Oceanography Commons^™

Marsh-Exported Dissolved Organic Matter Fate In Estuaries, Laura Ann Logozzo

Dissertations and Theses

Dissolved organic matter (DOM) is a significant driver of estuarine productivity and nutrient cycling. The colored component of DOM, chromophoric dissolved organic matter (CDOM), impacts coastal optical properties, ocean color, and light attenuation. While marshes are largely considered sinks for carbon due to their high productivity and low soil carbon degradation rates, laterally they are sources of carbon as optically and chemically distinct DOM to surrounding aquatic ecosystems; these inputs are often essential in sustaining a net heterotrophic system. However, the photoreactivity and bioavailability of marsh-exported DOM is largely uncategorized, thus making it difficult to quantify its impacts on estuarine …

The Effects Of Thermal Stress On Fluorescent Protein Expression In An Indo-Pacific Scleractinian Coral Species, Acropora Tenuis, Anna Knochel

Independent Study Project (ISP) Collection

The scleractinian coral species that so heavily define tropical coral reefs are increasingly threatened by anthropogenic global warming. Rising sea surface temperatures in combination with light stress causes the photosynthetic breakdown of the coral’s algal symbiont, Symbiodinium. Corals have developed a number of physiological responses to handle acute stressors, such as the production of ultraviolet-protecting amino acids, heat shock proteins, the ability to shift symbionts, and the production of fluorescent proteins. The latter has been thought to play a photoprotective role in the coral holobiont, and studies have shown evidence that corals orient these pigments to divert harmful light away …

Addressing Calcium Carbonate Cycling In Blue Carbon Accounting, Peter I. Macreadie, Oscar Serrano, Damien T. Maher, Carlos M. Duarte, John Beardall

Research outputs 2014 to 2021

Scientific Significance Statement

There is considerable interest in measuring the capacity of the world's ecosystems to trap and store excess atmospheric carbon dioxide to mitigate human‐induced climate change. Blue carbon describes the carbon storage potential of vegetated coastal ecosystems including tidal marshes, mangroves, and seagrasses. Efforts are now underway to include blue carbon in global carbon offset schemes by managing these ecosystems to enhance carbon sequestration by focusing on their effect on organic carbon processing. However, it is unclear what role inorganic carbon processing in blue carbon ecosystems plays in their overall carbon sequestration. Here, we argue that there are …

Fukushima Daiichi-Derived Radionuclides In The Ocean: Transport, Fate, And Impacts, Ken O. Buesseler, Minhan Dai, Michio Aoyama, Claudia R. Benítez-Nelson,, Sabine S. Charmasson, Kathryn A. Higley, Vladimir S. Maderich, Pere Masqué, Paul J. Morris, Deborah H. Oughton, John N. Smith

Research outputs 2014 to 2021

The events that followed the Tohoku earthquake and tsunami on March 11, 2011, included the loss of power and overheating at the Fukushima Daiichi nuclear power plants, which led to extensive releases of radioactive gases, volatiles, and liquids, particularly to the coastal ocean. The fate of these radionuclides depends in large part on their oceanic geochemistry, physical processes, and biological uptake. Whereas radioactivity on land can be resampled and its distribution mapped, releases to the marine environment are harder to characterize owing to variability in ocean currents and the general challenges of sampling at sea. Five years later, it is …

Historical Reconstructions Of Water Quality In The Kimberley Using Sediment Records. Report Of 2.2.9 Prepared For The Kimberley Marine Research Program, John Keesing, Dongyan Liu, Zineng Yuan, Yajun Peng, Yujue Wang, Pierre Richard, Pere Masque, Yingjun Chen, Yin Fang

Research outputs 2014 to 2021

This project made use of a suite of palaeoecological approaches to reconstruct a chronology of change in coastal water quality over the last approximately 100 years. The biogeochemical proxies addressed phytoplankton composition and biomass, temperature and terrestrial influences. Where possible these were matched to historical land/water use, meteorological or hydrological observational records.

The project examined sediment cores from three coastal locations in the Kimberley region, Koolama Bay (King George River), Cygnet Bay and Roebuck Bay. Each sampling location provided a contrast with which to evaluate changes over either a spatial or temporal gradient of human or natural influences.

Aims

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Fit To Predict? Ecoinformatics For Predicting The Catchability Of A Pelagic Fish In Near Real-Time, Kylie L. Scales, Elliot L. Hazen, Sara M. Maxwell, Heidi Dewar, Suzanne Kohin, Michael G. Jacox, Christopher A. Edwards, Dana K. Briscoe, Larry B. Crowder, Rebecca L. Lewison, Steven J. Bograd

Biological Sciences Faculty Publications

The ocean is a dynamic environment inhabited by a diverse array of highly migratory species, many of which are under direct exploitation in targeted fisheries. The timescales of variability in the marine realm coupled with the extreme mobility of ocean-wandering species such as tuna and billfish complicates fisheries management. Developing ecoinformatics solutions that allow for near real-time prediction of the distributions of highly mobile marine species is an important step towards the maturation of dynamic ocean management and ecological forecasting. Using 25 years (1990-2014) of NOAA fisheries' observer data from the California drift gillnet fishery, we model relative probability of …

Effect Of Small-Scale Continental Shelf Bathymetry On Storm Surge Generation, Sunni A. Siqueira

LSU New Orleans Theses and Dissertations

Idealized bathymetries were subjected to idealized cyclones in order to measure the storm surge response to a range of bathymetry features, under various storm conditions. Ten bathymetries were considered, including eight shoals, one pit, and a featureless reference domain. Six storms (two different sizes/intensities and three different landfall directions) were used as meteorological forcing. The bathymetry features influenced local surge response during pre- and post-peak surge conditions. However, peak surge and surge at the coast were not meaningfully affected by the presence of the bathymetry features considered. The effect of three bathymetry feature parameters on surge response was analyzed (i.e. …

Effects Of Temperature On Activity Of Aquatic Hyphomycetes: A Microcosm Study, Kyra Harrington‌‌

Honors Theses

Predicted increases in temperature under climate change scenarios are expected to affect not only atmospheric and water temperatures, but also the rate of heterotrophic activity and carbon dynamics and retention in ecosystems. The magnitude of the increase in metabolic activity of living organisms with increased temperature can be predicted by the Metabolic Theory of Ecology, however, multiple factors can cause deviations from simple predictions. The goal of this study is to assess the temperature sensitivity of aquatic hyphomycetes and fungi-mediated leaf litter decomposition by following responses to temperature of fungal biomass accrual, respiration and decomposition rates in laboratory microcosms simulating …

Sea Surface Temperature Rises Shift Migration Patterns Due To Ecosystem Changes, Alexia Skrbic, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

The continuing climate change is negatively impacting ecosystems, specifically oceans which are declining and food webs are being altered by the increase of greenhouse gases. The increase of the carbon dioxide and other greenhouse gases is increasing sea surface temperature of the world’s oceans. Certain organisms lower on the food chain like phytoplankton and zooplankton are directly affected by the warming which alters how they process nutrients and their productivity. The limited amount of these primary producers in the oceans and specifically the location they inhabit directly affects all the organisms above them on the food chain. Several marine animals …

Modern Fair-Weather And Storm Sediment Transport Around Ship Island, Mississippi: Implications For Coastal Habitats And Restoration Efforts, Eve Rettew Eisemann

Master's Theses

The Mississippi – Alabama barrier island chain is experiencing accelerated sea level rise, decreased sediment supply, and frequent hurricane impacts. These three factors drive unprecedented rates of morphology change and ecosystem reduction. All islands in the chain have experienced land loss on the order of hectares per year since records began in the 1840s. In 1969, Hurricane Camille impacted as a Category 5, breaching Ship Island, and significantly reduced viable seagrass habitat. Hurricane Katrina impacted as a Category 3 in 2005, further widening Camille Cut. To better understand the sustainability of these important islands and the ecosystems they support, sediment …

Bloom Or Bust: Retrospective Analysis Of The Giant Jellyfish, Nemopilema Nomurai (Scyphozoa: Rhizostomeae), Ecology In The East Asian Marginal Seas, Naomi Yoder

Master's Theses

The Giant Jellyfish, Nemopilema nomurai, is a large-bodied bloom-forming jellyfish that occurs in the semi-enclosed basins of the East Asian Marginal Seas. N. nomurai has bloomed more frequently in the past 20 years than in any period previously recorded. In Japan, recent N. nomurai blooms were responsible for millions of dollars in lost revenue and equipment damage to commercial fisheries alone. This study statistically analyzed 21 environmental factors in connection with N. nomurai occurrence (using occurrence as a proxy for blooms). Eight factors resulted in a statistically significant or marginally significant (p ≤ 0.10), linear or non-linear relationship with …

The Tolerance Of Benthic Infauna To Fine-Grained Organic Rich Sediments In A Shallow Subtropical Estuary, Daniel Christopher Hope

Theses and Dissertations

Fine-grained organic-rich sediments (FGORS) from anthropogenic impacts are a growing concern for bays and estuaries around the world. This study explores the relationships between infaunal community diversity and species’ abundances with FGORS in the Indian River Lagoon and its tributaries. To examine these potential relationships, infauna were collected monthly using a Petit Ponar grab at 16 stations in the central Indian River Lagoon from October 2015 to August 2016. Abundant taxa in these sediments include polychaete worms (e.g., the polychaete Nereis succinea), molluscs (e.g., clam Parastarte triquetra), and arthropods (e.g., the tanaid Leptochelia dubia) with densities as high as 5.3x10⁴ …

Categorizing “Muck” In The Indian River Lagoon, Florida, Based On Chemical, Physical And Biological Characteristics, Katherine Mae Beckett

Theses and Dissertations

During the past six decades, the thickness and areal extent of muck sediments have continually increased in the Indian River Lagoon (IRL), Florida. These sediments are anoxic, store and release nutrients, and destroy natural benthic habitats. The main objective of this research was to develop guidelines that help prioritize sites for muck removal based on the following: (1) biological abundance and diversity, (2) muck thickness, and (3) the physical and chemical composition of muck. Thinner muck deposits (20-40 cm), collected during two seasons at eight locations in the lagoon and adjacent creeks, had greater variability in sediment composition and ~5 …

The Role Of Biotic And Environmental Factors In Spatial And Temporal Variability Of Indian River Lagoon Copepod Communities, Hannah G. Kolb

Theses and Dissertations

The role of zooplankton communities as the link between phytoplankton and secondary consumers is dependent on the species make-up of the copepod community. Copepods often dominate zooplankton in numbers and biomass and are frequently the dominant grazers. Species variabilities in behavioral and morphological traits, and seasonal variances in species make-up, have the potential to alter trophic dynamics in planktonic communities. The goal of this study was to identify the driving forces behind copepod community composition and better understand the role of key species in the Northern Indian River Lagoon (N-IRL). Copepods made up 76% of the N-IRL zooplankton community and …

Exploring The Role Of Biofilms In The Transport And Establishment Of Invasive Marine Macrofoulers, Lynn Holly Sweat

Theses and Dissertations

Biofilms dominated by bacteria and diatoms universally colonize submerged surfaces and mediate larval recruitment in benthic marine systems. The ability for macrofoulers to be transported by vessels and become globally established is likely affected by cues from the biofilm organisms they encounter. This study investigates how macrofoulers respond to biofilms shaped by local geography, transport processes and relocation. Biofilm assemblages in neighboring ports were largely unique to the site at which they were developed. Bacteria were primary drivers of variations among sites, and overall bacterial richness was an order of magnitude higher than has been reported for other marine environments. …

Benthic Foraminiferal Distributions In A Shallow Subtropical Estuary And The Influence Of Environmental Factors, Maria Angelica Zamora-Durán

Theses and Dissertations

Benthic foraminiferal communities are potentially useful tools for assessing and monitoring estuarine ecosystems and as bioindicators of water quality and pollution. To evaluate this indicator for the Indian River Lagoon (IRL) benthic ecosystem, the densities and distributions of Foraminifera were measured in Turkey Creek (Palm Bay, Florida), Crane Creek (Melbourne, Florida), and the adjacent IRL. Spatial population patterns were compared with parameters characterizing benthic sediments, including silt and clay content, organic matter (OM), and associated boundary water column conditions including salinity, temperature, and dissolved oxygen (DO. Samples (n=145) were collected from October 2015 to December 2015 at 12 locations. Four …

Holocene Glacial Activity In Barilari Bay, West Antarctic Peninsula, Tracked By Magnetic Mineral Assemblages: Linking Ice, Ocean, And Atmosphere, Brendan Reilly, Carl Natter, Stefanie A. Brachfeld

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

We investigate the origin and fate of lithogenic sediments using magnetic mineral assemblages in Barilari Bay, west Antarctic Peninsula (AP) from sediment cores recovered during the Larsen Ice Shelf System, Antarctica (LARISSA) NBP10-01 cruise. To quantify and reconstruct Holocene changes in covarying magnetic mineral assemblages, we adopt an unsupervised mathematical unmixing strategy and apply it to measurements of magnetic susceptibility as a function of increasing temperature. Comparisons of the unmixed end-members with magnetic observations of northwestern AP bedrock and the spatial distribution of magnetic mineral assemblages within the fjord, allow us to identify source regions, including signatures for ‘‘inner bay,’’ …

Evaluation Of Search And Rescue Planning Tools On The West Florida Shelf, Benjamin O'Loughlin

USF Tampa Graduate Theses and Dissertations

The Coast Guard conducts over 20,000 search and rescue cases a year with approximately 5% of them occurring within the coastal waters of the West Florida Shelf (WFS). Each search effort is planned using the Coast Guard’s Search and Rescue Optimal Planning System (SAROPS) which uses model inputs to create composite probability distributions based on the results of Monte Carlo projections of thousands of particle trajectories. However, SAROPS is limited by the quality of model inputs and their associated errors. This study utilizes observations from three surface drifter deployments on the WFS to evaluate the effectiveness of available surface current …

Wrack Lines Fall/Winter 2016, Peg Vanpatten

Wrack Lines

This is the entire Fall/Winter 2016 issue of Wrack Lines magazine. Topics include fisheries, Atlantic sturgeon, resilient gardening, healthy ecosystems, salt marshes and salinity, and Rachel Carson's rising seas.

A Study Of Defensive Mechanisms Employed By Two Species Of Nudibranchs Using Toxicity And Unpalatability Analyses, Sean Youn

Independent Study Project (ISP) Collection

Nudibranchs are marine invertebrates that have developed an intriguing defense mechanism, including warning coloration and the use of chemicals accumulated through their sponge diet. The goal of this study was to determine whether the strength of chemical defenses differs between dietary and accumulated secondary metabolites for two species: Glossodoris vespa and Ceratosoma brevicaudatum. First, NMR spectroscopy was used to not only identify specific compounds in the mantle (outer covering) and the viscera (gut) but also to analyze the possibility of nudibranch species transporting more toxic compounds for defensive purposes. Next, toxicity (brine shrimp) and palatability (Palaemon shrimp) assays were used …

Coral Disease In Chumbe Island Coral Park: A Baseline Survey Of The Prevalence Of Coral Disease And Other Afflictions Within Chumbe Marine Protected Area, Hannah Turley

Independent Study Project (ISP) Collection

Coral mortality from disease and other afflictions is a rising concern for reefs around the world. The aim of this study was to provide to a baseline for the prevalence of coral disease and other afflictions, which indicate compromised coral health, in Chumbe Island Coral Park, Zanzibar, Tanzania. Chumbe's reef experienced a widespread bleaching event earlier this year and this baseline study will provide a starting point to see how the bleaching event affected the prevalence of disease and other afflictions within the reef. A baseline study will also allow the park to investigate if their current monitoring procedures are …

Fish Diversity And Coral Health Of Tanzania's Reefs: A Comparative Study Between The Ushongo Village Reef And The Fungu Zinga Reef Over Time, Della Turque, Corinne Casper

Independent Study Project (ISP) Collection

The world’s oceans are becoming increasing acidic due to global climate change, posing a threat to marine ecosystems, including coral carbonate systems. Environmental threats are exacerbated by human development stressors as well: growing populations, dependency on marine resources, and unsustainable practices invaluable marine ecosystems at risk. Tanzania’s coral reef system extends for 3580 km2 (Muhando et al. 2008) near the Tanga region, serving over half a million people who are highly dependent on fishing and other marine resources as their livelihoods (Samoilys et. al. 2008). With Tanzania’s population rapidly growing, the unsustainable pressure on coral reefs for sustenance and livelihood …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

Alongcoast Structure And Interannual Variability Of Seasonal Midshelf Water Properties And Velocity In The Northern California Current System, B. Hickey, S. Geier, N. Kachel, S. Ramp, P. Kosro, Thomas Connolly

Faculty Publications

Moored sensors were maintained for ∼5 years on the northern California Current System (CCS) midshelf. The alongcoast sensor array spanned the area of influence of the plume from the Columbia River, several submarine canyons, as well as a coastal promontory where the equatorward coastal jet frequently separates from the shelf. Upwelling-favorable wind stress magnitude decreases poleward by more than a factor of three over the latitudinal range and shelf width varies by a factor of two. In spite of the alongcoast structure in setting, both seasonal and interannual patterns in subsurface layer water properties were remarkably similar at all sites. …

Distributions Of Euphausia Superba, Euphausia Crystallorophias, And Pleuragramma Antarcticum With Correlations To Environmental Variables In The Western Ross Sea, Antarctica, Linnea Brynn Davis

OES Theses and Dissertations

Antarctic krill (Euphausia superba), crystal krill (Euphausia crystallorophias), and Antarctic silverfish (Pleuragramma antarcticum) are key mid-trophic level species in the Ross Sea food web that provide connectivity between primary production and the upper trophic levels. Distributions of these species were constructed from net-based and acoustic observations collected in the western Ross Sea from 1988-2004. Distributions of environmental conditions in the Ross Sea were obtained from a high-resolution circulation model (temperature, mixed layer depth, surface speed) and satellite-derived observations (chlorophyll, sea ice cover). These distributions were analyzed with a range of statistical methods to determine …

Potential Impacts Of Climate Change On Photochemistry Of Zostera Marina L., Billur Celebi

OES Theses and Dissertations

Seagrasses account for approximately 10% of the ocean’s total carbon storage, although photosynthesis of seagrasses is carbon limited at today’s oceanic pH. Therefore, increasing atmospheric CO₂ concentration, which results in ocean acidification/carbonation, is predicted to have a positive impact on seagrass productivity. Previous studies have confirmed the positive influence of increasing CO₂ on photosynthesis and survival of the temperate eelgrass Zostera marina L., but the acclimation of photoprotective mechanisms in this context has not been characterized. This study aimed to quantify the long-term impacts of ocean acidification on photochemical control mechanisms that promote photosynthesis while simultaneously protecting …

The Changshu Declaration On Wetlands, R. Eugene Turner, Jos T. A. Verhoeven, Ania Grobicki, Jenny Davis, Shuqing An

Faculty Publications

No abstract provided.

Using Rare Earth Elements To Constrain Particulate Organic Carbon Flux In The East China Sea, Chin-Chang Hung, Ya-Feng Chen, Shih-Chieh Hsu, Kui Wang, Jianfang Chen, David J. Burdige

OES Faculty Publications

Fluxes of particulate organic carbon (POC) in the East China Sea (ECS) have been reported to decrease from the inner continental shelf towards the outer continental shelf. Recent research has shown that POC fluxes in the ECS may be overestimated due to active sediment resuspension. To better characterize the effect of sediment resuspension on particle fluxes in the ECS, rare earth elements (REEs) and organic carbon (OC) were used in separate two-member mixing models to evaluate trap-collected POC fluxes. The ratio of resuspended particles from sediments to total trap-collected particles in the ECS ranged from 82-94% using the OC mixing …

Why Was There A Harmful Algal Bloom In 2015: The Relative Growth Of Toxic And Non-Toxic Diatoms As A Function Of Temperature, Ariana M. Jensen, Meagan P. Beley-Finnemore, Christopher E. Ikeda, William P. Cochlan

STAR Program Research Presentations

A coastwide bloom of the toxigenic diatom Pseudo-nitzschia in 2015 resulted in the largest recorded outbreak and unprecedented levels of the neurotoxin, domoic acid (DA), along the North American west coast. The scientific community has suggested that warmer ocean temperatures were the main cause of this harmful algal bloom (HAB), but little scientific evidence to support the relationship between temperature, and the growth and toxicity of Pseudo-nitzschia has been provided for local isolates of these diatoms. To gain insight into bloom dynamics, a laboratory study was conducted to examine the growth of toxic and non-toxic phytoplankton species at a range …