Oceanography Commons^™

Changes In Land, Ocean, Atmospheric Parameters Associated With The 2025 Myanmar (Mw 7.7) Earthquake, Feng Jing, Akshansa Chauhan, Ashwani Raju, Ramesh P. Singh

Mathematics, Physics, and Computer Science Faculty Articles and Research

Multiple parameters associated with the land, atmosphere, and ocean were analyzed to study short-term and immediate pre-earthquake changes associated with the 28 March 2025 Myanmar earthquake (Mw 7.7). Anomalous clear-sky outgoing longwave radiation (ClrOLR) and trace gases (CH₄, CO, and O₃) were detected within two months prior to the mainshock. Vertical changes at different pressure levels suggest a possible underground source. High-temporal-resolution observations of the infrared brightness temperature and surface air pressure revealed short-lived fluctuations shortly before the earthquake, which may reflect localized stress adjustments and surface latent heat flux release during the final stage of earthquake preparation. In the …

A Probabilistic Deep Learning Framework For Retrieving Chlorophyll-A From Hyperspectral Imagery: Integrating Channel Attention And Mixture Density Networks, Wenzhao Li, Surendra Maharjan, Rejoice Thomas, Junde Chen, Hesham Morgan, Michael J. Garay, Olga V. Kalashnikova, Shahryar Fazli, Charles Ichoku, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Accurate monitoring of Chlorophyll-a (Chla) is critical for assessing aquatic ecosystem health, yet ecological complexity often leads to ambiguous spectral signatures in satellite data. Traditional deterministic models assume a one-to-one mapping between spectra and pigments, often failing to capture these high-dimensional analytical challenges. In this study, we propose a novel deep learning architecture, the Channel Attention-Mixture Density Network (CA-MDN), to retrieve Chla from the National Aeronautics and Space Administration (NASA) Earth Surface Mineral Dust Source Investigation (EMIT) hyperspectral mission. The CA-MDN integrates an attention mechanism to dynamically select ecologically relevant spectral bands and employs a probabilistic output layer to quantify …

Chesapeake Bay Water Clarity: Challenges And Successes, Jessica S. Turner, Carl T. Friedrichs, David B. Parrish, Kelsey A. Fall

OES Faculty Publications

The Chesapeake Bay is a large estuarine system spanning multiple jurisdictions and serves as a model for estuarine health worldwide. Historically, nutrient loading degraded water quality, prompting the need for regulation. Water clarity, one component of water quality, is vital for benthic communities and serves as a key indicator of overall ecosystem health. Here, physical resuspension and salinity gradients, nutrient and sediment inputs, production of organic detritus by phytoplankton, and benthic communities all interact to drive clarity patterns, with high spatial variability. Trends over the last 50 years show improvement, though with a temporary increase in organic detritus in response …

Locations Of Outfalls In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_Outfalls_IRL_LWL.shp was created under grants from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon (IRL) and Lake Worth Lagoon (LWL).

The dataset presented here includes the location of outfalls identified throughout the study region and general characteristics of the shoreline where they were identified.

Seagrass Persistence In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly Kibler, Melinda Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_seagrasspersistence_IRL_LWL.shp was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon (IRL) and Lake Worth Lagoon (LWL). The dataset presented herein represents persistence of seagrass throughout waters of the IRL and LWL.

Living Shoreline Prioritization And Hydrodynamic Habitat Suitability Models For Restoration In The Indian River Lagoon And Lake Worth Lagoon, Florida, Kelly M. Kibler, Melinda J. Donnelly, Vincent Encomio, Madison Giuntoli, Manisha Thenuwara, Brice Bennett, Laura Andrade Barron, Mariam Sonbol, Wynter Raine Seppala, Namritha Ramakrishnan, Jennifer Jordan Báez, Beth Orlando, Irene Arpayoglou, Melissa Meisenburg

Indian River Lagoon Shorelines

The spatial dataset: UCF_shorelinemodel_IRL_LWL.shp, was created with support from the Indian River Lagoon National Estuaries Program and Florida Sea Grant. These projects cumulatively led to creation of a living shoreline restoration prioritization model and hydrodynamic habitat suitability models for 1,550 km (963 miles) of estuarine shorelines in Indian River Lagoon and Lake Worth Lagoon.

The dataset presented herein includes:

1. shoreline data from >15,000 transects collected in the field,
2. shoreline wave climate data created through hydrodynamic modeling and frequency analysis of historic data,
3. categorization of potential risk for shoreline boat wake impact,
4. persistence of seagrass within 210 m of the shoreline, …

Assessment Of Estuarine Respiration And Benthic Nutrient Fluxes In Mississippi Sound, Nur Pasha Sufian

Master's Theses

This study quantified seasonal and spatial variability of both water column and benthic respiration rates as well as benthic nutrient fluxes along the Mississippi Sound. Respiration was measured in recirculating incubation chambers using Firesting optical DO sensors (PyroScience GmbH), and changes in nutrient concentrations were assessed. Mean water column respiration rates ranged from 0.35 and 2.76 µM O₂ hr⁻¹, with the lowest rates in the winter and the highest in the summer while detectable nutrient concentrations (ammonium, (NH₄⁺), and soluble reactive phosphate (PO₄³⁻)) showed only slight decreases (< 1 µM) over all seasons. Sediment incubation chambers consistently had much greater oxygen declines than the water incubations and showed seasonal trends with the highest mean respiration rates measured in the summer and the lowest mean in the winter, with a range from 107.4 to 1514.9 µmol O₂ m⁻² hr⁻¹ (2.6 to 36.3 mmol O₂ m⁻² d⁻¹). Sediment incubations consistently showed increases in NH₄⁺ concentrations in the overlying water, resulting in calculated NH₄⁺ benthic flux rates of 0.73 to 379.01 µM N m⁻² hr⁻¹ with the lowest rates in the winter and highest rates in the summer. Although PO₄³⁻ concentrations were often below detection in cooler seasons, PO₄³⁻ flux also peaked during the summer (< 28.8 µmol P m⁻² hr⁻¹). In this study, temperature was a key regulator for estuarine respiration and benthic nutrient flux rates, and these rates were positively correlated with porewater nutrient concentrations and sedimentary organic matter. These findings illustrate that benthic respiration can contribute to water column hypoxia and that sediments serve as a source of nutrients to the water column. Overall, these findings provide us with valuable insight about the seasonal coupling of oxygen demand and nutrient flux in the Mississippi Sound and provide valuable baseline data for future biogeochemical modelling of hypoxia, eutrophication, and productivity.

Land Instability Compounds The Risk Of Sea Level Rise In Alexandria, Egypt, Rejoice Thomas, Sara Zouriq, Shahryar Fazli, Amr Fawzy, Nikolay Grisel Todorov, Surendra Maharjan, Wenzhao Li, Erik Linstead, Daniele Struppa, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

The coastal region of Alexandria Governorate in Egypt holds significant strategic importance for trade while being susceptible to extreme weather events. It confronts a dual challenge of the rising sea levels and, as found in this study, land instability. While much attention has been rightly directed towards sea level rise (SLR), the stability of the land warrants equal consideration. Here, a comprehensive analysis of land stability is conducted in Alexandria by measuring Line of Sight (LOS) displacements and assessing their topographical, hydrological, and coastal impacts. Persistent Scatterer Interferometry technique is used to measure the LOS displacements in association with land …

Transcriptional Profiles Reveal Physiological Mechanisms For Compensation During A Simulated Marine Heatwave In Yellowtail Kingfish (Seriola Lalandi), Sharon E. Hook, Ryan J. Farr, Jenny Su, Alistair J. Hobday, Catherine Wingate, Lindsey Woolley, Luke Pilmer

Fisheries Research Articles

Background

Changing ocean temperatures are already causing declines in populations of marine organisms. Predicting the capacity of organisms to adjust to the pressures posed by climate change is a topic of much current research effort, particularly for species we farm or harvest. To explore one measure of phenotypic plasticity, the physiological compensations in response to heat stress as might be experienced in a marine heatwave, we exposed Yellowtail Kingfish (Seriola lalandi) to sublethal heat stress, and used the transcriptome in gill and muscle, benchmarked against heat shock proteins and oxidative stress indicators, to characterise the acute heat stress …

Analyzing Seasonal Wind Trends And Climate Change Impacts Along The East Coast Of The United States (1990-2022), Avery L. Wilson

Honors Theses and Capstones

This study investigates long-term trends in ocean wind intensity and variability along the U.S. East Coast between 1990 and 2022 using ECMWF ERA5 reanalysis data. Focusing on monthly maximum, mean, and standard deviation (STD) of wind speed at 10 meters above the surface, linear regressions were performed to analyze long-term trends. Results indicate a significant increase in wind intensity and variability in the northeastern region, particularly during winter months, which may forecast more frequent and intense cyclonic activity such as Nor’easters. Conversely, a weak decreasing trend was observed in the south. These shifts have implications for ocean-atmosphere dynamics, including vertical …

An Economic And Production Analysis Of Seaweed Farms In California And The Pacific Northwest, Brian Donovan

Cal Poly Humboldt theses and projects

Since the early 2010s, the seaweed aquaculture industry has steadily expanded in the United States, with states like Alaska, Maine, Hawaii, and Connecticut leading the way in the development of this emerging sector. However, information gaps remain concerning certain aspects of the domestic seaweed aquaculture industry. The purpose of this study was to examine the status of the seaweed aquaculture industry along the West Coast of the United States; specifically in the states of California, Oregon, and Washington. Seaweed farmers in these states were invited to voluntarily complete surveys asking important production, economic, and commercial questions regarding their operations. Data …

Selective Nutrient Incorporation May Underestimate Heterotrophy Of A Mixotrophic Reef-Building Coral, Connor R. Love, Marleen Stuhr, Michael D. Fox, Veronica Z. Radice, Maoz Fine, Kelton W. Mcmahon, David L. Valentine

Biological Sciences Faculty Publications

Mixotrophic reef-building corals acquire nutrition via photosynthate translocation from endosymbiotic microalgae and by heterotrophic prey/particle capture. Heterotrophy promotes resistance to, and recovery from, environmental stress, but quantifying coral heterotrophy remains difficult due to complex resource exchanges within the coral holobiont. We interrogated the response of multiple biomarkers to coral heterotrophy using fatty acid profiling and stable isotope analysis of Stylophora pistillata grown along a controlled feeding gradient from pure autotrophy to pure heterotrophy. We found that fatty acids and nitrogen were effectively incorporated into both coral host and symbiont tissues, while carbon, which is the primary target for conventional heterotrophy …

Swimming In Sh*T: Quantifying Lagoon Flushing Impacts On Fecal Indicator Bacteria In Surf Zones Of Three Beaches On The East End Of Long Island, Ny, Brody C. Eggert

Pomona Senior Theses

This thesis investigates how lagoon flushing influences fecal indicator bacteria (FIB) concentrations—specifically enterococcus bacteria—in the surf zones of East Hampton and Southampton, New York. Focusing on the coastal lagoons of Georgica Pond, Sagg Pond, and Mecox Bay, the study analyzes how episodic inlet openings and environmental conditions affect enterococcus levels at adjacent recreational beaches. Using over 700 observations from the Surfrider Foundation’s Blue Water Task Force (BWTF) database, I construct a series of statistical models ranging from ordinary least squares to mixed effects frameworks; this thesis shows my process in developing this model. My analysis reveals that open inlets between …

A Generalized Machine Learning Model For Long-Term Coral Reef Monitoring In The Red Sea, Justin J. Gapper, Surendra Maharjan, Wenzhao Li, Erik Linstead, Surya Prakash Tiwari, Mohamed A. Qurban, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Coral reefs, despite covering less than 0.2 % of the ocean floor, harbor approximately 35 % of all known marine species, making their conservation critical. However, coral bleaching, exacerbated by climate change and phenomena such as El Niño, poses a significant threat to these ecosystems. This study focuses on the Red Sea, proposing a generalized machine learning approach to detect and monitor changes in coral reef cover over an 18-year period (2000–2018). Using Landsat 7 and 8 data, a Support Vector Machine (SVM) classifier was trained on depth-invariant indices (DII) derived from the Gulf of Aqaba and validated against ground …

Linkages Of The 2022 Unprecedented Global Heatwave Events To Triple-Dip La Niña, Sachi Perera, Joshua B. Fisher, Mohamed Allali, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Heatwaves are influenced significantly by El Niño-Southern Oscillation (ENSO), which alters temperature and precipitation patterns throughout the world. Since 2020, we have witnessed a "triple dip" La Niña conditions persisting for three consecutive years resulting in severe weather and climate driven events globally. In this study, we identified the dominant frequency of Niño 3.4 Sea Surface Temperature (SST) signals and correlated them with regions experiencing unprecedented heat waves in 2022, namely, the Indian Ocean, the North Atlantic around England and Spain, and the Mediterranean Sea. The signal's power spectrum and its three highest power components are determined based on the …

Heavy Metals Implications To Sediment Microbiome And Coral Response To Arsenic Dosing, Dimitrios G. Giarikos, Amy Hirons, Jose V. Lopez, Abigail Renegar, Jason Gershman

SECLER Data

No abstract provided.

Assessing The Impacts Of Anthropogenic Activities On Coral Reef Health In Ushongo, Tanzania Using Coral Diversity And Parrotfish Abundance As Indicators, Thao Mai

Independent Study Project (ISP) Collection

Coral reefs, covering two-thirds of our oceans, are vital and diverse ecosystems, earning them the nickname of “rainforests of the sea”. Despite occupying only 1% of the ocean’s floor, they support 25% of all marine species, providing shelter, nursery ground and food, all the while also protecting the coast and providing job opportunities for local communities. Considered keystone species, coral reefs are highly sensitive to disturbances caused by pollution, climate change, but also anthropogenic activities such as coastal development, destructive fishing practices and tourism, endangering their existence and the entire marine ecosystem. Parrotfish, a crucial resident of these ecosystems, often …

Early Report Of A Microcosm Of The Fourth Major Global Bleaching Event: A Comprehensive Survey Of Coral Bleaching At Chumbe Island Coral Park, Zanzibar, Christian Boudreaux

Independent Study Project (ISP) Collection

Coral reefs harbor a wealth of the biodiversity present in the ocean. They provide an array of ecological and economic services that make them crucial to the function of a healthy ocean and prosperous coastal communities. Due to an array of anthropogenic stressors, including an increase in ocean temperatures as a result of climate change, reefs have been devastated worldwide. This is, in large part, due to the process of coral bleaching, the expelling of symbiont algae which the coral needs to produce energy, for an extended period until death. This study surveyed bleaching and death at a deeper and …

Assessing The Impact Of Climate Change On Harbor Seals: Haul-Out Patterns In Iceland Using Cmip6 Projections, Colin Lau

Independent Study Project (ISP) Collection

Harbor seals (Phoca vitulina) are known to exhibit a preference for specific environmental and weather conditions when hauling out, particularly during the pupping and molting cycles during summer. Climate change is projected to have a significant impact on the haul-out patterns and site conditions of harbor seals in Iceland, which could further diminish their dwindling population. A comprehensive literature review was conducted to identify and discuss the environmental variables that can affect haul-out probability. Among them, surface wind speed and air temperature are reported to have the biggest influence on harbor seal haul-out numbers between May and August. Climate projections …

Feasibility Study Of Coral Farming In Southwest Madagascar: In-Situ And Ex-Situ Approaches, Raquel Reis

Independent Study Project (ISP) Collection

The southwest coast of Madagascar is home to hundreds of miles of coral reefs that for decades have been susceptible to intense degradation due to anthropogenic influences on marine environments. For reasons involving economic opportunity, conservation strategies, human health safeguarding and advancements to coral research, coral aquaculture in the Toliara region presents an opportunity to restore quality of life and the environment. Other countries in the west Indian ocean have seen great success in coral aquaculture; however, Madagascar, despite having ideal natural circumstances, has not deeply explored coral aquaculture. This review presents an investigation into the feasibility of coral farming, …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Community Knowledge Of Shark Ecology, Abundance, And Species Composition In Wichubwala, Nalunega, And Porvenir Communities In The Guna Yala Comarca, Panamá, Kayley Jane Porter

Independent Study Project (ISP) Collection

Sharks play a critical role in marine ecosystems as apex predators that exert top-down control of lower trophic levels. In recent decades, global shark populations have declined to unprecedented levels, triggering a cascade effect that threatens ecosystem functioning and, therefore, coastal community livelihoods that rely on marine resources for food and income. It is known that shark populations are vulnerable and on the decline due to anthropogenic stressors such as fishing and coastal development, but shark species composition and abundance are difficult to monitor due to the evasive nature of sharks, the often remote and inaccessible location of certain shark …

Investigating Ocean Carbonate System Changes Across Latitudes In The North Atlantic Basin With A Time-Series Mooring System, Anna Trujillo

Independent Study Project (ISP) Collection

The world ocean, specifically the Arctic, serves as one of the greatest mitigators for anthropogenic carbon dioxide release, making the study of high latitude ocean carbonate chemistry an increasingly important topic. While much work has been done concerning the science of acidification and future model projections, analyzing data to detect decadal anthropogenic trends and effects is also highly important. Aiming to add to this data pool, this study investigated the ocean carbonate system at three North Atlantic mooring locations at polar, subtropical, and tropical latitudes from 2013 - 2021. Time series datasets of the pH and pCO₂ of surface water …

Drone-Based Topographic Monitoring Of The Doheny Beach Replenishment Project As An Alternative To Land-Based Monitoring, Miller Mccraw

CMC Senior Theses

The rising threat of coastal erosion to California’s beach ecosystems and economy has fueled a rise in coastal stabilization projects, including beach replenishment. This process’s potentially adverse impact on a beach’s topography and ecosystem makes post-replenishment monitoring essential for long-term coastline management. Drone-based monitoring presents itself as a faster, cheaper, and safer alternative to traditional post-replenishment monitoring but has little proof of concept as a practical substitute. This study used drone-based photogrammetry coupled with publicly available wave data to track elevation changes at Doheny and San Capistrano Beach after a beach replenishment project to both determine the beach’s resilience to …

Investigating The Effects Of A Southward Flow In The Southeastern Florida Shelf Using Robotic Instruments, Alfredo Quezada

All HCAS Student Capstones, Theses, and Dissertations

We deployed a Slocum G3 glider fitted with an acoustic Doppler current profiler (ADCP), a Conductivity-Temperature-Depth sensor (CTD), optics sensor channels, and a propeller on the Southeastern Florida shelf. The ADCP and CTD provide continuous measurements of Northern and Eastern current velocity components, salinity, temperature, and density, throughout the water column in a high-current environment. The optics sensor channels are able to provide measurements of chlorophyll concentrations, colored dissolved organic matter (CDOM), and backscatter particle counts. Additionally, for one of the glider deployments, we deployed a Wirewalker wave-powered profiling platform system also fitted with an ADCP and a CTD in …

The Uses And Limitations Of Citizen Science For Monitoring The Australian Grey Nurse Shark (Carcharias Taurus) Population, Leah Corckran

Independent Study Project (ISP) Collection

iNaturalist is a citizen science photographic database, which is an underutilized resource in photographic identification research studies. Grey nurse sharks are critically endangered and there is a lack of knowledge regarding the estimated population size, longevity, and interactions with fisheries of this species off the coasts of Australia. To determine how photos submitted to iNaturalist can be used in Carcharias taurus conservation, the photographs were evaluated on a number of criteria including: location, date, visibility of spot patterns, visible sex characteristics, and visible injuries. In total, 814 photographs of grey nurse sharks were obtained from the iNaturalist database. Only 23.2% …

Extent Of The 2023 Coral Bleaching Event In The Nargana Region Of Guna Yala, Panama, Brydon Deanna Hollander

Independent Study Project (ISP) Collection

Coral reefs are diverse marine ecosystems that exist in tropical ecosystems all over the world. They provide a myriad of ecological services that are vital for marine organism biodiversity and human coastal communities. A major threat to coral reefs is a rise in sea surface temperature that causes coral bleaching. The effect of a coral bleaching event in Nargana, Guna Yala will be investigated to examine how the health status of coral reef ecosystems are being impacted. To guide these efforts, the extent of coral bleaching will be measured along with whether sea surface temperature (SST), human concentration, and El …

Við Pollurinn: The Effects Of Human-Caused Stimuli On Harbor Seals (Phoca Vitulina) In Ísafjörður, Ella Jorgensen

Independent Study Project (ISP) Collection

Harbor seals are important for the health of Iceland’s marine ecosystems. They are normally seen hauled-out onto land to rest. There are many factors that affect the haul-out patterns of harbor seals including location, season, time of day, tide height, weather, and human-caused stimuli. The presence of human-caused stimuli can also have a negative impact on haul-out patterns and behaviors. The Icelandic harbor seal population is threatened as it has been declining since 1980. Climate change and the rise of tourism in Iceland may be a factor contributing to this decline; and there is a gap in knowledge on the …

Organism Communities On Giant Clam Shells As Compared To The Surrounding Substrate In Reefs Around Lizard Island, Queensland, Gayatri Singla

Independent Study Project (ISP) Collection

Coral reef ecosystems are facing destruction at the hands of anthropogenic climate change. Therefore, it is essential that we move to better understand the ecosystem functions of the organisms present in reefs. One such family whose ecosystem function we are unfamiliar with are the giant clams (family Cardiidae). As unique and abundant macrofauna, they have the potential to play an important role in their environment. The goal of our study was to determine how giant clams function as settlement substrata. We conducted 151 observational surveys of epibionts residing on living giant clam shells and of the organism communities in the …

Estimating Blue Carbon Stocks In Native And Non-Native Seagrass Beds Of Jobos Bay, Pr, Michael Chapman, Raven Winant, Kayla Gonzalez-Boy, Mark Mccarthy, Ángel Dieppa-Ayala

Symposium of Student Scholars

Seagrasses are keystone species that support coastal biodiversity, but not all species of seagrasses provide the same ecosystem services. Although seagrasses occupy a small area of marine habitat, they provide many ecosystem services. They stabilize sediments, remove nutrients, provide habitat and food for diverse marine life, and promote carbon storage in sediments. Jobos Bay is the second largest estuary in Puerto Rico and contains salt marshes, mangroves, and seagrass beds. The native seagrass, Thalassia testudinum, is the most abundant seagrass in the bay; however, a seagrass species from the Indian Ocean, Halophila stipulacea, began invading in recent years. The impacts …