Data Science Commons^™

Applications Of Machine Learning To Facilitate Software Engineering And Scientific Computing, Natalie Best

Computational and Data Sciences (PhD) Dissertations

The use of machine learning has risen in recent years, though many areas remain unexplored due to lack of data or lack of computational tools. This dissertation explores machine learning approaches in case studies involving image classification and natural language processing. In addition, a software library in the form of two-way bridge connecting deep learning models in Keras with ones available in the Fortran programming language is also presented.

In Chapter 2, we explore the applicability of transfer learning utilizing models pre-trained on non-software engineering data applied to the problem of classifying software unified modeling language diagrams where data is …

Machine Learning And Bioinformatic Insights Into Key Enzymes For A Bio-Based Circular Economy, Japheth E. Gado

Theses and Dissertations--Chemical and Materials Engineering

The world is presently faced with a sustainability crisis; it is becoming increasingly difficult to meet the energy and material needs of a growing global population without depleting and polluting our planet. Greenhouse gases released from the continuous combustion of fossil fuels engender accelerated climate change, and plastic waste accumulates in the environment. There is need for a circular economy, where energy and materials are renewably derived from waste items, rather than by consuming limited resources. Deconstruction of the recalcitrant linkages in natural and synthetic polymers is crucial for a circular economy, as deconstructed monomers can be used to manufacture …

Statistical Approaches For Estimation And Comparison Of Brain Functional Connectivity, Jifang Zhao

Theses and Dissertations

Drug addiction can lead to many health-related problems and social concerns. Functional connectivity obtained from functional magnetic resonance imaging (fMRI) data promotes a variety of fundamental understandings in such association. Due to its complex correlation structure and large dimensionality, the modeling and analysis of the functional connectivity from neuroimage are challenging. By proposing a spatio-temporal model for multi-subject neuroimage data, we incorporate voxel-level spatio-temporal dependencies of whole-brain measurements to improve the accuracy of statistical inference. To tackle large-scale spatio-temporal neuroimage data, we develop a computationally efficient algorithm to estimate the parameters. Our method is used to identify functional connectivity and …

Proposed Data Governance Framework For Small And Medium Scale Enterprises (Smes), Rejoice Okoro

All Graduate Theses, Dissertations, and Other Capstone Projects

Data governance is not a one size fits all, instead, it should be an evolutionary process that can be started small and measurable along the way. This research aims at proposing a data governance framework by ensuring data management processes, data security and control are compliant with laws and policies. This article also presents the first results of a comparative analysis between three data privacy laws and outlines five components which together form a data governance framework for SMEs. The data governance model documents data quality roles and their type of interaction with data quality management activities exploring how data …

Modelling Acoustics In Ancient Maya Cities: Moving Towards A Synesthetic Experience Using Gis & 3d Simulation, Graham Goodwin, Heather Richards-Rissetto

Department of Anthropology: Faculty Publications

Archaeological analyses have successfully employed 2D and 3D tools to measure vision and movement within cityscapes; however, built environments are often designed to invoke synesthetic experiences. GIS and Virtual Reality (VR) now enable archaeologists to also measure the acoustics of ancient spaces. To move toward an understanding of synesthetic experience in ancient Maya cities, we employ GIS and 3D modelling to measure sound propagation and reverberation using the main civic-ceremonial complex in ancient Copán as a case study. For the ancient Maya, sight and sound worked in concert to create ritually-charged atmospheres and architecture served to shape these experiences. Together …

Semantics Of The Black-Box: Can Knowledge Graphs Help Make Deep Learning Systems More Interpretable And Explainable?, Manas Gaur, Keyur Faldu, Amit Sheth

Publications

The recent series of innovations in deep learning (DL) have shown enormous potential to impact individuals and society, both positively and negatively. The DL models utilizing massive computing power and enormous datasets have significantly outperformed prior historical benchmarks on increasingly difficult, well-defined research tasks across technology domains such as computer vision, natural language processing, signal processing, and human-computer interactions. However, the Black-Box nature of DL models and their over-reliance on massive amounts of data condensed into labels and dense representations poses challenges for interpretability and explainability of the system. Furthermore, DLs have not yet been proven in their ability to …

A Hybrid Gene Selection Strategy Based On Fisher And Ant Colony Optimization Algorithm For Breast Cancer Classification, Mohammed Hamim, Ismail El Moudden, Mohan D. Pant, Hicham Moutachaouik, Mustapha Hain

EVMS School of Health Professions Faculty Publications

Breast cancer poses the greatest threat to human life and especially to women's life. Despite the progress made in data mining technology in recent years, the ability to predict and diagnose such fatal diseases based on gene expression data still reveals a limited prediction performance, which may not be surprising since most of the genes in expression data are believed to be irrelevant or redundant. The dimensionality reduction process may be considered as a crucial step to analyze gene expression data, as it can reduce the high dimensionality of the breast cancer datasets, which may result into a better prediction …

Forecasting The Daily Percentage Of Delayed Flights Based On The National Weather Data, Parto Mahmoudi

Graduate Student Theses, Dissertations, & Professional Papers

Flight delays cost airlines and affect passenger’s satisfaction. In this research work, we predicted the daily percentage of delayed flights based on the national weather data using the multiple linear regression and the random forest models. We extracted the passenger flight on-time performance data from the Bureau of Transportation Statistics and the weather dataset from NOAA National Centers for Environmental Information for the years from 2015 to 2019. We used the flight dataset for Seattle airport as the origin. We predicted the daily percentage of delayed flights for the Seattle-originated flights based on the features such as weather conditions of …

Convolutional Audio Source Separation Applied To Drum Signal Separation, Marius Orehovschi

Honors Theses

This study examined the task of drum signal separation from full music mixes via both classical methods (Independent Component Analysis) and a combination of Time-Frequency Binary Masking and Convolutional Neural Networks. The results indicate that classical methods relying on predefined computations do not achieve any meaningful results, while convolutional neural networks can achieve imperfect but musically useful results. Furthermore, neural network performance can be improved by data augmentation via transposition – a technique that can only be applied in the context of drum signal separation.

Information Architecture For A Chemical Modeling Knowledge Graph, Adam R. Luxon

Theses and Dissertations

Machine learning models for chemical property predictions are high dimension design challenges spanning multiple disciplines. Free and open-source software libraries have streamlined the model implementation process, but the design complexity remains. In order better navigate and understand the machine learning design space, model information needs to be organized and contextualized. In this work, instances of chemical property models and their associated parameters were stored in a Neo4j property graph database. Machine learning model instances were created with permutations of dataset, learning algorithm, molecular featurization, data scaling, data splitting, hyperparameters, and hyperparameter optimization techniques. The resulting graph contains over 83,000 nodes …

Reliable And Interpretable Machine Learning For Modeling Physical And Cyber Systems, Daniel L. Marino Lizarazo

Theses and Dissertations

Over the past decade, Machine Learning (ML) research has predominantly focused on building extremely complex models in order to improve predictive performance. The idea was that performance can be improved by adding complexity to the models. This approach proved to be successful in creating models that can approximate highly complex relationships while taking advantage of large datasets. However, this approach led to extremely complex black-box models that lack reliability and are difficult to interpret. By lack of reliability, we specifically refer to the lack of consistent (unpredictable) behavior in situations outside the training data. Lack of interpretability refers to the …

Use Of Lymesim 2.0 To Assess The Potential For Single And Integrated Management Methods To Control Blacklegged Ticks (Ixodes Scapularis; Acari: Ixodidae) And Transmission Of Lyme Disease Spirochetes, Shravani Chitineni, Elizabeth R. Gleim, Holly D. Gaff

Undergraduate Honors Theses

Annual Lyme disease cases continue to rise in the U.S. making it the most reported vector-borne illness in the country. The pathogen (Borrelia burgdorferi) and primary vector (Ixodes scapularis; blacklegged tick) dynamics of Lyme disease are complicated by the multitude of vertebrate hosts and varying environmental factors, making models an ideal tool for exploring disease dynamics in a time- and cost-effective way. In the current study, LYMESIM 2.0, a mechanistic model, was used to explore the effectiveness of three commonly used tick control methods: habitat-targeted acaricide (spraying), rodent-targeted acaricide (bait boxes), and white-tailed deer targeted acaricide (4-poster …

Maritime Surveillance In The Gulf Of Suez : Identifying Opportunities For Future Improvements, Esslam Hassan, Dimitrios Dalaklis

Conference Papers

The Gulf of Suez (GOS) is one of the most important waterways in the world. Furthermore, issues like maritime safety, avoidance of accidents and effective conduct of navigation, as well as protection of the marine environment in the GOS are always among the highest priorities of Egyptian legislators. As a result, maritime surveillance in the area under discussion is facilitated by a technologically advanced Vessel Traffic Management System (VTMS) that has been established by the competent authority as a cost-effective measure to reduce and mitigate risks in accordance with international standards and guidelines. The main aim of this paper is …

Big Data Management In The Shipping Industry : Examining Strengths Vs Weaknesses And Highlighting Relevant Business Opportunities, Dimitrios Dalaklis, Georgios Vaitsos, Nikitas Nikitakos, Dimitrios Papachristos, Angelo Dalaklis, Esslam Hassan

Conference Papers

History testifies that there is a dialectic relationship between humans and technology. Especially during the last couple of decades, the shipping industry has benefitted from a very extended number of advanced technology innovations. Today, all systems supporting the conduct of navigation and the various information technology (IT) applications related to ship management activities are heavily reliant upon (almost) real-time information to safely/effectively fulfil their allocated tasks. As a result, truly vast quantities of data -which are often described as “Big Data” in the wider literature- are created and the issue of how to effectively manage all the associated information is …

Assessing And Forecasting Chlorophyll Abundances In Minnesota Lake Using Remote Sensing And Statistical Approaches, Ben Von Korff

All Graduate Theses, Dissertations, and Other Capstone Projects

Harmful algae blooms (HABs) can negatively impact water quality, lake aesthetics, and can harm human and animal health. However, monitoring for HABs is rare in Minnesota. Detecting blooms which can vary spatially and may only be present briefly is challenging, so expanding monitoring in Minnesota would require the use of new and cost efficient technologies. Unmanned aerial vehicles (UAVs) were used for bloom mapping using RGB and near-infrared imagery. Real time monitoring was conducted in Bass Lake, in Faribault County, MN using trail cameras. Time series forecasting was conducted with high frequency chlorophyll-a data from a water quality sonde. Normalized …

Public Interest Technology – Exploring Covid-19 Health Data, Sarah Zelikovitz

Open Educational Resources

This module is part of a Introduction to Data Science course that covers the different parts of the data science process: data acquisition, cleaning, exploratory data analysis, and modeling. The COVID-19 pandemic has created much interest in public health data, as well as interest in visualization of all types of data. Public health data has a set of challenges that is unique to health data, with HIPAA laws, and real time collection of data. With COVID-19, the challenges are particularly amplified, as data collection and statistics collected are constantly changing in response to feedback from labs, hospitals, drug companies, and …

Question Answering By Bert, Suman Karanjit

Student Academic Conference

No abstract provided.

Neither “Post-War” Nor Post-Pregnancy Paranoia: How America’S War On Drugs Continues To Perpetuate Disparate Incarceration Outcomes For Pregnant, Substance-Involved Offenders, Becca S. Zimmerman

Pitzer Senior Theses

This thesis investigates the unique interactions between pregnancy, substance involvement, and race as they relate to the War on Drugs and the hyper-incarceration of women. Using ordinary least square regression analyses and data from the Bureau of Justice Statistics’ 2016 Survey of Prison Inmates, I examine if (and how) pregnancy status, drug use, race, and their interactions influence two length of incarceration outcomes: sentence length and amount of time spent in jail between arrest and imprisonment. The results collectively indicate that pregnancy decreases length of incarceration outcomes for those offenders who are not substance-involved but not evenhandedly -- benefitting white …

Multi-Stream Longitudinal Data Analysis Using Deep Learning, Sajjad Fouladvand

Theses and Dissertations--Computer Science

Longitudinal healthcare data encompasses all tasks where patients information are collected at multiple follow-up times. Analyzing this data is critical in addressing many real world problems in healthcare such as disease prediction and prevention. In this thesis, technical challenges in analyzing longitudinal administrative claims data are addressed and novel deep learning based models are proposed for multi-stream data analysis and disease prediction tasks. These algorithms and frameworks are assessed mainly on substance use disorders prediction tasks and specifically designed to tackled these disorders. Substance use disorder is a public health crisis costing the US an estimated $740 billion annually in …

Dimension Reduction Techniques In Regression, Pei Wang

Theses and Dissertations--Statistics

Because of the advances of modern technology, the size of the collected data nowadays is larger and the structure is more complex. To deal with such kinds of data, sufficient dimension reduction (SDR) and reduced rank (RR) regression are two powerful tools. This dissertation focuses on these two tools and it is composed of three projects. In the first project, we introduce a new SDR method through a novel approach of feature filter to recover the central mean subspace exhaustively along with a method to determine the dimension, two variable selection methods, and extensions to multivariate response and large p …

Fast And Memory-Efficient Tfidf Calculation For Text Analysis Of Large Datasets, Samah Senbel

School of Computer Science & Engineering Faculty Publications

Term frequency – Inverse Document Frequency (TFIDF) is a vital first step in text analytics for information retrieval and machine learning applications. It is a memory-intensive and complex task due to the need to create and process a large sparse matrix of term frequencies, with the documents as rows and the term as columns and populate it with the term frequency of each word in each document.

The standard method of storing the sparse array is the “Compressed Sparse Row” (CSR), which stores the sparse array as three one-dimensional arrays for the row id, column id, and term frequencies. We …

Neural Representations Of Concepts And Texts For Biomedical Information Retrieval, Jiho Noh

Theses and Dissertations--Computer Science

Information retrieval (IR) methods are an indispensable tool in the current landscape of exponentially increasing textual data, especially on the Web. A typical IR task involves fetching and ranking a set of documents (from a large corpus) in terms of relevance to a user's query, which is often expressed as a short phrase. IR methods are the backbone of modern search engines where additional system-level aspects including fault tolerance, scale, user interfaces, and session maintenance are also addressed. In addition to fetching documents, modern search systems may also identify snippets within the documents that are potentially most relevant to the …

Revisiting Absolute Pose Regression, Hunter Blanton

Theses and Dissertations--Computer Science

Images provide direct evidence for the position and orientation of the camera in space, known as camera pose. Traditionally, the problem of estimating the camera pose requires reference data for determining image correspondence and leveraging geometric relationships between features in the image. Recent advances in deep learning have led to a new class of methods that regress the pose directly from a single image.

This thesis proposes methods for absolute camera pose regression. Absolute pose regression estimates the pose of a camera from a single image as the output of a fixed computation pipeline. These methods have many practical benefits …

Requirements Engineering Education Slr Data Set 1988-2020, Marian Daun, Alicia M. Grubb, Bastian Tenbergen

Data

Requirements Engineering (RE) has established itself as a core software engineering discipline. It is well acknowledged that good RE leads to higher quality software and considerably reduces the risk of failure or exceeding budgets of software development projects. Therefore, it is of vital importance to train future software engineers in RE and educate future requirements engineers to adequately manage requirements in various projects. However, to date there exists no central dataset for RE Education articles. To lay the foundation for this important mission, we conducted a systematic literature review. In this dataset, we present 152 articles from the Requirements Engineering …

Reading Datasets: Strategies For Interpreting The Politics Of Data Signification, Lindsay Poirier

Statistical and Data Sciences: Faculty Publications

All datasets emerge from and are enmeshed in power-laden semiotic systems. While emerging data ethics curriculum is supporting data science students in identifying data biases and their consequences, critical attention to the cultural histories and vested interests animating data semantics is needed to elucidate the assumptions and political commitments on which data rest, along with the externalities they produce. In this article, I introduce three modes of reading that can be engaged when studying datasets—a denotative reading (extrapolating the literal meaning of values in a dataset), a connotative reading (tracing the socio-political provenance of data semantics), and a deconstructive reading …

"Who Can Help Me?'': Knowledge Infused Matching Of Support Seekers And Support Providers During Covid-19 On Reddit, Manas Gaur, Kaushik Roy, Aditya Sharma, Biplav Srivastava, Amit Sheth

Publications

During the ongoing COVID-19 crisis, subreddits on Reddit, such as r/Coronavirus saw a rapid growth in user's requests for help (support seekers - SSs) including individuals with varying professions and experiences with diverse perspectives on care (support providers - SPs). Currently, knowledgeable human moderators match an SS with a user with relevant experience, i.e, an SP on these subreddits. This unscalable process defers timely care. We present a medical knowledge-infused approach to efficient matching of SS and SPs validated by experts for the users affected by anxiety and depression, in the context of with COVID-19. After matching, each SP to …

Uncovering Object Categories In Infant Views, Naiti S. Bhatt

Scripps Senior Theses

While adults recognize objects in a near-instant, infants must learn how to categorize the objects in their visual environments. Recent work has shown that egocentric head-mounted camera videos contain rich data that illuminate the infant experience (Clerkin et al., 2017; Franchak et al., 2011; Yoshida & Smith, 2008). While past work has focused on the social information in view, in this work, we aim to characterize the objects in infants’ at-home visual environments by modifying modern computer vision models for the infant view. To do so, we collected manual annotations of objects that infants seemed to be interacting within a …

Improving Space Efficiency Of Deep Neural Networks, Aliakbar Panahi

Theses and Dissertations

Language models employ a very large number of trainable parameters. Despite being highly overparameterized, these networks often achieve good out-of-sample test performance on the original task and easily fine-tune to related tasks. Recent observations involving, for example, intrinsic dimension of the objective landscape and the lottery ticket hypothesis, indicate that often training actively involves only a small fraction of the parameter space. Thus, a question remains how large a parameter space needs to be in the first place — the evidence from recent work on model compression, parameter sharing, factorized representations, and knowledge distillation increasingly shows that models can be …

Full Interpretable Machine Learning Method With In-Line Coordinates, Hoang Phan

All Master's Theses

This thesis explores a new approach for machine learning classification task in 2-dimensional space (2-D ML) with In-line Coordinates. This is a full machine learning approach that does not require to deal with n-dimensional data in n-dimensional space. In-line coordinates method allows discovering n-D patterns in 2-D space without loss of n-D information using graph representation of n-D data in 2-D. Specifically, this thesis shows that it can be done with In-line Based Coordinates in different modifications, which are defined, including static and dynamic ones. Some classification and regression algorithms based on these In-line Coordinates were explored. Two successful cases …

Automatic Hierarchy Expansion For Improved Structure And Chord Evaluation, Katherine M. Kinnaird, Brian Mcfee

Statistical and Data Sciences: Faculty Publications

No abstract provided.