Biomedical Engineering and Bioengineering Commons^™

An Experimental Study Of The Morphology Of Dna-Carbon Nanotube Hybrid Structures In Direct Dna Sequencing, Avery P. Davis

Biomedical Engineering Undergraduate Honors Theses

Hybrid structures formed between single-stranded DNA (ssDNA) and single-walled carbon nanotubes (SWCNT) have emerged as promising components in future direct DNA sequencing technologies due to their unique morphological and electronic properties. The nanoscale configuration of these hybrids, including the DNA wrapping angle, pitch, and contour behavior, directly influences their potential for stable electronic readout. This thesis presents an experimental study of DNA-SWCNT hybrid morphology using a fixed, reproducible wrapping protocol designed to minimize environmental variability and isolate the influence of DNA nucleotide sequence on hybrid structure. As described in prior work, this protocol produces well-dispersed hybrids suitable for high-resolution imaging. …

Investigation Into The Effects Of Moderate-Dose Radiation On Ligament Biomechanics, Andrew Landefeld

All Theses

Recent advances in arthritis treatment pin ionizing X-ray radiation as a useful tool in reducing joint pain and immune response. However, due to a lack of fundamental research in the effects of low-dose ionizing radiation on tendon and ligament biomechanics, the safety of these studies is rather unknown. While most related studies investigated cellular response to low dose treatment, surrounding tissue physiology is left out of the picture. Additionally, moderate range doses of irradiation are rarely studied, as most uses of radiation on tendons and ligaments are for sterilization of cadaver tendons for allografts. This study provides a preliminary investigation …

The Impact Of Dipeptides On Product Quality In Chinese Hamster Ovary Cells, Louise C. Herman

All Theses

Biopharmaceuticals are medicines produced in cells which are used to treat diseases such as cancer. Monoclonal antibodies (mAbs) represent the majority of approved biotherapeutics. MAbs are mostly produce using Chinese hamster ovary (CHO) cells. CHO cells are favored for resiliency, scalability, and established safety, and are considered the “workhorse” organism for biopharmaceuticals.  Amino acids are a key component of cell culture media, however several amino acids have solubility limits, such as cysteine, cystine, and tyrosine.  At neutral pH, these amino acids are poorly soluble.  However, dipeptides, such as N,N'-di-L-Alanyl-L-Cystine (ACCA) have been reported to increase cysteine and cystine availability. Further, …

Exercise-Induced Muscle Damage As A Model For Exploring The Effects Of Pain On Gait, Sydney Savage

All Theses

Persistent gait asymmetry following anterior cruciate ligament reconstruction (ACLR) is a recognized contributor to post-traumatic knee osteoarthritis, yet the independent role of pain in driving altered movement patterns remains poorly understood due to confounding factors inherent to clinical populations. This study used exercise-induced muscle damage (EIMD) as a controlled experimental model to isolate the effects of musculoskeletal pain on gait, independent of kinesiophobia, structural damage, and proprioceptive disruption. Eighteen healthy adults underwent unilateral eccentric calf-raise protocols to induce delayed onset muscle soreness (DOMS), with gait assessed at baseline, 48 hours, and 168 hours post-exercise using bilateral inertial measurement units. Outcomes …

Design And Development Of A Perfusable Hydrogel Platform With Bioprinted Human-Endothelialized Microvascular Channels, Calvin A. Chernyatinskiy

All Theses

We developed an integrated bioprinting and perfusion platform to generate vascularized hydrogel constructs that support perfusable microchannel networks. Multiple hydrogel formulations, sacrificial ink systems, device geometries, and perfusion conditions were systematically evaluated to optimize print fidelity, mechanical stability, and cellular compatibility. Internally gelling alginate–calcium carbonate hydrogels were identified as a robust matrix, providing tunable gelation kinetics and structural stability during embedded printing. In parallel, Pluronic F-127 fugitive ink enabled reliable fabrication of continuous hollow channels due to its shear-thinning behavior and efficient post-print removal.

The finalized platform integrates stereolithographically fabricated perfusion chambers with extrusion-based bioprinting to produce three-dimensional, perfusable vascular …

Baseline Cervical Intervertebral Disc Biomechanics And Implications For Allograft Preservation, Nathan F. Buchweitz

All Dissertations

Neck pain has become an increasingly common orthopaedic healthcare issue. Evidence shows that degeneration of cervical intervertebral discs (the cartilage between the spinal vertebrae in the neck) may be associated. While disc degeneration in the lumbar spine has been extensively studied in relation to low back pain, it has received less attention in the cervical spine. Biomechanically, the cervical (neck) and lumbar (lower back) regions of the spine differ in function. Lumbar discs resist a greater burden of body weight, whereas cervical discs are adapted for mobility to aid flexible head orientation. Despite these key differences, disc injury and degeneration …

Retrospective Analysis Of Implemented Project Management Within A Small-Scale Student Engineering Project: Beng Fountain Wars Team Case Study, Holli E. Jenkins

Biological and Agricultural Engineering Undergraduate Honors Theses

This honors thesis provides a retrospective analysis of how the 2025 inaugural University of Arkansas’s ASABE Fountain Wars Student Team could be improved through project management. Project commitment, early stakeholder influence, rich communication, and a detailed project plan are all attributes of successful projects, and the team’s strengths and weaknesses within these categories were determined through a team poll. After the poll was conducted, three methodologies, Agile, Hybrid, and Waterfall, were assessed to determine how they would effectively address the team’s weaknesses. A weighted objectives table was created to compare each methodology’s effectiveness across the management categories. The analysis revealed …

Ihelp Foundation 2025 Uganda Medical Mission, Kade Spencer Robison

Undergraduate Honors Capstone Projects

Uganda faces significant barriers to health care access, particularly in rural communities, due to physician shortages and limited resources. As a result, care is concentrated in urban areas, leaving rural populations disproportionately affected by both communicable and noncommunicable diseases.

This Honors Capstone project focused on preparing for and supporting the iHelp Foundation’s 2025 Uganda Medical Mission. The iHelp Foundation works to reduce barriers to care in Uganda by partnering with local hospitals to provide short-term rural clinics and specialized surgical care for advanced otolaryngological conditions.

In this project, I contributed to mission preparation by training volunteers and coordinating physician licensing. …

A Webcam Eye Tracking Infrastructure For Software Engineering Tasks, Zachary M. Kozak

School of Computing: Dissertations, Theses, and Student Research

Performing eye tracking utilizing commodity webcams has been explored for over a decade, but limited camera quality and sensitivity to head movements have hindered its adoption in research settings. Recent advances in consumer-grade webcams and machine learning methods present an opportunity to improve the accuracy of webcam eye tracking and extend the feasibility of studies beyond controlled laboratory environments.

Current popular webcam eye tracking methods restrict implementations to the browser and rely on continuous user interactions for calibration, limiting the kinds of studies that can be conducted. This thesis presents a feature-based gaze prediction system that incorporates eye geometry and …

Multiscale Architecture Governs Stability In Suction-Actuated Variable Stiffness Catheters, Sheridan Lee

McKelvey School of Engineering Graduate Student Theses & Dissertations

Endovascular procedures require devices with widely varying mechanical properties: flexibility for navigating tortuous vessels and rigidity for stable therapeutic delivery. Suction-actuated variable stiffness sheaths address this challenge by incorporating axial wire string arrays that mechanically couple under suction to increase flexural rigidity. However, prototype devices achieve stiffening ratios below theoretical predictions, suggesting that interlayer mechanics and string positioning play a critical role. This study investigates whether interweaving polytetrafluoroethylene (PTFE) tape within the string array enhances flexural rigidity modulation and curvature stability. Prototype devices with varying wrap configurations were fabricated and evaluated using flexural testing, curvature stability testing, and mathematical modeling. …

Quantitative Fluorescence Imaging Using A Paired Agent Approach For Improving Surgical Decision Making, Sanjana Pannem

Dartmouth College Ph.D Dissertations

Surgical resection remains to be the cornerstone of treatment for most solid tumors, where the primary objective is to remove all visible and microscopic disease. However, the extent of tumor resection is inherently limited by the surgeon’s ability to distinguish tumor from normal tissue, intraoperatively. As a result, positive surgical margins (PSM), where residual tumor remains after surgery, are a common occurrence and are associated with increased recurrence, need for adjuvant therapies, dismal patient outcomes, and high healthcare costs.

Fluorescence guided surgery (FGS) has emerged as a promising technique to enhance intraoperative visualization of tumors and may help reduce the …

Picc-Pal: A Support Band For Independent Picc Line Use, Kylie Luker

Honors Theses

This project presents the design and evaluation of PICC-PAL, a wearable assistive device intended to improve independence and usability for patients managing peripherally inserted central catheters (PICC lines) at home. Current at-home PICC line management often requires help due to the fine motor skills needed to connect and secure tubing. This increases reliance on caregivers and introduces potential risks such as infection and dislodgement. Through stakeholder analysis, prior art evaluation, and iterative prototyping, a device was developed to stabilize the PICC line lumen and enable one-handed connection of medical tubing. Throughout the project, multiple design concepts were explored, with the …

An Evaluation Of Total Navicular Implants: A Scoping Review, James Mcclure Hughes, Nicholas Belardo Obias, Amanda Killeen

School of Podiatric Medicine - Student Research

The aim of this study is to determine the efficacy and safety profile of total navicular implants based on current literature.

Navicular insults such as high-energy trauma, osteonecrosis, and Muller-Weiss syndrome may result in avascular necrosis or a critical sized bone defect, conditions that are highly difficult to manage given current treatment modalities. Total navicular implants may offer a solution to these problems. While 3D printing of implants remains investigational, its use in highly individualized cases involving the talus has had promising results with conditions like avascular necrosis, tumors, trauma, and arthritis. The navicular is unique in its attachments to …

Plant Growth Promoting Phenotypes Of Fungal Isolates From The International Space Station, Shane Doyle, Frances A. Edmonson

Ocean Engineering and Marine Sciences Student Publications

• In situ (on site) space crop production is vital for sustainability and dietary health of astronauts. 
• We hypothesize that International Space Station (ISS) derived fungal isolates will stimulate plant growth and express PGP phenotypes.
• Eleven space-viable fungi were screened via phenotypic testing to identify plant growthpromoting (PGP) activity.
• Prior research has been conducted solely with ISS derived bacteria, while ISS fungi are unexplored, which could reveal new or improved symbiotic relationships and growth factors.

C-Side: Concussion Sideline Injury Detection And Evaluation, Emily Acampora, Emma Angelo, Kyle Burden

Biomedical Engineering and Sciences Student Publications

Concussion are a form of mild traumatic brain injury (mTBI), affecting an estimated 3.8 million Americans anually. Athletes are particularly susceptible to incurring concussions. Current diagnostic methods are timeconsuming and rely primarily on subjective measures.

Biostress: An Engineered Platform For Detecting Cellular Damage Upon Mechanical Impact, Lindsay Avila, Nina Fiordaliso, Mai Tran

Biomedical Engineering and Sciences Student Publications

Mechanical impact stimuli are commonly associated with cellular damage and lower cell survival rates. However, mild impacts can promote responses that are adaptive. The heat shock protein 70 (HSP70) is a stressinducible protein that serves as an early biomarker for cellular stress. The relationship between impact severity and cellular response remains unclear.

Cardio Clarity -Wearable Cardiac Monitoring, Kaitlyn Dunn, Matthew Kotze, Emily Matheson, Caroline Moore

Biomedical Engineering and Sciences Student Publications

Purpose: Develop a low-cost wearable system for an accessible cardiac monitoring platform

Clear Aligner Overcorrection To Reduce Incisor Tipping | In Vitro, Benjamin Losch, Eddie Wawrzycki-Stein, Kylie Stong, Niko Burger

Biomedical Engineering and Sciences Student Publications

Quantify the biomechanical effects of overcorrection angles on tipping angle and periodontal moment during incisior retractions using both in vitro experiments and finite element analysis (FEA).

Biopulse: Split Hopkinson (Kolsky) Bar, Andrew Carr, Sebastian Deniz, Rachel Hizon, Stefan Paton

Biomedical Engineering and Sciences Student Publications

A Split Hopkinson (Kolsky) Bar is a device used to find a material’s mechanical response under high strain rate loading scenarios (10² – 10⁴ s⁻¹) [1]. It is commonly used to simulate vehicle crashes or ballistic impacts. The novelty of the device is its size and cost of its components compared to other SPHBs on the market. The motivation is to further the capabilities on campus by providing the first dynamic material testing device.

Vitasense: Noninvasive Physiological Signal Measurement From Video Data, Ava Dorow, Justin Mcparland, Ashley Schindler

Biomedical Engineering and Sciences Student Publications

• Heart rate monitoring enables proactive patient care
• Imaging Photoplethysmography (iPPG) enables noncontact measurement 
• Improves access to remote and virtual care