Biogeochemistry Commons^™

Elucidating Non-Canonical Interactions Of Mcl1 With The P53 Family Of Tumor Suppressors, Alexus Marie Acton

All ETDs from UAB

Various signaling mechanisms contribute to a cancers cell’s ability to survive through the stressors of tumorigenesis. Canonically, when a cell is exposed to irreversible stress, the induction to apoptosis is regulated by the Bcl-2 family of apoptotic regulators. However, to accommodate for the stressors of tumor progression, many solid tumors over express one of the pro-survival proteins (e.g., BCL2, BCLxL, MCL1) allowing for persistent growth without the induction to cell death. Over the past 10 years, researchers have investigated how over expression of these pro-survival proteins contribute to chemoresistance to standard of care therapies. To sensitize cells to these apoptotic …

Investigating The Thermal Stratification Patterns Of A Shallow Polymictic Boreal Shield Lake And The Effectiveness Of Models In Predicting Shallow Lake Thermal Profiles, Matthew Roberts

Theses and Dissertations (Comprehensive)

Thermal stratification is a core process of lakes which plays a critical role in shaping the ecological dynamics of lakes, influencing major processes like nutrient cycling and oxygen availability. For shallow polymictic lakes, thermal stratification patterns present some unique differences due to the complex and variable nature of these lakes. In this thesis, I examined thermal stratification in a shallow polymictic lake in northwestern Ontario during the ice-free season of 2019 to investigate the frequency, duration, and driving factors of thermal stratification. The lake underwent 146 separate stratification events, with a median duration of 2 hours per event, with a …

A Collaborative Assessment Of Coastal Ocean Acidification Monitoring In Maine & Standard Operating Procedures And Best Practices For The Collection Of Continuous Ph Data In Coastal Marine Environments, Christopher W. Hunt, Curtis Bohlen, Mike Doan, Jeremy Miller

Faculty Publications

The ‘Sensor Squad’ of the Maine Ocean Climate Collaborative is the product of a 2023 Maine Coastal and Marine Climate Action Fund grant to conduct “A two-year pilot project designed to address and overcome technological barriers to ocean acidification data collection, develop protocols to elevate quality assurance and ensure comparable data, and meet regularly to discuss project results and data compilation”. The Squad consists of representatives from Friends of Casco Bay (FOCB), Wells National Estuarine Research Reserve (WNERR), and the University of New Hampshire (UNH). This report is a summary of their efforts to assess affordable, repeatable means of continuously …

Microbial Diversity And Biogeochemical Interactions In The Seismically Active And Co2-Rich Eger Rift Ecosystem, Daniel Lipus, Zeyu Jia, Megan Sondermann, Robert Bussert, Alexander Bartholomäus, Sizhong Yang, Dirk Wagner, Jens Kallmeyer

College of Life Sciences Faculty Papers

The Eger Rift subsurface is characterized by frequent seismic activity and consistently high CO2 concentrations, making it a unique deep biosphere ecosystem and a suitable site to study the interactions between volcanism, tectonics, and microbiological activity. Pulses of geogenic H2 during earthquakes may provide substrates for methanogenic and chemolithoautotrophic processes, but very little is currently known about the role of subsurface microorganisms and their cellular processes in this type of environment. To assess the impact of geologic activity on microbial life, we analyzed the geological, geochemical, and microbiological composition of rock and sediment samples from a 238 m deep drill …

Organic Alkalinity Distributions, Characteristics, And Application To Carbonate System Calculations In Estuarine And Coastal Systems, Christopher W. Hunt, Joseph Salisbury, Xuewu Liu, Robert H. Byrne

Faculty Publications

The capacity of aquatic systems to buffer acidification depends on the sum contributions of various chemical species to total alkalinity (TA). Major TA contributors are inorganic, with carbonate and bicarbonate considered the most important. However, growing evidence shows that many rivers, estuaries, and coastal waters contain dissolved organic molecules with charge sites that create organic alkalinity (OrgAlk). This study describes the first comparison of (1) OrgAlk distributions and (2) acid–base properties in contrasting estuary-plume systems: the Pleasant (Maine, USA) and the St. John (New Brunswick, CA). The substantial concentrations of OrgAlk in each estuary were sometimes not conservative with salinity …

Algal Community Investigations: Present Day To Year-2100 For Mississippi Lakes And The Western Mississippi Sound, Emma Madison Tucker

Theses and Dissertations

Algae play a key role in the aquatic environment as primary producers; however, they can form harmful algal blooms that are detrimental to the aquatic environment, people, and even the economy. It is generally believed that climate change will influence future algal blooms. The first study estimated algae community in three freshwater locations in Mississippi, Desoto Lake, White’s Creek Lake, and Columbus Lake, and one saline location, Western Mississippi Sound, using modern and new tools of the autonomous surface vessel, FlowCam, and EcoTaxa. From those results and leading into the second study was the application of four climate scenarios on …

The Ecology Of Chemosynthesis In Submerged Coastal Caves, Robert Scharping, Michael Casso, Isabel Schaal, Paul Henderson, James Garey, Matthew Charette, John Pohlman, Stefan Sievert

FRONTIERS UNBOUND: Exploring Extreme Environments

No abstract provided.

Time-Transgressive Microbial Diversity In A Tropical Bat Guano Accumulation, Deer Cave, Mulu, Borneo, Joyce Lundberg, Donald A. Mcfarlane

International Journal of Speleology

Bat guano accumulations in caves can constitute large deposits of organic material, particularly chitin and its degradation products, that host a diverse microbiome. Previous microbiological studies have not addressed the stratified nature of these deposits in the context of the timeframe of the decomposition process. We present such data (temperature, pH, DNA sampling of eight carbon-dated strata) for a 75 cm-deep tropical guano accumulation that undergoes complete decomposition over a timescale of ~120 years. The aerobic, surface layer of freshly-fallen guano has the greatest diversity of taxa, with Bacteroidota co-dominant with Pseudomonadota, and includes many taxa unique to this …

Tales In The Teeth: Using Isotopic Analysis To Understand The Paleoecology And Social Behavior Of Brontotheres Of The Intermountain Basins During The Middle Eocene, John Michael Michalski

All Graduate Reports and Creative Projects, Fall 2023 to Present

Isotopic analysis has been a common practice used in paleontology to study ancient ecosystems, and the lives of animals therein. Oxygen isotopic analysis is of particular importance not only because of its use in studying paleoecology, diet, and migration, but also its use in studying mountain elevation, and its impact on ancient ecosystems. I use stable oxygen isotopic analysis to study the habits and ecology of brontotheres from intermountain basins surrounding the Uinta Mountains of Utah and Wyoming, USA. I studied the oxygen isotopes from 16 fossil specimens of teeth, most of which belonged to brontotheres, including the genera Palaeosyops …

Remediating History: A Review Of Restoration For Creeks Polluted From Historical Mining Sites, With The Red Boy Mine As A Primary Case Study, Kara Atiyeh

University Honors Theses

I conducted a literature review to examine the key aspects of restoring watersheds affected by pollution from historical mining. This review is then applied to a case study discussion of the Red Boy Mine and Clear Creek remediation project in Granite, Oregon. The goal of this discussion is to explore how an analysis of site conditions along with current literature on management practices can help guide these projects. Thousands of abandoned hard rock mines remain throughout the country, and many pose serious environmental health effects. Heavy metals like cadmium, nickel, and copper are brought to the surface from mining activity, …

Effects Of Urbanization On Eutrophication Parameters In Three Tidal Creeks, Ella Swantek

Honors Theses

Marshes and swashes are vital environments as a controlling barrier between land affected by various pollutants and the ocean. Eutrophication and the effects of this process can be detrimental for the areas experiencing it. I am interested in ways areas that have little contact with human interactions compare to areas that are heavily urbanized, and whether either of these locations is at a higher risk for eutrophication. Using spectrophotometry and fluorometry, I analyzed samples collected from the relatively undeveloped and restricted-access locations of Waities Island Beach and Dunn Sound monthly for dissolved nutrients, and chlorophyll. At the time of sampling, …

Impacts Of Hurricane Idalia’S Surge On Coastal Sand Biogeochemistry, Wendy "Cor" Mchone

Honors Theses

Beaches are heavily influenced by extreme events, such as hurricanes. Biological and chemical processes, such as primary production and diagenesis are often interrupted by these events. To examine the effects of hurricanes on coastal biogeochemistry, this study used sand and porewater samples from Waties Island, SC, which were collected before and after Hurricane Idalia. The samples were analyzed for macronutrient concentrations, organic content, and chlorophyll concentrations. Macronutrient pore water concentration changes were not uniform. The inventory of nitrite decreased significantly after the storm, which was reflected in slight increases in the inventories of nitrate and ammonium. Concentrations of nitrate, which …

Sedimentary Conditions At A Tidal Creek That Exhibits Seasonal Pelagic-Benthic Variations, Jack B. Corbin

Honors Theses

Tidal creeks in the Grand Strand of South Carolina are small but numerous connectors between land and ocean. One of these creeks, White Point Swash, exhibits a seasonal switch between planktonic and benthic photosynthesizers. As plankton become less abundant in fall, benthic macroalgae bloom, aided by lower water levels due to fall-winter dredging of the main channel, until late Spring. This study builds on previous findings and examines sedimentary conditions at this site further. Sedimentary chlorophyll a (in microphytobenthos) and pore water nutrient concentrations are confirmed to be higher than water-column concentrations. Sedimentary nutrient fluxes to the sediment-water interface, calculated …

A Global Analysis Of Carbon And Nitrogen Stocks In Natural And Anthropogenic Soils, Shih-Chieh Chien

Theses, Dissertations and Culminating Projects

In terrestrial biomes, soils possess the highest amount of carbon and nitrogen stocks that regulate biogeochemical processes and provide ecosystem services. The amount of carbon and nitrogen stored in soils, as a balance of nutrient influxes and outfluxes, is controlled by various environmental and soil factors, while at the same time soil carbon and nitrogen stocks can be subject to anthropogenic impacts, like nutrient storage in urban soils. To inform a better, general understanding of carbon and nitrogen distribution in urban soils, the present dissertation gathers four articles (from Chapters 2 to 5, respectively) addressing different aspects of the issue, …

Coastal-Ocean And Estuarine Acidification In Long Bay, South Carolina: A Comparison Of In-Situ Water Quality Monitoring With Measured Carbonate System Parameters, Mary Olsen

Electronic Theses and Dissertations

One of the major water-quality issues impacting our coast and estuaries is coastal-ocean and estuarine acidification. Due to a relative dearth of data in the southeastern United States it is increasingly difficult to determine the full extent and intensity of this problem. This study provides the first characterization of coastal-ocean and estuarine acidification in Long Bay, SC by attempting to leverage long-term water quality data sets at two coastal-ocean pier sites using in-situ YSI EXO sondes deployed at both the surface and bottom waters along with two estuarine sites sampled by volunteer monitors using Orion star multi-meters. Discrete samples (120) …

Terrestrial Exchange Of Atmospheric Metals: Insights From Fallout Radionuclides, Joshua D. Landis

Dartmouth College Ph.D Dissertations

Forests mediate the exchange of gases and particulate matter (PM2.5 and PM10) between terrestrial ecosystems and the atmosphere over 30% of global land area. Because forest foliage efficiently absorbs PM with persistent pollutants including metals Pb and Hg, as well as CO₂ and gaseous elemental mercury (GEM), this exchange profoundly influences the composition of the atmosphere as well as terrestrial biogeochemical cycles. The processes by which PM is absorbed remain enigmatic, however, due to the complexity of micrometeorological physics and submicron physical scale of the interaction. Here, measurements of fallout radionuclides (FRNs) beryllium-7 and lead-210, which are quintessential tracers …

Development Of Novel Analytical Methods For The Investigation Of Mammalian Tissues And Cells, Grace A. Binder

USF Tampa Graduate Theses and Dissertations

This dissertation endeavors to advance the frontiers of analytical chemistry by addressing critical challenges across three distinct chapters. In the first chapter, the focus is on the evaluation of digestion methods for the analysis of trace metals in mammalian tissues and the Standard Reference Material NIST 1577c. The primary goal is to optimize methodologies, laying the groundwork for reliable trace metal analysis and furthering our understanding of their roles in biological systems.

Transitioning into the realm of immunomodulation, the second chapter elucidates immune response, disease and treatment through the optimization and discovery of STING modulators, utilizing the luciferase assay for …

Transport Of Multi-Phase Multi-Component Fluids In The Shallow Subsurface Influenced By Soil And Surface Boundary Conditions: Experimental And Numerical Study With Application To Natural Gas Leakage, Navodi Jayarathne

Civil and Environmental Engineering Theses and Dissertations

With the increased use of Natural Gas (NG) as a source of fuel, underground leak-related events are increasingly reported, and some are fatal. Subsurface migration and development up to flammable limits are highly dependent on leak characteristics, soil, atmospheric variables, and other surface and subsurface structural complexities. Although few studies have characterized the transient behavior of leaked NG in the shallow subsurface, the underlying mechanisms and their interactions are not well understood, which prevents prediction of the impact of environmental and operating conditions on gas migration. The study conducted a series of field scale-controlled release experiments and numerical simulations to …

Impact Of Climate Change On Carbon And Nitrogen Balance In Zostera Marina L. (Eelgrass), Malee Jinuntuya

OES Theses and Dissertations

Seagrasses face vulnerability to both global stressors like Ocean Acidification (OA) and climate warming compounded by local stressors such as eutrophication that reduces light availability, leading to a complex dynamic of positive and negative effect on their growth and survival. Increased dissolved aqueous CO₂ (CO_2(aq)) benefits seagrasses by enhancing photosynthetic and growth rates, but it may increase nutrient demand, potentially depleting nutrient supply, especially in oligotrophic environments.

In this study, the long-term impact of CO₂ on Zostera marina L. (eelgrass) were investigated across a gradient of CO_2(aq) concentrations (55 – 2200 µM CO_{2(aq)) …}

The Impacts Of Nature-Based Sediment Restoration Practices On Coastal Wetland Soil Biogeochemistry, Jacob Z. Cheng

LSU Master's Theses

Coastal marshes provide many valuable ecosystem services. However, these wetlands are threatened worldwide, being subject to sea level rise, sediment starvation, subsidence, coastal edge erosion, etc. Many efforts are being made to counteract this wetland loss and preserve the ecosystem services. Two such methods are sediment diversion and the thin layer placement (TLP) of dredged sediment.

Sediment diversion involves reconnecting the main channel of a river body to disconnected wetlands, supplying much needed soil-building materials. However, this method affects the salinity of the waters, introducing large amounts of freshwater into the system. Salinity changes can affect marsh biogeochemistry. Most ecological …