Oceanography Commons^™

A Recirculating Eddy Promotes Subsurface Particle Retention In An Antarctic Biological Hotspot, Katherine L. Hudson, Matthew John Oliver, Josh Kohut, Michael S. Dinniman, J. M. Klinck, Carlos Moffat, Hank Statscewich, Kim S. Bernard, William Fraser

OES Faculty Publications

Palmer Deep Canyon is one of the biological hotspots associated with deep bathymetric features along the Western Antarctic Peninsula. The upwelling of nutrient-rich Upper Circumpolar Deep Water to the surface mixed layer in the submarine canyon has been hypothesized to drive increased phytoplankton biomass productivity, attracting krill, penguins and other top predators to the region. However, observations in Palmer Deep Canyon lack a clear in-situ upwelling signal, lack a physiological response by phytoplankton to Upper Circumpolar Deep Water in laboratory experiments, and surface residence times that are too short for phytoplankton populations to reasonably respond to any locally upwelled nutrients. …

Taxonomic And Nutrient Controls On Phytoplankton Iron Quotas In The Ocean, Benjamin S. Twining, Olga Antipova, P. Dreux Chappell, Natalie R. Cohen, Jeremy E. Jacquot, Elizabeth L. Mann, Adrian Marchetti, Daniel C. Ohnemus, Sara Rauschenberg, Alessandro Tagliabue

OES Faculty Publications

Phytoplankton iron contents (i.e., quotas) directly link biogeochemical cycles of iron and carbon and drive patterns of nutrient limitation, recycling, and export. Ocean biogeochemical models typically assume that iron quotas are either static or controlled by dissolved iron availability. We measured iron quotas in phytoplankton communities across nutrient gradients in the Pacific Ocean and found that quotas diverged significantly in taxon‐specific ways from laboratory‐derived predictions. Iron quotas varied 40‐fold across nutrient gradients, and nitrogen‐limitation allowed diatoms to accumulate fivefold more iron than co‐occurring flagellates even under low iron availability. Modeling indicates such “luxury” uptake is common in large regions of …

Salt Marsh Hydrogeology: A Review, Julia Guimond, Joseph Tamborski

OES Faculty Publications

Groundwater–surface water exchange in salt marsh ecosystems mediates nearshore salt, nutrient, and carbon budgets with implications for biological productivity and global climate. Despite their importance, a synthesis of salt marsh groundwater studies is lacking. In this review, we summarize drivers mediating salt marsh hydrogeology, review field and modeling techniques, and discuss patterns of exchange. New data from a Delaware seepage meter study are reported which highlight small-scale spatial variability in exchange rates. A synthesis of the salt marsh hydrogeology literature reveals a positive relationship between tidal range and submarine groundwater discharge but not porewater exchange, highlighting the multidimensional drivers of …

A Coastal N₂ Fixation Hotspot At The Cape Hatteras Front: Elucidating Spatial Heterogeneity In Diazotroph Activity Via Supervised Machine Learning, Corday R. Selden, P. Dreux Chappell, Sophie Clayton, Alfonso Macías-Tapia, Peter W. Bernhardt, Margaret R. Mulholland

OES Faculty Publications

In the North Atlantic Ocean, dinitrogen (N₂) fixation on the western continental shelf represents a significant fraction of basin‐wide nitrogen (N) inputs. However, the factors regulating coastal N₂ fixation remain poorly understood, in part due to sharp physico‐chemical gradients and dynamic water mass interactions that are difficult to constrain via traditional oceanographic approaches. This study sought to characterize the spatial heterogeneity of N₂ fixation on the western North Atlantic shelf, at the confluence of Mid‐ and South Atlantic Bight shelf waters and the Gulf Stream, in August 2016. Rates were quantified using the ¹⁵N_{2 …}

Adenosine Triphosphate (Atp) As A Metric Of Microbial Biomass In Aquatic Systems: New Simplified Protocols, Laboratory Validation, And A Reflection On Data From The Literature, Alexander B. Bochdansky, Alison N. Stouffer, Nyjaee N. Washington

OES Faculty Publications

The use of adenosine triphosphate (ATP) as a universal biomass indicator is built on the premise that ATP concentration tracks biomass rather than the physiological condition of cells. However, reportedly high variability in ATP in response to environmental conditions is the main reason the method has not found widespread application. To test possible sources of this variability, we used the diatom Thalassiosira weissflogii as a model and manipulated its growth rate through nutrient limitation and through exposure to three different temperatures (15°C, 20°C, and 25°C). We simplified the ATP protocol with hot‐water or chemical extraction methods, modified a commercially available …

Using Heat To Trace Vertical Water Fluxes In Sediment Experiencing Concurrent Tidal Pumping And Groundwater Discharge, N. K. Leroux, B. L. Kurylyk, M. A. Briggs, D. J. Irvine, J. J. Tamborski, V. F. Bense

OES Faculty Publications

Heat has been widely applied to trace groundwater-surface water exchanges in inland environments, but it is infrequently applied in coastal sediment where head oscillations induce periodicity in water flux magnitude/direction and heat advection. This complicates interpretation of temperatures to estimate water fluxes. We investigate the convolution of thermal and hydraulic signals to assess the viability of using heat as a tracer in environments with tidal head oscillations superimposed on submarine groundwater discharge. We first generate sediment temperature and head time series for conditions ranging from no tide to mega-tidal using a numerical model (SUTRA) forced with periodic temperature and tidal …

Assessment Of Tidal Range Changes In The North Sea From 1958 To 2014, Leon Jänicke, Andra Ebener, Sönke Dangendorf, Arne Arns, Michael Schindelegger, Sebastian Niehüser, Ivan D. Haigh, Philip Woodworth, Jürgen Jensen

CCPO Publications

We document an exceptional large-spatial scale case of changes in tidal range in the North Sea, featuring pronounced trends between -2.3 mm/yr at tide gauges in the United Kingdom and up to 7 mm/yr in the German Bight between 1958 and 2014. These changes are spatially heterogeneous and driven by a superposition of local and large-scale processes within the basin. We use principal component analysis to separate large-scale signals appearing coherently over multiple stations from rather localized changes. We identify two leading principal components (PCs) that explain about 69% of tidal range changes in the entire North Sea including the …

Dynamical Downscaling Projections Of Late 21st Century U.S. Landfalling Hurricane Activity, Thomas R. Knutson, Joseph J. Sirutis, Morris A. Bender, Robert E. Tuleya

CCPO Publications

U.S. landfalling tropical cyclone (TC) activity was projected for late 21st century conditions using a two-step dynamical downscaling framework. A regional atmospheric model, run for 27 seasons, generated tropical storm cases. Each storm case was re-simulated (up to 15 days) using the higher resolution GFDL hurricane model. Thirteen CMIP3 or CMIP5 modeled climate change projections were explored as scenarios. Robustness of projections was assessed using statistical significance tests and comparing the sign of changes derived from different models. The proportion of TCs (tropical storms and hurricanes) making U.S. landfall increases for the warming scenarios (by order 50% or more). For …

Factors Determining Seagrass Blue Carbon Across Bioregions And Geomorphologies, Ines Mazarrasa, Paul Lavery, Carlos M. Duarte, Anna Lafratta, Catherine E. Lovelock, Peter I. Macreadie, Jimena Samper-Villarreal, Cristian Salinas, Christian J. Sanders, Stacey Trevathan-Tackett, Mary Young, Andy Steven, Oscar Serrano

Research outputs 2014 to 2021

Seagrass meadows rank among the most significant organic carbon (C_org) sinks on earth. We examined the variability in seagrass soil C_org stocks and composition across Australia and identified the main drivers of variability, applying a spatially hierarchical approach that incorporates bioregions and geomorphic settings. Top 30 cm soil C_org stocks were similar across bioregions and geomorphic settings (min-max: 20–26 Mg C_org ha⁻¹), but meadows formed by large species (i.e., Amphibolis spp. and Posidonia spp.) showed higher stocks (24–29 Mg C_org ha⁻¹) than those formed by smaller species (e.g., Halodule, Halophila, …

Riverine Carbon Cycling Over The Past Century In The Mid‐Atlantic Region Of The United States, Yuanzi Yao, Hanqin Tian, Shufen Pan, Raymond G. Najjar, Marjorie A.M. Friedrichs, Zihao Bian, Hong-Yi Li, Eileen E. Hofmann

CCPO Publications

The lateral transport and degassing of carbon in riverine ecosystems is difficult to quantify on large spatial and long temporal scales due to the relatively poor representation of carbon processes in many models. Here, we coupled a scale‐adaptive hydrological model with the Dynamic Land Ecosystem Model to simulate key riverine carbon processes across the Chesapeake and Delaware Bay Watersheds from 1900 to 2015. Our results suggest that throughout this time period riverine CO₂ degassing and lateral dissolved inorganic carbon fluxes to the coastal ocean contribute nearly equally to the total riverine carbon outputs (mean ± standard deviation: 886 ± …

Impacts Of Multiple Environmental Changes On Long‐Term Nitrogen Loading From The Chesapeake Bay Watershed, Shufen Pan, Zihao Bian, Hanqin Tian, Yuanzhi Yao, Raymond G. Najjar, Marjorie A.M. Friedrichs, Eileen E. Hofmann, Rongting Xu, Bowen Zhang

CCPO Publications

Excessive nutrient inputs from land, particularly nitrogen (N), have been found to increase the occurrence of hypoxia and harmful algal blooms in coastal ecosystems. To identify the main contributors of increased N loading and evaluate the efficacy of water pollution control policies, it is essential to quantify and attribute the long‐term changes in riverine N export. Here, we use a state‐of‐the‐art terrestrial–aquatic interface model to examine how multiple environmental factors may have affected N export from the Chesapeake Bay watershed since 1900. These factors include changes in climate, carbon dioxide, land use, and N inputs (i.e., atmospheric N deposition, animal …

Coral Oxygen Isotopic Records Capture The 2015/2016 El Niño Event In The Central Equatorial Pacific, Gemma K. O'Connor, Kim M. Cobb, Hussein R. Sayani, Alyssa R. Atwood, Pamela R. Grothe, Samantha Stevenson, Et. Al.

Earth and Environmental Sciences

Coral oxygen isotopes (δ18O) from the central equatorial Pacific provide monthly resolved records of El Niño-Southern Oscillation activity over past centuries to millennia. However, calibration studies using in situ data to assess the relative contributions of warming and freshening to coral δ18O records are exceedingly rare. Furthermore, the fidelity of coral δ18O records under the most severe thermal stress events is difficult to assess. Here, we present six coral δ18O records and in situ temperature, salinity, and seawater δ18O data from Kiritimati Island (2°N, 157°W) spanning the very strong 2015/16 El Niño event. Local sea surface temperature (SST) anomalies of …

Elevating Dissolved Oxygen—Reflections On Developing And Using Long-Term Data, Nancy N. Rabalais

Gulf and Caribbean Research

This prospectus took me about as long to generate as my 36—year record of working on the issue of northern Gulf of Mexico (nGOM) oxygen deficiency, or so I felt. There was so much to cover, but I focused on the issue of hypoxia on the Louisiana continental shelf from the early 1980s to present and my participation in the research and outreach. Not that I was ignoring other aspects of my academic research career (e.g., stone crab populations and their differences in physiology and larval development along the nGOM coast; settlement of crab megalopae, especially blue crabs, on artificial …

Variation In Coral Thermotolerance Across A Pollution Gradient Erodes As Coral Symbionts Shift To More Heat-Tolerant Genera, Melissa S. Naugle, Thomas A. Oliver, Daniel J. Barshis, Ruth D. Gates, Cheryl A. Logan

Biological Sciences Faculty Publications

Phenotypic plasticity is one mechanism whereby species may cope with stressful environmental changes associated with climate change. Reef building corals present a good model for studying phenotypic plasticity because they have experienced rapid climate-driven declines in recent decades (within a single generation of many corals), often with differential survival among individuals during heat stress. Underlying differences in thermotolerance may be driven by differences in baseline levels of environmental stress, including pollution stress. To examine this possibility, acute heat stress experiments were conducted on Acropora hyacinthus from 10 sites around Tutuila, American Samoa with differing nutrient pollution impact. A threshold-based heat …

Assessment Of Empirical And Semi-Analytical Algorithms Using Modis-Aqua For Representing In-Situ Chromophoric Dissolved Organic Matter (Cdom) In The Bering, Chukchi, And Western Beaufort Seas Of The Pacific Arctic Region, Melishia I. Santiago, Karen E. Frey

Geography

We analyzed a variety of satellite-based ocean color products derived using MODIS-Aqua to investigate the most accurate empirical and semi-analytical algorithms for representing in-situ chromophoric dissolved organic matter (CDOM) across a large latitudinal transect in the Bering, Chukchi, and western Beaufort Seas of the Pacific Arctic region. In particular, we compared the performance of empirical (CDOM index) and several semi-analytical algorithms (quasi-analytical algorithm (QAA), Carder, Garver-Siegel-Maritorena (GSM), and GSM-A) with field measurements of CDOM absorption (aCDOM) at 412 nanometers (nm) and 443 nm. These algorithms were compared with in-situ CDOM measurements collected on cruises during July 2011, 2013, 2014, 2015, …

A Global Ecological Classification Of Coastal Segment Units To Complement Marine Biodiversity Observation Network Assessments, Roger Sayre, Kevin Butler, Keith Van Graafeiland, Sean Breyer, Dawn Wright, Charlie Frye, Deniz Karagulle, Madeline Martin, Jill Cress, Tom Allen, Rebecca J. Allee, Rost Parsons, Bjorn Nyberg, Mark J. Costello, Peter Harris, Frank E. Muller-Karger

Political Science & Geography Faculty Publications

A new data layer provides Coastal and Marine Ecological Classification Standard (CMECS) labels for global coastal segments at 1 km or shorter resolution. These characteristics are summarized for six US Marine Biodiversity Observation Network (MBON) sites and one MBON Pole to Pole of the Americas site in Argentina. The global coastlines CMECS classifications were produced from a partitioning of a 30 m Landsat-derived shoreline vector that was segmented into 4 million 1 km or shorter segments. Each segment was attributed with values from 10 variables that represent the ecological settings in which the coastline occurs, including properties of the adjacent …

Response Of Coastal Ichthyoplankton Assemblages Off Northern California To Seasonal Oceanographic And Climate Variability, Blair M. Winnacott

Cal Poly Humboldt theses and projects

This study analyzed samples collected along the Trinidad Head Line (41°N) to characterize variability in the ichthyoplankton assemblage in coastal waters off northern California from late 2007 through 2019, a period during which a major marine heatwave (MHW; late 2014-16) strongly perturbed the ecosystem. I augmented visual identification with genetic techniques to resolve the species composition of visually cryptic larval rockfishes (Sebastes spp.). While taxonomic composition off northern California was largely similar to studies off Oregon and Washington, and cross-shelf structure and seasonal patterns in species’ abundance were generally consistent with the distribution and phenology of parental stocks, interannual …

Northeast Bathymetry And Backscatter Compilation: Western Gulf Of Maine, Southern New England, And Long Island Sound, Larry G. Ward, Paul Johnson, Michael Bogonko, Zachary S. Mcavoy, Rachel C. Morrison

Center for Coastal and Ocean Mapping

High-resolution bathymetry is critical for mapping the surficial geology of the seafloor, identifying critical habitats, and assessing marine mineral resources such as sand and gravel. In 2016, a high-resolution bathymetry map was developed for the western Gulf of Maine (WGOM) utilizing all available multibeam echosounder (MBES) surveys, as well as several older extant surveys (Western Gulf of Maine Bathymetry and Backscatter Synthesis, Ward et al., 2016). As part of that effort, a backscatter mosaic also was developed for a subset of the MBES surveys. The backscatter synthesis did not include all of the MBES surveys due to low quality of …

Analysis Of Vibracores From The New Hampshire Continental Shelf From 1984 And 1988, Larry G. Ward, Rachel C. Morrison, Zachary S. Mcavoy, Maxlimer Coromoto Vallee-Anziani

Center for Coastal and Ocean Mapping

During this study, the twenty-three vibracores taken in 1984 and 1988 were reexamined, original descriptions verified and significantly expanded, and the cores sampled to provide complete grain size data (i.e. the original sediment grain size analyses were limited). The vibracores were grouped by location with respect to major physiographic features (geoforms) or surficial sediment type including Offshore Marine-Modified Glacial Features (Drumlins and Lodgement Till Deposits), Northern Sand Body, Isles of Shoals, Nearshore Marine-Modified Glacial Features (Eskers and Drumlins), Nearshore Sheet Sand, and Offshore Seafloor Plain.

The Northern Sand Body (NSB), located near the Isles of Shoals ~10 km from shore, …

Surficial Geology Of The Continental Shelf Off New Hampshire: Morphologic Features And Surficial Sediment, Larry G. Ward, Zachary S. Mcavoy, Maxlimer Coromoto Vallee-Anziani, Rachel C. Morrison

Center for Coastal and Ocean Mapping

The continental shelf off New Hampshire (NH) in the Western Gulf of Maine (WGOM) is extremely complex and includes extensive bedrock outcrops, marine-modified glacial deposits, marine-formed shoals, seafloor plains, and associated features that are composed of a range of sediment types from mud to gravel. Furthermore, the physiography and composition of the seafloor frequently changes dramatically over relatively short distances (tens of meters). The complexity of the WGOM seafloor results from the interplay of glaciations, sea-level fluctuations, and marine processes (waves and currents). High-resolution multibeam echosounder (MBES) bathymetry and backscatter surveys, along with ground truth consisting of archived seismic reflection …

Rapid Quantification Of Biofouling With An Inexpensive, Underwater Camera And Image Analysis, Matthew R. First, Scott C. Riley, Kazi Aminul Islam, Victoria Hill, Jiang Li, Richard C. Zimmerman, Lisa A. Drake

Electrical & Computer Engineering Faculty Publications

To reduce the transport of potentially invasive species on ships' submerged surfaces, rapid-and accurate-estimates of biofouling are needed so shipowners and regulators can effectively assess and manage biofouling. This pilot study developed a model approach for that task. First, photographic images were collected in situ with a submersible, inexpensive pocket camera. These images were used to develop image processing algorithms and train machine learning models to classify images containing natural assemblages of fouling organisms. All of the algorithms and models were implemented in a widely available software package (MATLAB^©). Initially, an unsupervised clustering model was used, and three …

The Conservation Status Of Marine Biodiversity Of The Western Indian Ocean, R. Bullock, Gina Ralph, E. Stump, F. Al Abdali, J. Al Asfoor, B. Al Buwaiqi, A. Al Kindi, A. Ambuali, Tiffany Birge, P. Borsa, F. Di Dario, B. Everett, S. Fennessy, C. Fonseca, Claire Gorman, A. Govender, H. Ho, W. Holleman, N. Jiddawi, M. Khan, H. Larson, Christi Linardich, P. Matiku, K. Matsuura, C. Maunde, H. Motomura, T. Munroe, R. Nair, C. Obota, B. Polidoro, B. Russell, S. Shaheen, Y. Sithole, W. Smith-Vaniz, F. Uiblein, S. Weerts, A. Williams, S. Yahya, Kent Carpenter

Biological Sciences Faculty Publications

The Western Indian Ocean (WIO) is comprised of productive and highly diverse marine ecosystems that are rich sources of food security, livelihoods, and natural wonder. The ecological services that species provide are vital to the productivity of these ecosystems and healthy biodiversity is essential for the continued support of economies and local users. The stability of these valuable resources, however, is being eroded by growing threats to marine life from overexploitation, habitat degradation and climate change, all of which are causing serious reductions in marine ecosystem services and the ability of these ecosystems to support human communities. Quantifying the impacts …

Effects Of Tidal Flooding On Estuarine Biogeochemistry: Quantifying Flood-Driven Nitrogen Inputs In An Urban, Lower Chesapeake Bay Sub-Tributary, Alfonso Macías-Tapia, Margaret R. Mulholland, Corday R. Selden, J. Derek Loftis, Peter W. Bernhardt

OES Faculty Publications

Sea level rise has increased the frequency of tidal flooding even without accompanying precipitation in many coastal areas worldwide. As the tide rises, inundates the landscape, and then recedes, it can transport organic and inorganic matter between terrestrial systems and adjacent aquatic environments. However, the chemical and biological effects of tidal flooding on urban estuarine systems remain poorly constrained. Here, we provide the first extensive quantification of floodwater nutrient concentrations during a tidal flooding event and estimate the nitrogen (N) loading to the Lafayette River, an urban tidal sub-tributary of the lower Chesapeake Bay (USA). To enable the scale of …

Global Ocean Change Ocg 511, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Marine Geobiology Ocg 502, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Early Life History Of Tarpon (Megalops Atlanticus) In South Carolina Estuaries: Assessment Of Juvenile Recruitment And Validity Of Aging And Back-Calculation Methods, Garrett M. Elmo

Electronic Theses and Dissertations

No abstract provided.

Parametric Model Development For Heterogeneous Atmospheric Conditions, Daniel Paul Greenway

Electronic Theses and Dissertations

No abstract provided.

Cost-Effective Gnss Hardware For High-Accuracy Surveys And Its Prospects For Post-Processed Kinematic (Ppk) And Precise Point Positioning (Ppp) Strategies, Johnson Olusegun Oguntuase

Dissertations

This dissertation determines for the first time the vertical accuracy achievable with low-cost mass-market multi-frequency, multi-GNSS (LM3GNSS) receivers, and antennas in the context of Ellipsoid Reference Survey (ERS), usually employed in bathymetric operations aboard survey platforms. LM3GNSS receivers are relatively new in the market, and their emergence is driven by the automobile industry and several mass-market applications requiring location-based solutions at high accuracies. It is foreseeable that emerging hydrographic survey platforms such as autonomous surface vehicles, small unmanned aircraft, crowd-sourced bathymetric platforms, and offshore GNSS buoy will find LM3GNSS receivers attractive since they are power- and cost-effective (often less than …

Seasonal Variability Of Upwelling And Downwelling Surface Current Patterns Near A Small Coastal Embayment, Nicholas Trautman

Physics

Upwelling in coastal embayments is important to a variety of physical and biological processes. Despite their ubiquity, circulation patterns in small bays (width and length scales ≤ 20 km) in eastern boundary current upwelling systems are relatively understudied compared to their larger counterparts. In this study, we apply a conditional averaging technique to investigate upwelling- and downwelling-driven circulation in a small coastal embayment located in Central California [San Luis Obispo (SLO) Bay]. We also investigate intraseasonal differences in the current patterns in SLO Bay. Conditional averaging reveals distinct intraseasonal differences and features that are obscured by traditional seasonal averages when …

In The Margins: Reconsidering The Range And Contribution Of Diazotrophs In Nearshore Environments, Corday R. Selden

OES Theses and Dissertations

Dinitrogen (N₂) fixation enables primary production and, consequently, carbon dioxide drawdown in nitrogen (N) limited marine systems, exerting a powerful influence over the coupled carbon and N cycles. Our understanding of the environmental factors regulating its distribution and magnitude are largely based on the range and sensitivity of one genus, Trichodesmium. However, recent work suggests that the niche preferences of distinct diazotrophic (N₂ fixing) clades differ due to their metabolic and ecological diversity, hampering efforts to close the N budget and model N₂ fixation accurately. Here, I explore the range of N₂ fixation …