mexico Red Snapper, Lutjanus Campechanus, Before And After The Deepwater Horizon Blowout, Elizabeth Shea Herdter

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20^th, 2010 and released nearly 5 million barrels of crude oil into the northern Gulf of Mexico causing pollution of the water and sediment inhabited by many fishes for at least 87 days while the wellhead went uncapped. Populations of the Gulf of Mexico Red snapper, Lutjanus campechanus, an important fish to the ecology and economy in the region, exhibit affinity to shallow water oil infrastructure such as the Deepwater Horizon making them especially vulnerable to crude oil contamination. The objective of this study is to determine growth of Red …

Polycyclic Aromatic Hydrocarbon Metabolites As A Biomarker Of Exposure To Oil In Demersal Fishes Following The Deepwater Horizon Blowout, Susan Susan Snyder

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20th, 2010, releasing 4.9 million barrels of Louisiana crude oil into the Gulf of Mexico (GoM). Subsequent to the Deepwater Horizon blowout, sediment cores revealed oil on the northern GoM seafloor and abnormal skin lesions were seen in GoM fishes. Exposure to polycyclic aromatic hydrocarbons (PAHs), a component of crude oil, in fish has been associated with many sublethal effects, including cancer and population-level effects. Using a biomarker of exposure to PAHs, this thesis evaluates inter-species, temporal and spatial differences in exposure to hydrocarbon contamination between three species of fish with varying levels …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Cloning And Characterization Of Il-1Β, Il-8, Il-10, And Tnfα From Golden Tilefish (Lopholatilus Chamaeleonticeps) And Red Snapper (Lutjanus Campechanus), Kristina L. Deak

USF Tampa Graduate Theses and Dissertations

Cytokines are pleiotropic and redundant signaling molecules that govern the inflammatory response and immunity, a critical ecological parameter for organism success and population growth. Produced at the site of injury or pathogen intrusion by a variety of cell types, cytokines mediate cell-signaling in either an autocrine or paracrine manner. The type and magnitude of the cytokine milieu produced subsequently dictates the strength and form of immune response. As the most diverse vertebrate group, with a high sensitivity to contaminants, fish represent an important foci for the evaluation of immune system evolution, function, and alteration upon toxicant exposure. While many cytokines …

Aptian To Santonian Foraminiferal Biostratigraphy And Paleoenvironmental Change In The Sverdrup Basin As Revealed At Glacier Fiord, Axel Heiberg Island, Canadian Arctic Archipelago, Claudia J. Schröder-Adams, Jens O. Herrle, Ashton F. Embry, James W. Haggart, Jennifer M. Galloway, Adam T. Pugh, David M. Harwood

ANDRILL Research and Publications

Exceptional exposures of a High Arctic Cretaceous sedimentary record were studied at Glacier Fiord, Axel Heiberg Island. The succession reveals a complex Aptian to Santonian paleoenvironmental history of the Sverdrup Basin that documents several global events. Foraminiferal faunas in combination with rare macrofossil occurrences permit the distinction of nine zones that facilitate biostratigraphic correlations to other High Arctic locales, the Beaufort Mackenzie Basin and the Western Interior Sea. The depositional environment as exposed in the Christopher, Hassel, Bastion Ridge and Kanguk formations changed frequently from a shelf to a shoreface setting. Most sequence boundaries appear to be conformable where shoaling …

Protein Recycling In Bering Sea Algal Incubations, Eli K. Moore, H. Rodger Harvey, Jessica F. Faux, David R. Goodlett, Brook L. Nunn

OES Faculty Publications

Protein present in phytoplankton represents a large fraction of the organic nitrogen and carbon transported from its synthesis in surface waters to marine sediments. Yet relatively little is known about the longevity of identifiable protein in situ, or the potential modifications to proteins that occur during bloom termination, protein recycling and degradation. To address this knowledge gap, diatom-dominated phytoplankton was collected during the Bering Sea spring blooms of 2009 and 2010, and incubated under darkness in separate shipboard degradation experiments spanning 11 and 53 d, respectively. In each experiment, the protein distribution was monited over time using shotgun proteomics, …

Dynamics And Survival Of Coral And Octocoral Juveniles Following Disturbance On Patch Reefs Of The Florida Reef Tract, Lucy Bartlett

USF Tampa Graduate Theses and Dissertations

Over the past several decades, rapid decline in adult stony-coral (comprising the Orders Scleractinia and Anthomedusae, specifically Family Milleporidae) cover has occurred concurrent with an increase in adult octocoral (Octocorallia/gorgonian) cover along the Florida Reef Tract. In January 2010, the Florida Keys experienced extremely cold air and water temperatures, below the lethal threshold for many reef organisms including corals. Very high stony-coral mortality occurred on some patch reefs. The newly-available space created by this disturbance event provided the opportunity for recruitment and settlement of new coral larvae and other reef organisms.

The goal of this study was to examine post-disturbance …

Assessments Of Surface-Pelagic Drift Communities And Behavior Of Early Juvenile Sea Turtles In The Northern Gulf Of Mexico, Robert F. Hardy

USF Tampa Graduate Theses and Dissertations

Knowledge of species distribution and habitat associations are essential for conservation measures. Such information is lacking for many marine species due to their occupancy of broad and ephemeral habitats that are difficult to access for study. Sea turtles, specifically the surface-pelagic juvenile stage of some species, are a group for which significant knowledge gaps remain surrounding their distribution and habitat use. Recent research has confirmed the long-standing hypothesis that the surface-pelagic juvenile stage occurs within surface-pelagic drift communities (SPDC). Within the North Atlantic and surrounding basins, the holopelagic macroalgae Sargassum spp. dominates SPDC and serves as a remotely-detectable indicator of …

Distribution Of Dissolved Trace Metals And Carbon System Parameters In The Surface Waters Of The Hillsborough River And Tampa Bay, Matthew Matthias Elliott

USF Tampa Graduate Theses and Dissertations

This work represents a first look at the general spatial distribution of trace metals and the inorganic carbon system in the surface waters of Tampa Bay. Tampa Bay's chemical environment bears many influences ranging from hydrological and geological to anthropogenic and meteorological. A large y-shaped estuary on the west-central side of the Florida Peninsula, Tampa Bay extends over 400 square miles and has a 2200 square mile watershed that includes extensive swamps, scrub, agricultural lands and densely urbanized areas. Reaching 37 miles from the northernmost point of Old Tampa Bay to the mouth of the estuary near the Sunshine Skyway …

Iron Sources And Dissolved-Particulate Interactions In The Seawater Of The Western Equatorial Pacific, Iron Isotope Perspectives, M. Labatut, F. Lacan, C. Pradoux, J. Chmeleff, A. Radic, J. W. Murray, F. Poitrasson, Anne M. Johansen, F. Thil

All Faculty Scholarship for the College of the Sciences

This work presents iron isotope data in the western equatorial Pacific. Marine aerosols and top core margin sediments display a slightly heavy Fe isotopic composition (δ⁵⁶Fe) of 0.33 ± 0.11‰ (2SD) and 0.14 ± 0.07‰, respectively. Samples reflecting the influence of Papua New Guinea runoff (Sepik River and Rabaul volcano water) are characterized by crustal values. In seawater, Fe is mainly supplied in the particulate form and is found with a δ⁵⁶Fe between −0.49 and 0.34 ± 0.07‰. The particulate Fe seems to be brought mainly by runoff and transported across continental shelves and slopes. …

Predation Thresholds In Marine Microbial Communities Applied To Environments With Low Prey Abundances, Bonnie Bailey

OES Theses and Dissertations

Prokaryotes (Bacteria and Archaea) comprise the largest component of biomass in the world's oceans. Their abundances are controlled by resource availability, viral infections and protist grazing. Many pico- and nano-eukaryotic predators grow almost as quickly as their prey, and greatly increase in numbers as soon as their prey do, leading in tum to depletion in prokaryotes. It is still unclear however, as to what extent microbial predators are able to feed in low prey environments, most prominently in the largest biome on Earth, the deep sea (below l 000 m depth). It has been hypothesized that in low prey environments, …

Utilizing Remote Sensing To Detect Deepwater Horizon Oil Spill Properties, Amanda Kristedja

e-Research: A Journal of Undergraduate Work

This paper focuses on the detection of oil spills using satellite information. ��For this research project, the focus will be primarily on the Deepwater Horizon Oil Spill, which is the largest accidental oil spill. In order to detect an oil spill, the chlorophyll a content must be observed with data from the SeaWiFs at 9km and the MODIS-aqua at 9km and 4km. There is conflicting evidence of whether or not chlorophyll a concentration is positively correlated with the presence of an oil spill. This will be further investigated in the experiment. Also, by utilizing the MODIS instrument aboard the terra …

Effects Of Ocean Acidification On Chlorophyll Content, C. Del Fierro, R. Lloyd, H. El-Askary

e-Research: A Journal of Undergraduate Work

Airborne pollutants contribute to ocean acidification and hence to the associated chlorophyll content level. Previous work showed that falling aerosols causing ocean acidification would in turn result in bleaching and productivity loss in coral reef builders. Chlorophyll content has been used as a measure of the concentration of the photosynthetic pigment chlorophyll a (the most common "green" chlorophyll) in the ocean. In our work we have monitored the change in chlorophyll content obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor on board Terra/Aqua satellites from 2000-2009 over selected pilot areas. Moreover, we have used the Goddard Chemistry Aerosol Radiation …

Research On The Application Of Sea Ice Information In The Arctic North West Passage, Yuanhui Yang

Maritime Safety & Environment Management Dissertations (Dalian)

No abstract provided.

Data Visualization To Evaluate And Facilitate Targeted Data Acquisitions In Support Of A Real-Time Ocean Forecasting System, Edward A. Holmberg Iv

LSU New Orleans Theses and Dissertations

A robust evaluation toolset has been designed for Naval Research Laboratory’s Real-Time Ocean Forecasting System RELO with the purpose of facilitating an adaptive sampling strategy and providing a more educated guidance for routing underwater gliders. The major challenges are to integrate into the existing operational system, and provide a bridge between the modeling and operative environments. Visualization is the selected approach and the developed software is divided into 3 packages: The first package is to verify that the glider is actually following the waypoints and to predict the position of the glider for the next cycle’s instructions. The second package …

Microbial Community Assembly Found With Sponge Orange Band Disease In Xestospongia Muta (Giant Barrel Sponge), Rebecca Mulheron

HCNSO Student Theses and Dissertations

The giant barrel sponge, Xestospongia muta is an iconic and essential species of the coral reefs in South Florida. The sponge has primary roles providing ecosystem services and creating unique habitats for diverse microbial communities. On April 27, 2012 an outbreak of Sponge Orange Band Disease (SOB) was detected off the coast of South Florida. The disease begins with sponge bleaching, followed by mesohyl or “mesohyl” necrosis and often total mesohyl disintegration. Sampling from two diseased populations at Boynton Beach and Fort Lauderdale, FL took place on May 11th and May 29th, 2012. Each of the nine diseased sponges from …

Long-Term Stony Coral Transplantation Success Offshore Southeast, Florida, Usa, Theresa Elizabeth Robitaille

HCNSO Student Theses and Dissertations

Transplanted coral (Order: Scleractinia) colony condition was surveyed at five injury event sites, two coral nurseries, and one impact minimization location off the coast of Broward County, Florida, USA in 2012. Because stony corals are long-lived and slow growing, generally growing less than one centimeter in diameter per year, determining transplantation success requires long-term (greater than two years) monitoring. Long-term monitoring efforts, however, are rarely completed. This study is unique in that it examined stony coral transplantation success of several projects over a time period of 6-17 years. Control colonies were also surveyed in order to compare naturally growing coral …

Methane Dynamics In St. Louis Bay, Mississippi, Hannah Marie Roberts

Master's Theses

A method of dissolved methane analysis was developed utilizing cavity ring-down spectroscopy and headspace equilibration. Samples of 70 mL were collected in 140 mL plastic syringes and equilibrated with a methane free headspace. Reproducibility was high (i.e. 4% typical RSD), and samples were successfully measured in the low nanomolar to high micromolar range. During method development, multiple research cruises were undertaken in the northern Gulf of Mexico. Stations included the Orca Basin, the Deepwater Horizon site, and the surrounding area. The Deepwater Horizon site showed no continuing leakage from October 2010 to June 2013. Samples collected from the northern Gulf …

Effects Of Selective Grazing By Microzooplankton On Phytoplankton Composition In A Subtropical Estuary, Amanda Marie Mcgehee

Master's Theses

Rates of phytoplankton growth and microzooplankton grazing were measured at two locations within the Bay of St. Louis, MS, over the course of three months to explore the dynamics of the phytoplankton community. Community growth rates were estimated based on the changes in chlorophyll a (chl a) concentration using the dilution technique, (Landry and Hassett, 1982) and a C-specific rate was obtained using chl a labeling (Redalje and Laws, 1981). Concentrations of chl a were determined using high performance liquid chromatography (HPLC) and fluorometry. HPLC was also employed to obtain class specific growth and grazing rates, using either marker pigments …

Characterization Of Rain And Stormwater Nitrogen Inputs To The Mississippi Sound: A Landscape Approach, Joshua Michael Allen

Master's Theses

Urbanization in coastal watersheds is becoming an increasingly important issue in the world. Increased impervious surface cover, a factor of urbanization, has drawn more attention to stormwater runoff as a source of contamination to receiving waters. In this study, nitrogen species from rain and stormwater were analyzed across three different landscape types along the Mississippi Sound (hardened, residential, and pristine), as well as from drainage pipes that flow directly into to the Mississippi Sound. Nitrogen stable isotopes were used to trace the stormwater nitrogen to the surface waters and biota within the Sound.

The objective of this study was to …

Loggerhead Sea Turtle (Caretta Caretta) Hatchling Disorientation In Broward County, Florida, Allison Durland Donahou

HCNSO Student Theses and Dissertations

Hatchling disorientation after emergence is a major factor impacting sea turtle populations. This study utilized data from over 1,200 Florida Fish and Wildlife Conservation Commission (FWC) Marine Turtle Disorientation Report forms from years 2006 to 2011 to assess changes in the severity and locations of disorientation events and the impact of municipal beach lighting ordinances. While the FWC forms were completed for all sea turtle species observed, this study focused only on loggerhead sea turtles (Caretta caretta). A Disorientation Severity Index (DSI) was derived from the number of hatchlings and the direction of their tracks leaving the nests …

Eyes In The Sky: Linking Satellite Oceanography And Biotelemetry To Explore Habitat Selection By Basking Sharks, Tobey H. Curtis, Stephan I. Zeeman, Erin L. Summers, Steven X. Cadrin, Gregory B. Skomal

Marine Sciences Faculty Publications

Background: Satellite-based oceanographic data products are a valuable source of information on potential resource availability for marine species. Satellite oceanography data may be particularly useful in biotelemetry studies on marine species that feed at low trophic levels, such as zooplanktivorous whales, sharks, and rays. The basking shark, Cetorhinus maximus, is a well-documented zooplanktivore in the western North Atlantic, yet little is known of its movements and spatial ecology in this region. A combination of satellite tag technologies were used to describe basking shark movements with respect to concurrent satellite-observed oceanographic conditions in order to test for selection of these …

Biophysical Interactions In The Straits Of Florida: Turbulent Mixing Due To Diel Vertical Migrations Of Zooplankton, Cayla Whitney Dean

HCNSO Student Theses and Dissertations

Diel vertical migrations (DVM) comprise the largest animal migration on the planet and are a phenomenon present in all bodies of water on Earth. A strong sound scattering layer undergoing DVM was observed in the Straits of Florida via a bottom-mounted Acoustic Doppler current profiler (ADCP) Workhorse Longranger 75 kHz (Teledyne RD Instruments) located at the 244 m isobath. ADCP average backscatter showed a clear periodicity corresponding with sunrise and sunset times indicating the presence of a nocturnal DVM. Analysis of the ADCP backscatter data indicated zooplankton swimming velocities were faster during sunrise than sunset times. In several cases the …

Organic Copper Binding Ligands And Thiol Compounds Produced By Bacteria And In The Elizabeth River, Virginia, Christina Louise Dryden

OES Theses and Dissertations

This dissertation presents work focusing on copper and organic copper binding ligands in laboratory cultures and the Elizabeth River, Virginia. Laboratory cultures of the marine bacterium Vibrio parahaemolyticus were used to demonstrate the influence of elevated copper concentrations on copper-complexing ligand and thiol production. Copper-complexing ligands similar in binding strength to the strongest natural ligands were detected in V. parahaemolyticus cultures (log K′_CuL = 11.8–13.2). A strong correlation (r² = 0.973) was found between total thiol and copper-complexing ligand concentrations at all copper concentrations examined.

A yearlong seasonal study was undertaken in a heavily polluted estuary to ascertain …

A Comprehensive Evaluation Of C25 Highly Branched Isoprenoid Alkenes Of Marine Diatoms As Proxies For Sea Ice Extent In The Arctic Ocean, Tetiana Muniak

OES Theses and Dissertations

Sea Ice extent is one of the major factors regulating carbon cycling and ecosystem function in the modern Arctic Ocean. It is an essential component of climate models and is crucial for the evaluation of various oceanographic processes that influence a particular region. Yet it is also one of the most difficult attributes of the ocean with respect to our ability for its accurate reconstruction from paleo records. The lack of the detailed records prior to satellite information has encouraged the development of new proxy records for the reconstruction of past

sea ice conditions. In recent years, a new monounsaturated …

Spatial And Temporal Variability In Net Community Metabolism In The Middle Atlantic Bight, Georges Bank, And Gulf Of Maine: Observations Of Net Heterotrophic Phases In The Highly Productive Coastal Zone, Cory James Staryk

OES Theses and Dissertations

Net community metabolism (NCM), the balance between primary production and community respiration, was measured during two cruises, June 2011 and August 2012, in the Middle Atlantic Bight, Georges Bank and Gulf of Maine. Net heterotrophy was observed in Georges Bank and Gulf of Maine during the June 2011 cruise. During the August 2012 cruise, net heterotrophy was observed in the Middle Atlantic Bight and net autotrophy was observed in Georges Bank and the Gulf of Maine. Dark community respiration increased (DCR) with biomass and temperature. Gross community production (GCP) also increased with Chl a, bicarbonate uptake, and temperature. Net …

The Saco River Plume: A Discussion Of The Near-Field Dynamics, Barbara A. Fortier

All Theses And Dissertations

This study focused on the freshwater discharge plume from the Saco River in southwestern Maine to determine the mechanisms responsible for the largest impacts on the near-field dynamics in this region. We examined the forcing factors that tended to increase the plume's spatial extent upshelf of the river mouth. Salinity, temperature, and density data were collected during cruises from May through November 2010 and by two surface moorings deployed upshelf of the Saco River mouth. We found a distinct variation in the latitude of the upshelf boundary of the plume during and after periods of high discharge. Furthermore, we found …