Oceanography Commons^™

Arsenic And Phosphorus Biogeochemistry In The Ocean: Arsenic Species As Proxies For P-Limitation, Oliver Wurl, Louise Zimmer, Gregory A. Cutter

OES Faculty Publications

Arsenic and phosphorus are biochemically very similar, and hence arsenate (As⁵⁺) is toxic by interfering with the energy metabolism, in particular during P limitation. However, many phytoplankton detoxify As by reducing arsenate to arsenite (As³⁺), and/or methylating it to mono and dimethyl As. Such As detoxification becomes operative in oligotrophic waters when phosphate concentrations are below those for As; therefore, we evaluated the potential use of these detoxification products as indicators of P-limitation by measuring As speciation during the US GEOTRACES North Atlantic transect. The distribution of As³⁺ concentrations in surface waters is similar to …

Intercalibraton In Chemical Oceanography-- Getting The Right Number, Gregory A. Cutter

OES Faculty Publications

Intercalibration has a strict metrological definition, but in brief, it's an open sharing of methods and results between laboratories to achieve the most accurate data with the fewest random and systematic errors. In the field of chemical oceanography where concentrations of many constituents can be in the nano- to picomolar range, the salt water matrix can be difficult to analyze, and knowing the exact concentrations, or even chemical forms, of biologically required elements is essential, intercalibration is a very relevant and needed tool. Implementing it is not simple because errors can occur at any step in the process of taking …

Phosphorus Cycling In The Sargasso Sea: Investigation Using The Oxygen Isotopic Composition Of Phosphate, Enzyme-Labeled Fluorescence, And Turnover Times, Karen Mclaughlin, Jill A. Sohm, Gregory A. Cutter, Michael W. Lomas, Adina Paytan

OES Faculty Publications

Dissolved inorganic phosphorus (DIP) concentrations in surface water of vast areas of the ocean are extremely low (<10 nM) and phosphorus (P) availability could limit primary productivity in these regions. We explore the use of oxygen isotopic signature of dissolved phosphate (δ¹⁸O_PO4) to investigate biogeochemical cycling of P in the Sargasso Sea, Atlantic Ocean. Additional techniques for studying P dynamics including ³³P-based DIP turnover time estimates and percent of cells expressing alkaline phosphatase (AP) activity as measured by enzyme-labeling fluorescence are also used. In surface waters, δ¹⁸O_PO4 values were lower than equilibrium by 3–6%, indicative of dissolved organic phosphorous (DOP) remineralization by extracellular enzymes. An isotope mass balance model using a variety of possible combinations of …

Using Ammonium Pore Water Profiles To Assess Stoichiometry Of Deep Remineralization Processes In Methanogenic Continental Margin Sediments, David J. Burdige, Tomoko Komada

OES Faculty Publications

In many continental margin Sediments, a deep reaction zone exists which is separated from remineralization processes near the sediment surface. Here, methane diffuses upward to a depth where it is oxidized by downwardly diffusing sulfate. However, the methane sources that drive this anaerobic oxidation of methane (AOM) in the sulfate-methane transition zone (SMT) may vary among sites. In particular, these sources can be thought of as either (i) "internal" sources from in situ methanogenesis (regardless of where it occurs in the sediment column) that are ultimately coupled to organic matter deposition and burial, or (ii) "external" sources such as hydrocarbon …

Diatom Proteomics Reveals Unique Acclimation Strategies To Mitigate Fe Limitation, Brook L. Nunn, Jessica F. Faux, Anna A. Hippman, Maria T. Maldonado, H. Rodger Harvey, David R. Goodlett, Philip W. Boyd, Robert F. Strzepek

OES Faculty Publications

Phytoplankton growth rates are limited by the supply of iron (Fe) in approximately one third of the open ocean, with major implications for carbon dioxide sequestration and carbon (C) biogeochemistry. To date, understanding how alteration of Fe supply changes phytoplankton physiology has focused on traditional metrics such as growth rate, elemental composition, and biophysical measurements such as photosynthetic competence (Fv/Fm). Researchers have subsequently employed transcriptomics to probe relationships between changes in Fe supply and phytoplankton physiology. Recently, studies have investigated longer-term (i.e. following acclimation) responses of phytoplankton to various Fe conditions. In the present study, the coastal diatom, Thalassiosira pseudonana, …

Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones

OES Faculty Publications

Life history scans of fish otoliths are bringing new insight into the structure, connectivity, and movement of fish populations. Data obtained from such scans, however, possess in-herent limitations that have not yet been fully addressed or understood. For example, several investigators have noted delays in otolith elemental uptake that do not appear to reflect habitat exposure. We hypothesized that the 3-dimensional structure of otoliths may produce sampling artifacts in the results obtained from laser ablation scans. To test this hypothesis, we sampled sagittal otoliths from juvenile Atlantic croaker Micropogonias undulatus with laser ablation inductively coupled plasma mass spectrometry to obtain …

Isotopic (Δ13c, Δ14c) Analysis Of Organic Acids In Marine Samples Using Wet Chemical Oxidation, Susan Q. Lang, G. L. Früh-Green, S. M. Bernasconi, L. Wacker

Faculty Publications

We present a method for the isolation and off-line isotope analysis of formate and acetate in marine samples. Organic acids are separated by high performance liquid chromatography and collected in glass Exetainer® screw-capped vials that have been prespiked with an oxidant and flushed with helium. The vials are subsequently heated to convert the organic compounds to CO₂ for radiocarbon and δ¹³C analysis. Small aliquots are sampled for measurement of δ¹³C by isotope ratio mass spectrometry, whereas the majority of the CO₂ is saved for radiocarbon analysis by accelerator mass spectrometry using a gas ion …

Extreme Wave Events In Ireland: 14 680 Bp–2012, Laura Cooke, John M. Dudley, Frédéric Dias

Articles

The island of Ireland is battered by waves from all sides, most ferociously on the west coast as the first port of call for waves travelling across the Atlantic Ocean. However, when discussing ocean events relevant to the nation of Ire- land, one must actually consider its significantly larger designated continental shelf, which is one of the largest seabed territories in Europe. With this expanded definition, it is not surprising that Ireland has been subject to many oceanic events which could be designated as “extreme”; in this paper we present what we believe to be the first catalogue of such …

Conservation Mooring Study, Urban Harbors Institute, University Of Massachusetts Boston

Urban Harbors Institute Publications

Most boaters who moor their vessels in Massachusetts waters have traditionally employed free swinging moorings that use heavy bottom chain. In important sensitive habitats such as eelgrass beds, these types of moorings often have negative impacts on the benthic habitat – from the circular movement of the chain around the anchor point, and/or from the anchor itself.

This document objectively describes the different characteristics of conventional moorings versus conservation moorings designed to minimize disruption to the benthic habitat. This report includes discussions on the following topics:

• Technologies available
• Ecological impacts
• Functional differences
• Economical differences
• Regulatory issues

These comparisons, along with …

Contribution Of The Pacific Decadal Oscillation To Global Mean Sea Level Trends, B. D. Hamlington, R. R. Leben, M. W. Strassburg, R. S. Nerem, K-Y. Kim

CCPO Publications

Understanding and explaining the trend in global mean sea level (GMSL) have important implications for future projections of sea level rise. While measurements from satellite altimetry have provided accurate estimates of GMSL, the modern altimetry record has only now reached 20 years in length, making it difficult to assess the contribution of decadal to multidecadal climate signals to the global trend. Here, we use a sea level reconstruction to study the 20 year trends in sea level since 1950. In particular, we show that the Pacific Decadal Oscillation (PDO) contributes significantly to the 20 year trends in GMSL. We estimate …

Extracting Tidal Variability Of Sea Ice Concentration From Amsr-E Passive Microwave Single-Swath Data: A Case Study Of The Ross Sea, Stefanie Mack, Laurie Padman, John M. Klinck

CCPO Publications

The periodic divergence of stress applied by ocean tidal currents to sea ice affects the time-averaged ice concentration (C_ice) and heat and freshwater fluxes at the ocean surface. We demonstrate that, at sufficiently high latitudes, tidal variability in C_ice can be extracted from single-swath data from the Advanced Microwave Scanning Radiometer–EOS (AMSR-E) satellite passive microwave sensor, although time intervals between swaths are irregular. For the northwest Ross Sea where tidal currents are large, tidal divergence is the dominant cause of C_ice variability in winter, with a range of ±0.2 about a mean of ~0.8. Daily-averaged C …

Us Globec: Program Goals, Approaches, And Advances, Elizabeth Turner, Eileen E. Hofmann, Dale B. Haidvogel, Harold P. Batchelder, Michael J. Fogarty, Thomas Powell

CCPO Publications

No abstract provided.

John H. Steele, 1926–2013, Elizabeth Turner, Eileen E. Hofmann, Dian J. Gifford, Dale B. Haidvogel

CCPO Publications

No abstract provided.

Air-Sea Dimethylsulfide (Dms) Gas Transfer In The North Atlantic: Evidence For Limited Interfacial Gas Exchange At High Wind Speed, T. G. Bell, Warren J. De Bruyn, S. D. Miller, B. Ward, K. Christensen, E. S. Saltzman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Shipboard measurements of eddy covariance dimethylsulfide (DMS) air-sea fluxes and seawater concentration were carried out in the North Atlantic bloom region in June/July 2011. Gas transfer coefficients (k(660)) show a linear dependence on mean horizontal wind speed at wind speeds up to 11 m s(-1). At higher wind speeds the relationship between k(660) and wind speed weakens. At high winds, measured DMS fluxes were lower than predicted based on the linear relationship between wind speed and interfacial stress extrapolated from low to intermediate wind speeds. In contrast, the transfer coefficient for sensible heat did not exhibit this effect. The apparent …

Editorial-The 4th International Workshop On Modeling The Ocean (Iwmo 2012), Lie-Yauw Oey, Yasumasa Miyazawa, Hidenori Aiki, Yukio Masumoto, Tal Ezer, Takuji Waseda

CCPO Publications

The 4th International Workshop on Modeling the Ocean (IWMO; http://www.jamstec.go.jp/frcgc/jcope/htdocs/e/ iwmo2012.html) was held on May 21–24, 2012 in the vibrant city of Yokohama on the Tokyo Bay, Japan. The Workshop was hosted by Japan Agency for Marine-Earth Science and Technology (JAMSTEC)—the home of the famous “Earth Simulator”—one of the world's most powerful supercomputers dedicated for simulating the complex interactive processes of the earth and its environment.

Sea Level Rise And Flooding Risk In Virginia, Larry P. Atkinson, Tal Ezer, Elizabeth Smith

CCPO Publications

Consistent rises in sea level have occurred throughout the world for thousands of years. Flooding, storm surges, and other consequences of the rise in sea level have had widespread effects on coastal communities across the globe. Nowhere is this more apparent than the Norfolk/Virginia Beach region along the U.S. Atlantic coastline, where the sea level is rising more rapidly than the global average. This article discusses the causes of and the differences between the rise in sea levels globally and the rise of the sea level in the mid-­Atlantic region of the United States. The article also emphasizes the problems …

Production Mechanisms, Number Concentration, Size Distribution, Chemical Composition, And Optical Properties Of Sea Spray Aerosols, Nicholas Meskhidze, Markus D. Petters, Kostas Tsigaridis, Tim Bates, Colin O'Dowd, Jeff Reid, Ernie R. Lewis, Brett Gantt, Magdalena D. Anguelova, Prakash V. Bhave, Andrew Wozniak

Chemistry & Biochemistry Faculty Publications

(First paragraph)

The impact of sea spray aerosols on global climate remains one of the most uncertain components of the aerosol–radiation–climate problem, but has received less attention than the impacts of terrestrial and anthropogenic aerosols. The last decade has produced a large body of information regarding the sources and composition of marine aerosols, resulting in a reassessment of the complex role that sea spray particles play in climate and various geophysical phenomena. As sea spray aerosol contributes substantially to the preindustrial, natural background which provides the baseline on top of which anthropogenic forcing should be quantified, and because the ocean …

Improved Method For Quantifying The Air-Sea Flux Of Volatile And Semi-Volatile Organic Carbon, Emily Hauser, Rebecca M. Dickhut, Renee Falconer, Andrew S. Wozniak

Chemistry & Biochemistry Faculty Publications

A method for quantifying the diffusive air-sea exchange of gaseous organic carbon (OC) was developed. OC compounds were separated into two operational pools-those that were kinetically air limited in diffusion across the air-sea interface and those that were water limited-during simultaneous air/water sampling. The method separates OC compounds into low Henry's law constant (low-H) semivolatile OC (SOC) and high Henry's law constant (high-H) volatile OC (VOC) pools that can be categorized by relating diffusion kinetic parameters to Henry's Law constant. Air limited (low-H; H << similar to 0.1 L atm mol(^-1)) compounds were collected in pure water traps and were quantified as dissolved OC, whereas …

Seasonal Dynamics Of Mesodinium Rubrum In Chesapeake Bay, Matthew D. Johnson, Doane K. Stoecker, Harold G. Marshall

Biological Sciences Faculty Publications

The photosynthetic ciliate Mesodinium rubrum is a common member of coastal phytoplankton communities that is well adapted to low-light, turbid ecosystems. It supports the growth of, or competes with, harmful dinoflagellate species for cryptophyte prey, as well as being a trophic link to copepods and larval fish. We have compiled data from various sources (n = 1063), on the abundance and distribution of M. rubrum in Chesapeake Bay and its tributaries. Because M. rubrum relies on obtaining organelles from cryptophyte algae to maintain rapid growth, we also enumerated cryptophyte algae in the portion of these samples that we collected …

Pronounced Genetic Structure In A Highly Mobile Coral Reef Fish, Caesio Cuning, In The Coral Triangle, Amanda S. Ackiss, Shinta Pardede, Eric D. Crandall, Ma Carmen A. Ablan-Lagman, Ambariyanto, November Romena, Paul H. Barber, Kent E. Carpenter

Biological Sciences Faculty Publications

The redbelly yellowtail fusilier Caesio cuning has a tropical Indo-West Pacific range that straddles the Coral Triangle, a region of dynamic geological history and the highest marine biodiversity on the planet. Previous genetic studies in the Coral Triangle indicate the presence of multiple limits to connectivity. However, these studies have focused almost exclusively on benthic, reef-dwelling species. Schooling, reef-associated fusiliers (Perciformes: Caesionidae) account for a sizable portion of the annual reef catch in the Coral Triangle, yet to date, there have been no indepth studies on the population structure of fusiliers or other mid-water, reef-associated planktivores across this region. We …

A Preliminary Examination Of An In Situ Dual Dye Approach To Measuring Light Fluxes In Lotic Systems, Elizabeth C. Minor, Elizabeth James, Jay A. Austin, Veronica Nelson, Ryan Lusk, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Light is a critical parameter in aquatic ecosystems, affecting primary production and in situ photochemistry. However, measuring light exposure for suspended particles or dissolved components in a dynamic water column can be challenging with existing Eulerian approaches. Here, we assess the simultaneous deployment of two dyes differing in photolability (rhodamine WT and fluorescein) as a Lagrangian measure of sunlight exposure in a lotic system. Fluorescein is sensitive to light exposure; rhodamine WT is relatively photostable. We examined dye fluorescence at various pH, salinity, and temperature conditions. We also tested dye photolability as a function of pH and wavelength range. In …

Satellite-Based Estimates Of Antarctic Surface Meltwater Fluxes, Luke D. Trusel, Karen E. Frey, Sarah B. Das, Peter Kuipers Munneke, Michiel R. Van Den Broeke

Geography

This study generates novel satellite-derived estimates of Antarctic-wide annual (1999-2009) surface meltwater production using an empirical relationship between radar backscatter from the QuikSCAT (QSCAT) satellite and melt calculated from in situ energy balance observations. The resulting QSCAT-derived melt fluxes significantly agree with output from the regional climate model RACMO2.1 and with independent ground-based observations. The high-resolution (4.45 km) QSCAT-based melt fluxes uniquely detect interannually persistent and intense melt (>400 mm water equivalent (w.e.) year-1) on interior Larsen C Ice Shelf that is not simulated by RACMO2.1. This supports a growing understanding of the importance of a föhn effect in …

Ice Sheet Record Of Recent Sea-Ice Behavior And Polynya Variability In The Amundsen Sea, West Antarctica, Alison S. Criscitiello, Sarah B. Das, Matthew J. Evans, Karen E. Frey, Howard Conway, Ian Joughin, Brooke Medley, Eric J. Steig

Geography

[1] Our understanding of past sea-ice variability is limited by the short length of satellite and instrumental records. Proxy records can extend these observations but require further development and validation. We compare methanesulfonic acid (MSA) and chloride (Cl-) concentrations from a new firn core from coastal West Antarctica with satellite-derived observations of regional sea-ice concentration (SIC) in the Amundsen Sea (AS) to evaluate spatial and temporal correlations from 2002-2010. The high accumulation rate (∼39 g·cm-2·yr-1) provides monthly resolved records of MSA and Cl-, allowing detailed investigation of how regional SIC is recorded in the ice-sheet stratigraphy. Over the period 2002-2010 …

Trophic Ecology Of Oxygen Minimum Zone Zooplankton Revealed By Carbon And Nitrogen Stable Isotopes, Rebecca Williams

Open Access Dissertations

Oxygen minimum zones (OMZs) are areas in which midwater oxygen concentration can be significantly lower than in non OMZ areas at comparable depths. OMZs are of great interest because of the limits oxygen availability places on life. The potential for OMZ expansion with warming of the oceans has refocused attention on the importance of these areas and their potential impacts on the global carbon cycle. The large open ocean OMZs of the Eastern Tropical Pacific and Arabian Sea are notable for their size, thickness, and the intensity of oxygen depletion (

Here, I use measurements of natural abundance carbon and …

The Combined Effects Of Light And Temperature On Coral Bleaching: A Case Study Of The Florida Reef Tract Using Satellite Data, Brian Burnel Barnes

USF Tampa Graduate Theses and Dissertations

Coral reefs are greatly impacted by the physical characteristics of the water surrounding them. Incidence and severity of mass coral bleaching and mortality events are increasing worldwide due primarily to increased water temperature, but also in response to other stressors. This decline in reef health demands clearer understanding of the compounding effects of multiple stressors, as well as widespread assessment of coral reef health in near-real time.

Satellites offer a means by which some of the physical stressors on coral reefs can be measured. The synoptic spatial coverage and high repeat sampling frequency of such instruments allow for a quantity …

Millennial Scale Impact On The Marine Biogeochemical Cycle Of Mercury From Early Mining On The Iberian Peninsula, Oscar Serrano Gras, A. Martinez-Cortizas, M. A. Mateo, H. Biester, R. Bindler

Research outputs 2013

The high-resolution mercury record of a Posidonia oceanica mat in the northwest Mediterranean provides an unprecedented testimony of changes in environmental mercury (Hg) loading to the coastal marine environment over the past 4315 yr BP. The period reconstructed made it possible to establish tentative preanthropogenic background Hg levels for the area (6.8!1.5 ng g–1 in bulk sediments). A small, but significant, anthropogenic Hg increase was identifiable by ~2500 yr BP, in agreement with the beginning of intense mining in Spain. Changes in the record suggest four major periods of anthropogenic Hg pollution inputs to the Mediterranean: first, during the Roman …

Meta-Analysis Reveals Complex Marine Biological Responses To The Interactive Effects Of Ocean Acidification And Warming, Ben P. Harvey, Dylan Gwynn-Jones, Philippa J. Moore

Research outputs 2013

Ocean acidification and warming are considered two of the greatest threats to marine biodiversity, yet the combined effect of these stressors on marine organisms remains largely unclear. Using a meta-analytical approach, we assessed the biological responses of marine organisms to the effects of ocean acidification and warming in isolation and combination. As expected biological responses varied across taxonomic groups, life-history stages, and trophic levels, but importantly, combining stressors generally exhibited a stronger biological (either positive or negative) effect. Using a subset of orthogonal studies, we show that four of five of the biological responses measured (calcification, photosynthesis, reproduction, and survival, …

Understanding Transport Variability Of The Antarctic Circumpolar Current Using Ocean Bottom Pressure, Jessica Makowski

USF Tampa Graduate Theses and Dissertations

Previous studies have suggested that ocean bottom pressure (OBP) can be used to measure the transport variability of the Antarctic Circumpolar Current (ACC). The OBP observations from the Gravity Recovery and Climate Experiment (GRACE) are used to calculate transport along the choke point between Antarctica and Australia. Statistical analysis will be conducted to determine the uncertainty of the GRACE observations using a simulated data set.

There has been some evidence to suggest that Southern Hemisphere winds and the Southern Annular Mode (SAM) or the Antarctic Oscillation (AAO) play a significant role in accelerating/decelerating ACC transport, along with some contribution from …

Synoptic To Interannual Variability In Volumetric Flushing In Tampa Bay, Fl Using Observational Data And A Numerical Model, Monica Wilson

USF Tampa Graduate Theses and Dissertations

This research provides insight into changes in volumetric flushing of the Tampa Bay estuary caused by synoptic scale wind events. The two main studies of this dissertation involve 1) using wavelet analysis to investigate the link between the El Niño-Southern Oscillation (ENSO) and the frequency and strength of volumetric flushing driven by synoptic variability and 2) using a multi-decadal model simulation to examine how extratropical/winter storms and hurricanes affect the overall flushing rates for Tampa Bay, FL.

In the first study, two analyses are performed on 55 years of observational data to investigate the effect of multiple small wind events …

Observations And Modeling Forcing Mechanisms For The Coastal Dynamics Of The Upper Gulf Of Thailand, Suriyan Saramul

OES Theses and Dissertations

A numerical model based on the Princeton Ocean Model (130M) with ∼1 km horizontal grid and 21 vertical layers has been used to study the influence of wind stresses, river discharges, surface heat fluxes and tides on the three-dimensional circulation of the upper Gulf of Thailand (UGOT). Analysis of observations, including sea level data, provided additional information to support the model simulations. The UGOT is a shallow coastal system, ∼1°×1° in size with the average depth of only 15 m. Sensitivity studies evaluate how the dynamics is affected by surface wind stresses, river discharges, and surface heat fluxes. The impact …