Oceanography Commons^™

A Preliminary Investigation Of Research Collaboration Through Scientific Paper Co-Authorship In The Gulf Of Mexico, Juliet Vallejo, Evelyn Roozee, Dongkyu Kim, Andrew M. Song, Christopher A. Gabler, Jasper R. De Vries, Antonia Sohns, Gordon M. Hickey, Owen Temby

School of Earth, Environmental, & Marine Sciences Faculty Publications

It is well known that publications with collaborators from external institutions increase citations. This effect scales with spatial distance. There are also many barriers to long-distance collaborations, including linguistic differences, funding constraints, and the incremental costs of remote collaboration. This paper uses the Gulf of Mexico as a case study to examine long-distance research collaboration because it consists of three countries with diverse development levels and two prominent diplomatic languages, within a singular regional ecosystem of tremendous natural and economic value. This paper uses bibliometric network analysis to examine scientific research article co-authorship in the Gulf of Mexico from 2000 …

Prevalence, Faunal Composition, And Vertical Distribution Of Bioluminescence In The Pelagic Gulf Of Mexico: Fishes, Crustaceans, Cephalopods And Gelatinous Megaplankton, Devynne M. Brown

All HCAS Student Capstones, Theses, and Dissertations

Bioluminescence is the phenomenon of light emission by living organisms. It occurs through a chemical reaction within an organism and serves various purposes. The diversity of bioluminescent capabilities and occurrence in unrelated taxa suggest that bioluminescence has evolved independently numerous times amongst taxa thriving in certain environments. One such environment is the deep ocean, where little to no sunlight penetrates the water column, specifically in the mesopelagic (200-1000 m depth) and bathypelagic (> 1000 m) zones. The mesopelagic and bathypelagic zones have been extensively sampled and well documented in the Gulf of Mexico (GoM), one of the few places globally …

Tropical Cyclone And Ocean-Atmosphere Interactions In The Gulf Of Mexico, Emily Nichole Eley

Theses and Dissertations

The Gulf of Mexico (GoM) is historically a favorable region for the formation, maintenance and intensification of tropical cyclones that frequently evolve into powerful hurricanes. These natural disasters threaten the basin’s innate habitat and wildlife diversity, and the expansive coastal economies and communities. The dominant ocean circulation feature in the GoM is the Loop Current System (LCS) which includes the Loop Current (LC) and its associated mesoscale eddy field. The LC originates at the Yucatán Channel, loops anticyclonically into the basin, and ends at the Florida Straits; further it produces both anticyclonic and cyclonic eddies. The existence of the LCS …

Ocean Eddies And Frontal Zones In The Gulf Of Mexico And Straits Of Florida, Yingjun Zhang

USF Tampa Graduate Theses and Dissertations

Ocean eddies and fronts in the Gulf of Mexico (GoM) and the Straits of Florida (SoF) play important roles in ocean physics, biology, and ecology. These two ubiquitous physical features have been studied worldwide for decades, yet many questions remain unanswered or poorly studied for the GoM and SoF. This study aims to improve the understanding of ocean eddies and frontal zones in the GoM and SoF using satellite remote sensing, in situ observations and model outputs, as well as state-of-the-art algorithms, with the following objectives: 1) analyze the three-dimensional (3-D) statistical characteristics and thermohaline structure of mesoscale eddies in …

Mid-Breton Sediment Diversion (Mbrsd) Assessment – Final Report, Jerry D. Wiggert, Brandy N. Armstrong, M. Kemal Cambazoglu, Sandeep Kalathupurath Kuttan

Faculty Publications

The purpose of this project is to provide managers at the Mississippi Department of Marine Resources (MDMR) with the scientific information needed to accurately address public concerns regarding the potential effects of the Louisiana Coastal Master Plan / Coastal Protection and Restoration Authority (CPRA) Mid-Breton Sediment Diversion (MBrSD) on the jurisdictional waters and resources of Mississippi. The stated design purpose of the MBrSD is to reconnect and re-establish the deltaic sediment deposition process between the Mississippi River and the Breton Sound Basin through a diversion that will deliver up to 75,000 cfs of sediment-laden freshwater. The report presented herein provides …

Small-Scale Resuspension And Redistribution Of Surface Sediments In The Northeast Gulf Of Mexico, Austin Harris

Master's Theses

Following the release of ~4.9 million barrels of oil into the Gulf of Mexico from the Macondo wellhead, a vast area of the seafloor contained recently deposited marine sediments contaminated by the oil spill. The initial deposition of these contaminated marine sediments was likely not the end of the journey for the particles. Downslope gravitational processes and events of increased current speed in the deep ocean setting can result in recently deposited sediments to resuspend and be moved laterally with the current flow, increasing the area effected by the oil spill. Erosion experiments performed in a closed-loop resuspension flume were …

Microplankton Dynamics In The River-Dominated Mississippi Bight, Adam D. Boyette

Dissertations

The Mississippi Bight (MSB) is a river-dominated continental margin influenced by multiple large river systems, including the Mississippi River, Alabama and Tombigbee rivers via Mobile Bay, and numerous smaller rivers, creeks, and bayous. This is part of a biologically-rich ecosystem that supports the second largest fishery industry by volume in the United States. Despite our understanding of the linkages between primary production with higher trophic levels, there remains limited studies quantifying these trophic interactions in this system. Microplankton (µm) community dynamics and trophic connectivity between primary producers and heterotrophic protists represent a critical nexus influencing overall biological productivity in this …

Assessing The Real-Time Lagrangian Predictability Of The Operational Navy Coastal Ocean Model In The Gulf Of Mexico, Lea Kristen Locke

Dissertations

This study quantitatively assesses the drift predictive skill of Fleet Numerical Meteorology and Oceanography Center’s (FNMOC’s) operational ocean models which are used to support a wide range of military and civilian applications. Overall, the findings of this work support the recommendation of spatial filtering for regional-scale ocean model velocity fields used in deep-water drift applications. In conjunction with filtering, the use of a pure particle drift algorithm is suggested for short-term forecasts and a drift algorithm including a sub-grid scale, random flight, parameterization for predictions requiring extended forecast predictions.

Drift prediction skill is quantified through metrics of in-cloud percentage, distance …

Elevating Dissolved Oxygen—Reflections On Developing And Using Long-Term Data, Nancy N. Rabalais

Gulf and Caribbean Research

This prospectus took me about as long to generate as my 36—year record of working on the issue of northern Gulf of Mexico (nGOM) oxygen deficiency, or so I felt. There was so much to cover, but I focused on the issue of hypoxia on the Louisiana continental shelf from the early 1980s to present and my participation in the research and outreach. Not that I was ignoring other aspects of my academic research career (e.g., stone crab populations and their differences in physiology and larval development along the nGOM coast; settlement of crab megalopae, especially blue crabs, on artificial …

Monitoring 2019 Bonnet Carré Spillway Impacts - Final Report, J. Read Hendon, Jerry D. Wiggert, Jill Hendon

Faculty Publications

Due to the multiple and extended openings of the Bonnet Carré Spillway in 2019, the University of Southern Mississippi (USM) was tasked by the Mississippi Department of Marine Resources to conduct ecological sampling in the Mississippi Sound and adjacent waters. in an effort to better understand the impacts of the extensive freshwater diversion of Bonnet Carré Spillway operations on Mississippi's coastal and marine resources. The period of performance for this project was June 1, 2019, to August 31, 2019. This technical report summarizes the three months of weekly surveys and analyses, over June - August 2019, conducted by the University …

Bonnet Carré Spillway Freshwater Transport And Corresponding Biochemical Properties In The Mississippi Bight, Sabrina M. Parra, Virginie Sanial, Adam D. Boyette, M. Kemal Cambazoglu, Inia M. Soto, Adam T. Greer, Luciano M. Chiaverano, Angie Hoover, Michael S. Dinniman

CCPO Publications

Large freshwater pulses to coastal ecosystems change local hydrologic regimes and alter biogeochemical processes. The Mississippi Bight coastal ecosystem, located in the northern Gulf of Mexico shelf, is influenced by extensive freshwater inputs: the Mississippi River (MSR) and several smaller rivers to the east. Under river flood conditions, MSR waters flow through the Bonnet Carré Spillway (BCS) to relieve pressure on levees in New Orleans, Louisiana. In 2015, mild wintertime temperatures and heavy rainfall throughout the MSR watershed led to extreme flooding and prompted an unusually early BCS opening on January 10, 2016 for 23 days. This study examines the …

Phytoplankton And Carbon Dynamics In The Estuarine-Coastal Waters Of The Northern Gulf Of Mexico From Field Data And Ocean Color Remote Sensing, Bingqing Liu

LSU Doctoral Dissertations

In this study, phytoplankton community and carbon dynamics were examined in the optically complex estuarine-coastal regions of the northern Gulf of Mexico (nGOM) from field and satellite ocean color observations. As part of this study, bio-optical ocean color algorithms for i) dissolved organic carbon (DOC), ii) phytoplankton pigment composition, iii) adaptive estimation of Chl a and iv) phytoplankton size fractions were developed to facilitate the study of biogeochemical cycling in the nGOM.

The phytoplankton based algorithms were applied to Sentinel 3A/B-OLCI oean color data to assess phytoplankton community dynamics to extreme river discharge conditions as well as hurricanes in the …

Simulating Wave Dynamics In The Northern Gulf Of Mexico And Barataria Pass, Azadeh Razavi Arab

LSU Master's Theses

The coastal wetlands of Louisiana constitute ~40% of the wetlands in the United States. However, it suffers from 80% of the wetland losses in the whole country. In shallow coastal and estuarine environments, bed shear stresses related to wind waves contributes substantially to the edge erosion in the northern Gulf of Mexico (NGoM). Therefore, wave simulations in shallow estuarine areas are of great importance.

There are several challenges in simulating waves nearshore, especially over the shallow and nearly horizontal sea beds typical of the NGoM continental shelf and adjacent complex geometry estuaries: determination of the appropriate wind forcing dataset to …

Gulf Coast Marine Laboratories Past, Present And Future, Donald F. Boesch

Gulf and Caribbean Research

I spent my nearly 50—year career in marine science working at marine laboratories, most of that as a chief executive officer. So, it is appropriate that my reflections are about marine laboratories, rather than my own science. After relating my career course, I turn my attention to the history and development of marine laboratories along the U.S. coast of the Gulf of Mexico (GOM). Surprisingly, the region’s first laboratory was actually constructed in 1903 at Cameron, LA, but operated less than a decade before closing. It was not until after World War II that the university—affiliated marine laboratories of today …

The Variability Of High-Frequency Motions And Their Interactions With The Mesoscale On The Mississippi Shelf, Jordan Earls

Master's Theses

In this study, we examine the spatial and temporal variability of high-frequency and low-frequency motions across the Mississippi Shelf and how the high-frequency motions are modulated by low-frequency mesoscale motions. For this purpose, we use Acoustic Doppler Current Profiler (ADCP) measurements collected at nearshore (23 m), mid-shelf (60 m), and shelf break (88 m) stations. High-frequency motions are defined as motions with periods less than 36 hours, whereas mesoscale motions have larger periods. The collected datasets are analyzed through bandpass filtering, least square harmonic analysis, spectral analysis, and empirical orthogonal functions (EOF). We find that along-shelf barotropic mesoscale motions contain …

Geotraces And Beyond: Studies Of Trace Elements In Coastal And Open Ocean Waters With An Emphasis On The Effects Of Oxygen Depletion And Hydrothermal Plumes, Peng Ho

Dissertations

We investigated various dissolved trace element (dTE) distributions in two distinct areas: the coastal northern Gulf of Mexico and the eastern tropical Pacific Ocean.

A multi-year (2007‒2011) chemical time series of eight stations in the western Mississippi Sound (MS) and northwestern Mississippi Bight (MB) was undertaken to examine the factors affecting chemical distributions in this dynamic region. Key findings include the frequent development of bottom water hypoxia in MB during late spring-summer, the likely contribution of submarine groundwater discharge (SGD) to the material flows, and observation of effects of episodic events including tropical storms and the opening of the Bonnet …

The Feasibility Of Using Inherent Optical Properties And The Apparent Optical Property Remote Sensing Reflectance To Estimate Suspended Particulate Matter, Particularly For Use In Airborne Hydrographic Surveys, Sarah Epps

Dissertations

Airborne hydrographic surveys are routinely used to create and update nautical charts around the world. This research is intended to assist in maximizing the utility of the data products made available from those surveys in accordance with the current survey–once, use–many–times initiatives. Specifically, this project evaluates the feasibility of using the data available airborne hydrographic systems that utilize bathymetric lasers and hyperspectral sensors to estimate the concentration of suspended particulate matter (SPM). SPM is sometimes also called suspended sediment. The ability to chart spatial distributions of SPM utilizing hydrographic survey systems already in operation will assist researchers, managers, and stakeholders …

Spatial And Temporal Distributions Of Pelagic Sargassum In The Intra-Americas Sea And Atlantic Ocean, Mengqiu Wang

USF Tampa Graduate Theses and Dissertations

Pelagic Sargassum is one type of marine macroalgae that is known to be abundant in the Gulf of Mexico and Sargasso Sea. It is also known to serve as a critical habitat for many marine animals. In the past few years, large amounts of Sargassum have been reported in the Tropical Atlantic and Caribbean Sea (CS), causing significant environmental and economic problems. The goal of this study is to improve the understanding of Sargassum distributions, quantity, transport pathways, and bloom mechanisms in the CS and Tropic Atlantic through combining a variety of techniques including satellite remote sensing, field and laboratory …

A Novel Multiproxy Approach To Reconstructing Sea Surface Temperature In The Southwestern Gulf Of Mexico, Marissa Anne Vara

LSU Master's Theses

Coral Sr/Ca is a widely-used proxy for sea surface temperature (SST); however, discrepancies in the coral Sr/Ca-SST relationship among colonies of the same species makes uncertainty in absolute temperature reconstructions larger than the climate signal yet climate variability studies are possible. Furthermore, the riverine input of terrestrial carbonate weathering products to the coastal waters can disrupt the coral Sr/Ca-SST signal by changing local seawater chemistry. This study evaluates the fidelity and reproducibly of coral SST proxies (Sr/Ca, Li/Ca, Mg/Li, Sr-U, Mg/Ca, and U/Ca) and a riverine-upwelling proxy (Ba/Ca) in four Orbicella faveolata colonies in two reefs offshore from Veracruz, Mexico …

Concorde Meteorological Analysis (Cma) - Data Guide, Patrick Fitzpatrick, Yee H. Lau

Faculty Publications

CONCORDE is the CONsortium for oil spill exposure pathways in COastal River-Dominated Ecosystems (CONCORDE), and is an interdisciplinary research program funded by the Gulf of Mexico Research Initiative (GoMRI) to conduct scientific studies of the impacts of oil, dispersed oil and dispersant on the Gulf’s ecosystem (Greer et al. 2018). A CONCORDE goal is to implement a synthesis model containing circulation and biogeochemistry components of the Northern Gulf of Mexico shelf system which can ultimately aid in prediction of oil spill transport and impacts.

The CONCORDE Meteorological Analysis (CMA) is an hourly gridded NetCDF dataset which provides atmospheric forcing for …

Ecological And Oceanographic Influences On Leatherback Turtle Behavior And Scyphozoan Jellyfish Distributions In The Gulf Of Mexico, Katrina Aleksa

Dissertations

Leatherback turtles (Dermochelys coriacea) are a wide-ranging, oceanic species that feed exclusively on gelatinous zooplankton. Leatherback have been spotted in the Gulf of Mexico (GoM) for several decades and consistently had a high level of interactions with longline fisheries. However, no quantitative studies have been performed to address the spatiotemporal distribution of these turtles in the GoM. This research determines 1) leatherback movements and high-use areas in the GoM, 2) their association with oceanographic features, 3) the distribution and density of two abundant medusae in the northern GoM and any association with biophysical parameters, and 4) the body …

Environmentally-Driven Variation In The Population Dynamics Of Gulf Menhaden (Brevoortia Patronus), Grant D. Adams

Master's Theses

Gulf Menhaden (Brevoortia patronus) is an abundant forage fish distributed throughout the Northern Gulf of Mexico (NGOM). Gulf Menhaden support the second largest fishery, by weight, in the United States and represent a key linkage between upper and lower trophic levels. Variation in the population dynamics can, therefore, pose consequences for the ecology and economy in the NGOM. Here we aim to understand variation in the individual and population dynamics of Gulf Menhaden throughout ontogeny and how such variation relates to environmental processes. We utilized a suite of fishery-dependent and –independent, remote sensing, modeled, and in situ data …

Loop Current Spin-Off Eddies, Slope Currents And Dispersal Of Reef Fish Larvae From The Flower Gardens National Marine Sanctuary And The Florida Middle Grounds, Donald R. Johnson, Harriet Perry, Guillermo Sanchez-Rubio, Mark A. Grace

Gulf and Caribbean Research

Large energetic spin—off eddies from Loop Current intrusions into the Gulf of Mexico play a major role in water exchange between the continental shelf and the deep basin in the northern Gulf. Reef fish larvae, spawned on the outer shelf and planktonic during their early life history, are broadly dispersed by this mechanism, but may be lost to the cohort by transport away from suitable settlement habitat. In this study, satellite altimeter data—assimilative ocean model currents (HYCOM) from 2003—2015 are used to calculate kinetic energy of the mixed layer over the upper continental slope (200 m —1000 m) due to …

Determining The Viability Of Recent Storms As Modern Analogues For North-Central Gulf Of Mexico Paleotempestology Through Sedimentary Analysis And Storm Surge Reconstruction, Joshua Caleb Bregy

Master's Theses

The northern Gulf of Mexico has been devastated by recent intense storms. Camille (1969) and Katrina (2005) are two notable hurricanes that made landfall in virtually the same location in Mississippi. However, fully understanding the risks and processes associated with hurricane impacts is impeded by a short and fragmented instrumental record. Paleotempestology could potentially use modern analogues from intense storms in this region to extend the hurricane record back to pre-observational time. Existing empirically based models can back-calculate surge heights over coastal systems as a function of transport distance, particle settling velocity, and gravitational acceleration. We collected cores in a …

Macrobenthic Communities In The Northern Gulf Of Mexico Hypoxic Zone: Testing The Pearson-Rosenberg Model, Shivakumar Shivarudrappa

Dissertations

The Pearson and Rosenberg (P-R) conceptual model of macrobenthic succession was used to assess the impact of hypoxia (dissolved oxygen [DO] ≤ 2 mg/L) on the macrobenthic community on the continental shelf of northern Gulf of Mexico for the first time. The model uses a stress-response relationship between environmental parameters and the macrobenthic community to determine the ecological condition of the benthic habitat. The ecological significance of dissolved oxygen in a benthic habitat is well understood. In addition, the annual recurrence of bottom-water hypoxia on the Louisiana/Texas shelf during summer months is well documented.

The P-R model illustrates the decreasing …

Polycyclic Aromatic Hydrocarbon Metabolites As A Biomarker Of Exposure To Oil In Demersal Fishes Following The Deepwater Horizon Blowout, Susan Susan Snyder

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20th, 2010, releasing 4.9 million barrels of Louisiana crude oil into the Gulf of Mexico (GoM). Subsequent to the Deepwater Horizon blowout, sediment cores revealed oil on the northern GoM seafloor and abnormal skin lesions were seen in GoM fishes. Exposure to polycyclic aromatic hydrocarbons (PAHs), a component of crude oil, in fish has been associated with many sublethal effects, including cancer and population-level effects. Using a biomarker of exposure to PAHs, this thesis evaluates inter-species, temporal and spatial differences in exposure to hydrocarbon contamination between three species of fish with varying levels …

Implications Of Climate Change For Cyanobacteria Over The Western Florida Shelf In The Gulf Of Mexico, Ivy Mara Ozmon

OES Theses and Dissertations

Concentrations of atmospheric CO₂ are expected to double by year 2100 as a result of anthropogenic activities. Under elevated CO₂ conditions, cyanobacteria may reallocate energy from active accumulation and transport of dissolved inorganic carbon (C) required for photosynthesis to other growth processes. Stimulation of cyanobacterial production on the Western Florida Shelf in the Gulf of Mexico (GOM) could lead to improved nutritional status for the toxic, mixotrophic dinoflagellate Karenia brevis that utilizes newly fixed N₂ from co-occurring diazotrophic cyanobacteria and consumes unicellular cyanobacteria via grazing for growth. Culture studies performed by other researchers on the climate induced …

Exploration Of Biophysical Interactions Associated With Mesoscale Variability In The Central Gulf Of Mexico, Katharine Celeste Woodard

Master's Theses

Bio-physical coupling in the Gulf of Mexico (GMx) is explored in this research using an integrated satellite sensor approach. Physical features are identified using Sea Level Anomaly (SLa) produced by Archiving, Validation, and Interpretation of Satellite Oceanographic data (AVISO). Biological characteristics of the GMx have been recognized as ocean color identified by the satellites SeaWiFS and MODISA. A climatology data set and a chlorophyll anomaly (CLa) was made using the 14-year mean determined from the ocean color files. The hypotheses are that there will be an inverse relationship between SLa and CLa, that mesoscale SLa features will significantly modulate local …

Fish Species Distribution In Seagrass Habitats Of Chesapeake Bay Are Structured By Abiotic And Biotic Factors, Jason J. Schaffler, Jacques Van Montfrans, Cynthia M. Jones, Robert J. Orth

OES Faculty Publications

Seagrass habitats have long been known to serve as nursery habitats for juvenile fish by providing refuges from predation and areas of high forage abundance. However, comparatively less is known about other factors structuring fish communities that make extensive use of seagrass as nursery habitat. We examined both physical and biological factors that may structure the juvenile seagrass-associated fish communities across a synoptic-scale multiyear study in lower Chesapeake Bay. Across 3years of sampling, we collected 21,153 fish from 31 species. Silver Perch Bairdiella chrysoura made up over 86% of all individuals collected. Nine additional species made up at least 1% …

Grazing On Synechococcus Spp. By The Red-Tide Dinoflagellate Karenia Brevis: Implications For Bloom Dynamics In The Gulf Of Mexico, Leo A. Procise

OES Theses and Dissertations

Karenia brevis, the toxic dinoflagellate responsible for massive red tides in the Gulf of Mexico (GOM), causes fish kills, shellfish poisoning, and acute respiratory irritation in humans. Bloom initiation and maintenance have been linked to the physical environment as well as various nutrient input mechanisms. To date, efforts to quantify nitrogen (N) sources fueling K. brevis blooms in the GOM have not included mixotrophic grazing although many dinoflagellates, including K. brevis, are known to be capable of mixotrophy. This dissertation reports field and laboratory results demonstrating that natural bloom populations and K. brevisisolates from the West Florida …