Oceanography Commons^™

Data Improved Models Applied To Essential Oceanographic Processes In Rhode Island Coastal Waters, Ainsley Fruhwirth

Open Access Master's Theses

The Ocean State Ocean Model (OSOM), funded and developed through the National Science Foundation’s (NSF) Established Program to Stimulate Competitive Research (EPSCoR), was designed to simulate the physical dynamics of Rhode Island’s estuaries and shelf waters. However, the model struggled to capture key features of summer circulation in Rhode Island Sound (RIS), most notably the westward flowing coastal current and vertical stratification profile found in May through September. Significant errors in modeled lateral and vertical density gradients indicated that the thermohaline structure, physical mixing parameters, and forcing inputs required comprehensive revision. Using historical datasets from the National Oceanic and Atmospheric …

Amino Acid Isotope Dynamics And Associated Ecological Metrics Across Accretionary Tissues Of Marine Fishes, Sofia Piccone

Open Access Master's Theses

Compound-specific isotope analysis of amino acids (CSIA-AA) applied to the organic growth layers of accretionary fish tissues, including eye lenses, otoliths, and scales, has made it possible to reconstruct histories of fish physiology, ecology, and environmental conditions. Yet it remains uncertain whether amino acid isotope values, and the ecological information they contain, are conserved across these archival tissues or if differences in tissue composition, growth, protein structure, and metabolic routing produce tissue-specific offsets that alter inferred carbon sources, d¹⁵N_Baseline, and trophic position. We tested this question with individually paired CSIA-AA of eye lenses, otoliths, and scales …

Metabarcoding-Biomass Relationships And Internal Standards For Quantitative Dna Metabarcoding, Frances Webber

Open Access Master's Theses

DNA metabarcoding has been widely adopted due to its power in investigating the composition of protistan communities, accurately identifying even small and cryptic taxa. However, the compositional nature of DNA metabarcoding results, and the distortion of natural abundances due to variation of the often-used 18S rRNA gene copy number over several orders of magnitude, renders these results semi-quantitative at best, limiting the application of DNA metabarcoding to ecological study. Here, we constructed mock communities from uni-algal cultures of taxonomically diverse phytoplankton and conducted metabarcoding using multiple primer sets and both DNA and cDNA as PCR templates. For each culture, chlorophyll …

A Socio-Ecological Investigation Of Ulithian Spearfishing, Joshua Pi

Open Access Dissertations

Coral reef socio-ecological systems (SESs) characterize the interconnected relationships between coral reef ecosystems and reef-dependent communities. One such SES exists in Ulithi Atoll, Federated States of Micronesia, where Ulithians fish, steward, and govern their reefs through customary marine tenure, traditional ecological knowledge, and cultural taboos. In recent decades, rapid modernization in Ulithi has introduced new fishing technologies, transformed fishing practices, and ultimately reshaped the functioning of Ulithi’s traditional SES. One significant change was the introduction of spearfishing during the mid-20^th century, which is more selective and individualistic compared to other community-centric fishing methods that have existed for generations. This …

Bioaccumulation Of Legacy And Novel Pfas In The Environment, Hesham Taher, Rainer Lohmann

Graduate School of Oceanography Faculty Publications

The bioaccumulation of per- and polyfluoroalkyl substances (PFAS), both legacy and novel, in the environment presents significant ecological and health risks. PFAS are a diverse group of synthetic chemicals known for their persistence and bioaccumulation, which can cause widespread environmental contamination and health risks. Strong carbon-fluorine bonds give these compounds unparalleled stability, preventing them from degrading and enabling them to endure in a range of environmental matrices, including water, soil, and biota. Legacy PFAS, including perfluorooctanoic acid (PFOA) and perfluorooctane sulfonic acid (PFOS), have been extensively studied and regulated, resulting in lower concentrations in some environmental media. However, novel PFAS, …

A Step Toward Reconstructing Climate Variability Druing The Last Ice Age Cycle In The Northeast Pacific Region, Blaine Lynch-Gadaleta

Senior Honors Projects

This study is designed as a step toward reconstructing the climate variability in the Northeast Pacific during the last ice age cycle, including the glacial and deglacial transitions. Reconstruction may also contribute to the regional picture of climate change and potentially provide new insights into the pattern of variability in the Northeast Pacific. Deep-sea sediment core AT26-19 09PC was collected west of the Juan de Fuca Ridge in the Northeast Pacific Ocean. Samples were analyzed in 1 cm intervals, representing approximately 300-year resolution. The abundance of mineral grains, planktonic foraminifera, and the polar foraminifera N.pachyderma was quantified using split aliquots …

Understanding The Public Perception Of Available Scientific Resources In Coastal Southern Maine, James Gallagher

Senior Honors Projects

I have focused my education as an undergrad towards the effective communication of scientific fact to non-scientific groups. This area of study has recently been dubbed Science Communication and it encompasses the effective articulation, communication, and education of scientific topics to people who haven’t dedicated their lives to scientific study. A major component of effective Scientific Communication is understanding your audience and what kind of communication strategies are best for a chosen demographic.

I grew up in Ocean Park Maine, a small town on the coast of Southern Maine which drove my interest in Marine Science. With my experience in …

Global Ocean Change Ocg 511, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Marine Geobiology Ocg 502, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Flow Model Of Offshore Input Of Nitrogen Into The Narragansett Bay, Christopher M. Sireci

Senior Honors Projects

Nitrogen is an important nutrient in ecosystems, as it is used in many biological processes, including the creation of DNA and RNA. However, excess nitrogen in an ecosystem can have adverse effects, such as triggering algal blooms, which limit sunlight penetration to bottom growth, and create anoxic zones. Large scale strategies to remove excess nitrogen from wastewater treatment plants have been utilized, but they are expensive and can potentially remove too much, while increasing greenhouse gas emissions. Thus, it is essential that we understand the accurate full nitrogen budget for an estuary.

Narragansett Bay, an important coastal marine ecosystem that …

Chemical Crises In A Changing Ocean Ocg 104g, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Do Halogenated Natural Products Bioaccumulate In Narragansett Bay?, Christine Gardiner, Anna Robuck, Rainer Lohmann

Senior Honors Projects

In recent decades, a new family of chemical compounds has begun to garner research attention—halogenated natural products, or HNPs. These chemicals are produced by algae, bacteria, worms, and sponges, and many are structurally similar to harmful manmade compounds, such as polychlorinated diphenyls (PCBs), or brominated flame retardants (PBDEs), which are known to cause cancer, reproduction issues, endocrine disruption, and death. While HNPs are produced naturally, they are still considered pollutants because of their bioaccumulative behavior and apparent toxicity.

Currently, there is limited research on their presence and effects, with a few studies from Europe and the Pacific highlighting their importance …

Trophic Ecology Of Oxygen Minimum Zone Zooplankton Revealed By Carbon And Nitrogen Stable Isotopes, Rebecca Williams

Open Access Dissertations

Oxygen minimum zones (OMZs) are areas in which midwater oxygen concentration can be significantly lower than in non OMZ areas at comparable depths. OMZs are of great interest because of the limits oxygen availability places on life. The potential for OMZ expansion with warming of the oceans has refocused attention on the importance of these areas and their potential impacts on the global carbon cycle. The large open ocean OMZs of the Eastern Tropical Pacific and Arabian Sea are notable for their size, thickness, and the intensity of oxygen depletion (

Here, I use measurements of natural abundance carbon and …

Coastal Exploration Of The Southern Black Sea Off Ereğli And Sinop, Turkey, Michael L. Brennan, Dan Davis, Chris Roman, Ilya V. Buynevich, Alexis Catsambis, Meko Kofahl, Maureen Merrigan, Suna Tuzun, Muhammet Duman, Derya Urkmez, J. Ian Vaughn, Tufan Turanli

Graduate School of Oceanography Faculty Publications

No abstract provided.

Continued Exploration Of The Santorini Volcanic Field And Cretan Basin, Aegean Sea, Katherine L. C. Bell, Paraskevi Nomikou, Steven N. Carey, Eleni Stathopoulou, Paraskevi Polymenakou, Athanasios Godelitsas, Chris Roman, Michelle Parks

Graduate School of Oceanography Faculty Publications

No abstract provided.

The Development Of High-Resolution Seafloor Mapping Techniques, Chris Roman, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, Bertrand Douillard, Stefan Williams

Graduate School of Oceanography Faculty Publications

No abstract provided.

Submarine Volcanism In The Straits Of Sicily, Steven N. Carey, Katherine L. C. Bell, Michael Marani, Mauro Rosi, Edward T. Baker, Chris Roman, Marco Pistolesi, Joshua Kelly

Graduate School of Oceanography Faculty Publications

No abstract provided.

Detection Of Diffuse Sea Floor Venting Using Structured Light Imaging, Gabrielle Inglis, Clara Smart, Christopher Roman, Steven Carey

Graduate School of Oceanography Faculty Publications

Efficiently identifying and localizing diffuse sea floor venting at hydrothermal and cold seep sites is often difficult. Actively venting fluids are usually identified by a temperature induced optical shimmering seen during direct visual inspections or in video data collected by vehicles working close to the sea floor. Relying on such direct methods complicates establishing spatial relations between areas within a survey covering a broad area. Our recent work with a structured light laser system has shown that venting can also be detected in the image data in an automated fashion. A structured light laser system consists of a camera and …

Remote Analysis Of Grain Size Characteristic In Submarine Pyroclastic Deposits From Kolumbo Volcano, Greece, Clara Smart, D. P. Whitesell, Christopher N. Roman, Steven Carey

Graduate School of Oceanography Faculty Publications

Grain size characteristics of pyroclastic deposits provide valuable information about source eruption energetics and depositional processes. Maximum size and sorting are often used to discriminate between fallout and sediment gravity flow processes during explosive eruptions. In the submarine environment the collection of such data in thick pyroclastic sequences is extremely challenging and potentially time consuming. A method has been developed to extract grain size information from stereo images collected by a remotely operated vehicle (ROV). In the summer of 2010 the ROV Hercules collected a suite of stereo images from a thick pumice sequence in the caldera walls of Kolumbo …

Concept Tests For A New Wire Flying Vehicle Designed To Achieve High Horizontal Resolution Profiling In Deep Water, Chris Roman, Dave Hebert

Graduate School of Oceanography Faculty Publications

Efficiently profiling the water column to achieve both high vertical and horizontal resolution from a moving vessel in deep water is difficult. Current solutions, such as CTD tow-yos, moving vessel profilers, and undulating tow bodies, are limited by ship speed or water depth. As a consequence, it is difficult to obtain oceanographic sections with sufficient resolution to identify many relevant scales over the deeper sections of the water column. This paper presents a new concept for a profiling vehicle that slides up and down a towed wire in a controlled manner using the lift created by wing foils. The wings …

Investigating The Potential For Nitrate-N Removal In Rhode Island Transient Headwater Streams, Molly Welsh, Kelly Addy, Art Gold, Suzanne Cox

Discovery@URI

Excess nitrogen (N) can have detrimental effects on the environment, particularly in coastal waters where inputs from septic systems and agricultural runoff can lead to algal blooms and hypoxic zones. However, transient headwater streams, which comprise a significant portion of streams in watersheds, may have the potential to remove N given their low flow rates, high surface to volume ratios, long retention times, and hydric soils. We investigated the physical characteristics and N removal capacity of transient headwater streams. Four bromide (Br) and nitrate-N slug tests were conducted in four streams in southern RI. Streams were sampled repeatedly as the …

Development Of High Resolution Sea Floor Mapping Tools And Techniques, Gabrielle Inglis, J. Ian Vaughn, Clara Smart, Christopher N. Roman

Graduate School of Oceanography Faculty Publications

There is a persistent need for high resolution photographic and bathymetric maps of the sea floor for many research areas in marine geology, biology and archaeology. This poster will present recent work using high frequency multibeam sonars, stereo vision and structured light laser imaging techniques to create maps with centimeter resolution for these applications. This research involves the development of new image and sonar processing techniques that combat the typical difficulties of imperfect navigation information, limited sensor ranges and adverse environmental conditions associated with using marine robotic vehicles in the ocean. Data for this work has been collected with the …

Exploration Of The Anaximander Mud Volcanoes, Timothy M. Shank, Santiago Herrera, Walter Cho, Christopher N. Roman, Katherine L. Croff Bell

Graduate School of Oceanography Faculty Publications

No abstract provided.

Landscape Imaging Of The Southeast Aegean Sea, Michael L. Brennan, Tufan Turanli, Bridget Buxton, Katherine L. Croff Bell, Christopher N. Roman, Meko Kofahl, Orkan Koyagasioglu, Daniel Whitesell, Thomas Chamberlain, Richard Sullivan, Robert Ballard

Graduate School of Oceanography Faculty Publications

No abstract provided.

Development Of High-Resolution Underwater Mapping Techniques, Christopher N. Roman, Gabrielle Inglis, J. Ian Vaughn, Stefan Williams, Oscar Pizarro, Ariell Friedman, Daniel Steinberg

Graduate School of Oceanography Faculty Publications

No abstract provided.

Maritime History Of Anzac Cove, Michael L. Brennan, Dwight Coleman, Christopher N. Roman, Tufan Turanli, Dan Davis, Alexis Catsambis, James Moore, Maureen Merrigan, Brennan Bajdek, Daniel Whitesell, Robert Ballard

Graduate School of Oceanography Faculty Publications

No abstract provided.

Exploration Of The Kolumbo Volcanic Rift Zone, Steven Carey, Katherine L. Croff Bell, Paraskevi Nomikou, Georges Vougioukalakis, Christopher N. Roman, Kathleen Cantner, Konstantina Bejelou, Maria Bourbouli, Julie Fero Martin

Graduate School of Oceanography Faculty Publications

No abstract provided.

Autonomous Underwater Vehicles As Tools For Deep-Submergence Archaeology, Christopher N. Roman, Ian Roderick Mather

Graduate School of Oceanography Faculty Publications

Marine archaeology beyond the capabilities of scuba divers is a technologically enabled field. The tool suite includes ship-based systems such as towed side-scan sonars and remotely operated vehicles, and more recently free-swimming autonomous underwater vehicles (AUVs). Each of these platforms has various imaging and mapping capabilities appropriate for specific scales and tasks. Broadly speaking, AUVs are becoming effective tools for locating, identifying, and surveying archaeological sites. This paper discusses the role of AUVs in this suite of tools, outlines some specific design criteria necessary to maximize their utility in the field, and presents directions for future developments. Results are presented …

Application Of Structured Light Imaging For High Resolution Mapping Of Underwater Archaeological Sites, Chris Roman, Gabrielle Inglis, James Rutter

Graduate School of Oceanography Faculty Publications

This paper presents results from recent work using structured light laser profile imaging to create high resolution bathymetric maps of underwater archaeological sites. Documenting the texture and structure of submerged sites is a difficult task and many applicable acoustic and photographic mapping techniques have recently emerged. This effort was completed to evaluate laser profile imaging in comparison to stereo imaging and high frequency multibeam mapping. A ROV mounted camera and inclined 532 nm sheet laser were used to create profiles of the bottom that were then merged into maps using platform navigation data. These initial results show very promising resolution …

Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant

Fisheries, Animal and Veterinary Sciences Faculty Publications

The elemental composition of otoliths may provide valuable information for establishing connectivity between fish nursery grounds and adult fish populations. Concentrations of Rb, Mg, Ca, Mn, Sr, Na, K, Sr, Pb, and Ba were determined by using solution-based inductively coupled plasma mass spectrometry in otoliths of young-of-the year tautog (Tautoga onitis) captured in nursery areas along the Rhode Island coast during two consecutive years. Stable oxygen (δ¹⁸O) and carbon (δ¹³C) isotopic ratios in young-of-the year otoliths were also analyzed with isotope ratio mass spectrometry. Chemical signatures differed significantly among the distinct nurseries within Narragansett …