Data Science Commons^™

Federated Learning For Early Medical Diagnosis: Enhanced Diabetic Retinopathy Detection In Smart Healthcare, Mohammad Nasajpour Esfahani

Master's Theses

This thesis investigates the role of federated learning as a privacy-preserving solution for modern healthcare challenges. In traditional machine learning, sensitive medical data must be centralized for model training, raising concerns about privacy, security, and regulatory compliance. Federated learning offers an alternative by allowing hospitals, clinics, and personal health devices to collaboratively train shared models without exchanging raw patient data. The study first explores how federated learning is being used across various healthcare domains, including cancer detection, medical imaging, and disease prediction— highlighting its potential to support secure collaboration across institutions. It addresses key benefits such as data privacy, scalability, …

Unifying And Expanding Global And Local Variable Importance Methods For Explainable Machine Learning, Kelvyn K. Bladen

All Graduate Theses and Dissertations, Fall 2023 to Present

Machine learning methods are powerful analytical tools used across all scientific disciplines and many other fields of investigation for prediction and inference from diverse data sources. Despite their broad applicability, machine learning methods are often highly complex and difficult to interpret. Developing a greater understanding of which variables most influence a response is essential for increasing the interpretability of these models and supporting informed decision-making. This research focuses on improving how we evaluate the importance of these variables.

One common approach is to shuffle the values of a variable and see how much the model accuracy gets worse. Another approach …

Causal Discovery In Photospheric Magnetic Field Time Series For Interpretable Solar Flare Prediction, Nathan W. Nelson

All Graduate Theses and Dissertations, Fall 2023 to Present

Solar flares are capable of damaging many valuable resources, including satellites, power grids, and even human lives. Being able to predict solar flares can allow for proactive measures to be taken that can prevent that damage. Many new deep learning methods for predicting solar flares have shown promise in this task, but the decisions they make are harder to explain to humans. This makes understanding why these models make mistakes difficult, which in turn makes fixing and maintaining them more challenging. We test a recent deep learning method that helps discover relationships between different measurements of the Sun as they …

A Data-Driven Nutrient Density Scoring Framework For Beef Using Principal Component Analysis, Teja Vuppala

All Graduate Theses and Dissertations, Fall 2023 to Present

Beef is one of the most nutrient-rich foods in the human diet, providing high-quality protein, iron, omega-3 fatty acids, B vitamins, and a wide range of other compounds important to health. However, current nutrition scoring systems used on food labels were designed to compare different foods to one another — for example, beef versus broccoli — and do not work well for judging the nutritional quality of different beef samples relative to each other. A grass-fed steak and a conventionally-finished steak can carry nearly identical Nutrition Facts panels while differing substantially in their content of omega-3 fatty acids, vitamins, and …

Machine Learning For Predictive Energy And Emissions Modeling Of Vehicles And Power Grids In The United States, S M Tanvir Faysal Alam Chowdhoury

Dissertations

The environmental benefits of electric vehicle (EV) adoption depend on more than replacing internal combustion engine vehicles with electric powertrains. EV adoption reshapes electricity demand, interacts with regional generation mixes, and influences travel behavior and congestion, creating a coupled transportation-energy system in which vehicle and power-plant emissions must be evaluated together. This dissertation develops machine-learning frameworks for predicting energy consumption and emissions from vehicles and power grids under rising EV adoption. The first component forecasts grid emissions from EV charging. Using simulation data from NREL's Cambium database, a Prophet-based time-series framework predicts carbon dioxide, nitrous oxide, and methane emission rates …

Predicting Student Belonging In Computing Education: A Multimodal Machine Learning Approach Using Eeg And Survey Data, Hannah Moshtaghi

Master's Theses

Measuring students’ sense of belonging, characterized by feelings of acceptance, inclusion, and encouragement from teachers, remains a significant challenge in computing education. Prior research has associated this multidimensional construct with positive academic outcomes and has identified instructors’ growth- and fixed-mindset messaging as a potential influence. However, belonging is a complex and deeply personal experience that is difficult to capture through direct observation alone. Current measurement methods rely on self-report surveys, which may not capture every aspect of an experience that can also involve emotional and cognitive responses.

This thesis investigates whether combining EEG data recorded during a belonging questionnaire with …

Evaluating Machine Learning Models On Classification Of Novel Cyber Attacks In The Healthcare Domain, Promise Ehimen

Dissertations, Theses, and Projects

The increasing adoption of the Internet of Medical Things (IoMT) has improved healthcare delivery through connected medical devices while simultaneously expanding the cybersecurity risks facing healthcare organizations. Although machine learning based intrusion detection systems have demonstrated high detection accuracy, their ability to respond reliably to previously unseen cyberattacks remains uncertain. This study investigated how a Neural Network model and a Logistic Regression model classified novel cyberattacks within the IoMT environment. The Neural Network and Logistic Regression models were both trained and tested using a subset of the CICIoMT2024 benchmark dataset. The Neural Network achieved 99.82% test accuracy and a 0.94 …

Information Theory Analysis Of Water Vapor Stable Isotopes From The Sail Campaign, Matthew John Rybecky

Earth and Planetary Sciences ETDs

Understanding the processes that control water vapor isotopic composition in mountain environ- ments is essential for interpreting isotope records and predicting water resource responses to cli- mate change. This thesis applies information theory to continuous, high-resolution water vapor stable isotope measurements from the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in the East River watershed of Colorado’s Upper Gunnison Basin, spanning the winter- to-spring transition of 2022–2023. The analysis employs Shannon entropy, mutual information, transfer entropy, and joint transfer en- tropy (JTE) to quantify how environmental variables, including surface meteorology, radiation, tur- bulent fluxes, and ERA5 reanalysis products, transfer information …

Cdt-1d Cnn Integration With Simpson-Sobolev Regularization For High-Frequency Options Trading: With Fem-Based Heston Option Pricing, Daniel M. Margolis, Johannes Tausch, Arthur K. Selender

Mathematics Theses and Dissertations

This dissertation presents a computational framework for high-frequency options trading that combines Cross-Data-Type 1-D Convolutional Neural Networks (CDT-1D CNN) with Simpson-Sobolev regularization for directional prediction, and finite element methods (FEM) for realistic option pricing during backtesting. The core innovation lies in developing a mathematically rigorous regularization approach that maintains the adaptability of modern deep learning while enabling accurate evaluation through stochastic volatility models. The primary contribution is the Simpson-Sobolev regularization scheme, which extends traditional Sobolev regularization by incorporating Simpson’s rule for numerical integration. This approach achieves higher-order accuracy in approximating the Sobolev norms that control function smoothness. Simpson’s rule attains …

Mycelial Modeling: Teaching Biology Students Statistical Modeling With Mushrooms, Colette Wolf

University Honors Theses

This paper summarizes and describes the development of a set of learning materials that were created to educate students and professionals from other fields in statistical modeling techniques. These materials are primarily aimed at biology students, but are still intended to be useful for anyone who is interested in incorporating decision trees and random forest models into their personal research in the future. By directing the reader towards the JMP software, these materials navigate around the statistical knowledge base and coding implementation practices that otherwise would serve as a barrier to learning statistical modeling techniques, and instead focus on the …

Pitching Fwar Vs Bwar As Predictors Of Team Success In The Mlb Regular Season, Jason Lee

University Honors Theses

Pitching Wins Above Replacement (WAR) is an area of sabermetrics capable of being used to predict regular season success in Major League Baseball. Fangraphs WAR (fWAR) and Baseball Reference WAR (bWAR) were used to construct regression models to predict regular season winning percentage, to build logistic models to establish a relationship between pitching WAR and the probability to win an individual regular season game, and to overlay density plots to consider WAR accumulation by pitching role and observe the difference of impact between starter and relief pitchers. This research finds that while pitching fWAR and pitching bWAR are both statistically …

A Novel, Embedding-Based Approach To Longitudinal Survey Data Imputation, Julia Rezvani

University Honors Theses

Longitudinal surveys are ubiquitous in the social sciences as a means of tracking changes in behavior and opinions with time and identifying potential causal mechanisms. These surveys are frequently plagued by missing data and semantic drift, both of which limit their effectiveness and scientific utility. Imputation algorithms allow researchers to fill gaps in collected survey datasets, imperfectly reconstructing lost data. Although deep learning algorithms have been used in imputation to great success, approaches which simultaneously leverage the semantic and temporal structure of longitudinal surveys have not yet been developed. We propose a novel imputation architecture which is capable of leveraging …

Developing A Humpback Whale Vocalization Detector Using Machine Learning Models, Lucas Kantorowski

Master's Theses

Humpback whale songs are notoriously complex. Identification of humpback whale song units requires bioacousticians to tediously listen, analyze, and annotate collected sound data. Even sparse data requires listening to the entirety of the collected acoustic data. In this study, three hours of audio containing over one-thousand humpback whale song units was collected in Monterey Bay, California.

Prior studies have seen success using convolutional neural networks by performing image classification on hundreds of hours worth of spectrograms. Our study uses traditional machine learning models, as they are less computationally demanding, and require less data.

We use time splitting and Mel-frequency cepstrum …

Determining K Clusters In K-Means Clustering With The Crab Algorithm, Jasmine Kristine S. Cabrera

Master's Theses

Unsupervised clustering often faces the challenge of determining the correct number of clusters in the absence of a true target variable. Traditional methods such as the Elbow Method and the Silhouette Score can produce ambiguous results and rely on assumptions about cluster shape or separation. To address this, we created the Clustering Rivals and Buddies (CRAB) algorithm which evaluates clusters based on stability across multiple subsamples. CRAB uses pairwise classifications to identify points that consistently group together called “Buddies” and points that remain separated called “Rivals.” Applied with K-means, CRAB accurately recovers underlying cluster structures in both spherical and non-spherical …

The Security Of Llm-Generated Code, Christopher Brian Gonzalez Ayala

Student Theses

The rapid adoption of Large Language Models (LLMs) in software development has transformed coding practices by enabling automated code generation, completion, and optimization. Despite these advantages, concerns persist regarding the security and reliability of LLM-generated code. This study presents a comprehensive evaluation of both the functional correctness and security of code produced by three prominent LLMs as of early 2026. A total of 4,800 code snippets were generated using 100 security-focused programming prompts derived from the OWASP Top 10:2025, translated across eight natural languages and two phrasing styles (literal and natural developer-oriented prompts). To assess performance, a multi-stage experimental framework …

Identifying Textual Predictors Of Early Termination In Clinical Trials In Medicine: An Explainable Machine-Learning Study, Rohan Ramnarain

Dissertations, Theses, and Capstone Projects

About one in five clinical trials in medicine ends early, wasting valuable resources and reducing the evidence available for developing life-saving medical treatments. This project uses a method called Trial2Vec, which is a self-supervised machine-learning method that converts clinical trial documents into dense numerical representations that capture their key design and clinical characteristics, to turn each proposed clinical trial’s written protocol into a compact numerical profile (a process referred to as embedding). These profiles are then paired with a predictive machine learning models to identify the words and phrases in the trial documents that can signal a higher risk of …

Inductive Biases In Field-Level Cosmological Inference From Galaxy Catalogs, James O'Connor Baldwin

Dissertations, Theses, and Capstone Projects

We perform field-level likelihood-free inference of the matter density parameter Ωm from simulated galaxy catalogs using machine learning models with differing inductive biases. Using features extracted from hydrodynamic simulations in the CAMELS suite, we investigate how both observable choice and model architecture govern the extraction of cosmological information. We consider galaxy positions and line-of-sight peculiar velocities, both separately and in combination, and compare permutation-invariant Deep Sets, implemented with either standard multilayer perceptrons (MLPs) or Kolmogorov–Arnold Networks (KANs), to graph neural networks (GNNs) implemented with MLPs, which explicitly encode spatial relations. We evaluate inference performance under both in-distribution and out-of-distribution (OOD) …

Bridging Data Gaps In Retinal Imaging: From Structural Domain Adaptation To Topology-Aware Synthesis, Gözde Merve Demirci

Dissertations, Theses, and Capstone Projects

Comprehensive visualization of the retina is essential for diagnosing and monitoring blinding diseases such as Diabetic Retinopathy and Retinopathy of Prematurity (ROP), where pathological changes often extend beyond a single field of view. Despite significant advances in automated retinal image analysis, clinical deployment remains limited by two fundamental data gaps: a structural learning gap, arising from scarce expert annotations and poor generalization across imaging domains, and a spatial coverage gap, caused by the difficulty of acquiring multi-view retinal images in fragile populations. Although these challenges are often addressed independently, this dissertation argues that they are tightly coupled: accurate, …

Crab: A Novel Clustering Score Using Clustering With Rivals And Buddies For Unsupervised Learning, Allen Choi

Master's Theses

Unsupervised clustering algorithms today are used across a wide variety of fields such as biology, engineering, and industry in order to classify observations into groups where labels are not provided. This can provide important latent information regarding the observations within groups, as well as insight regarding the groups themselves. In order to judge the optimal number of clusters for an unsupervised clustering algorithm, many methods exist such as the Elbow Method and Silhouette Score; however, these methods come with drawbacks and are not necessarily flexible across many unsupervised methods. We present a novel clustering score framework relying on a resampling-based …

Edge Co-Occurrence Regularization For Node Classification, Kadir Altunel

Theses

We propose a simple yet effective regularization technique for node classification on graphs that leverages edge-based label co-occurrence patterns. We first train an MLP on node features to produce class probability distributions, then compute a fixed penalty matrix from edge-based co-occurrence statistics of these predictions. This penalty matrix, which captures unlikely class combinations on connected nodes, is then used to regularize GNN training without further updates. We evaluate this approach across multiple homophilic datasets (Cora, CiteSeer, PubMed, ogbn-arxiv) and heterophilic benchmarks (Chameleon, Squirrel, Actor, Roman-Empire) using three GNN architectures: GCN, GraphSAGE, and H2GCN. Results show consistent improvements on homophilic graphs, …

A Generative Ai-Driven Computational Framework For Industry-Scale Discovery Of Novel Battery Materials, Joy Datta

Dissertations

The growing demand for sustainable, high-energy-density electrochemical storage has motivated the exploration of multivalent-ion batteries based on earth-abundant elements such as aluminum, calcium, magnesium, and zinc. While multivalent charge carriers offer higher theoretical energy density than lithium, their practical deployment is hindered by sluggish ion transport, strong ion-host interactions, and structural degradation of electrode materials. Identifying host materials that can reversibly accommodate multivalent ions while maintaining structural integrity remains a fundamental challenge. The dissertation develops a scalable, end-to-end computational framework that integrates density functional theory (DFT), machine learning (ML), and generative artificial intelligence (GenAI) to accelerate the discovery of next-generation …

Toward Learning-Based Reconstruction And Part Decomposition Of Man-Made 3d Geometry: Neural Implicit Representations And Scalable Supervision, Shen Fan

Dissertations

Digital three-dimensional (3D) models are central to engineering design, analysis, and manufacturing, but learning pipelines for man-made geometry often operate on sampled carriers that do not preserve all of the structure present in exact CAD representations. This dissertation studies learning-based reconstruction and part decomposition for structured man-made 3D geometry, from general object benchmarks to CAD-derived datasets, with a focus on neural implicit representations trained from signed-distance samples, point clouds, and tessellated meshes. The goal is to make these models more accurate, more part-aware, and more consistently supervised.

First, signed distance function (SDF) reconstruction with implicit neural representations is improved through …

Transportation Deserts And Structural Mobility Access In New York City, John Cruz

Student Theses

This study examines structural mobility access across New York City census tracts by constructing a tract-level Mobility Access Index (MAI) that integrates employment accessibility, hospital accessibility, and first-mile subway walking burden using MTA GTFS transit data, NYC Taxi and Limousine Commission trip records, and US Census American Community Survey demographic estimates. Three OLS regression models, supplemented by Lasso, Elastic Net, and Random Forest specifications, test whether structural access gaps are associated with short-distance connector trip intensity and per-worker connector cost burden. Results show that MAI varies substantially across tracts, with high access concentrated in Manhattan and along major subway corridors. …

Forecasting Interborough Express Ridership Using Network-Based Station Typologies And Direct Demand Models, Fomba Kassoh

Student Theses

Forecasting ridership for new transit infrastructure is difficult in the absence of observed outcomes, particularly under domain shift between an existing system and a proposed corridor. This study develops a station-level direct demand modeling (DDM) framework to forecast average weekday ridership for the proposed Interborough Express (IBX) in New York City — a 14-mile circumferential rapid transit corridor connecting Brooklyn and Queens. The approach pairs unsupervised learning with supervised estimation in a common feature space defined by transit service, accessibility, and built-environment characteristics. K-means clustering identifies latent station typologies (node–place regimes), and IBX stations are projected into this topology to …

Evaluating Soil Health And Crop Yield In Louisiana Agricultural Systems: Impacts Of Best Management Practices And Prediction Models, Hector J. Mendoza Lagos

LSU Doctoral Dissertations

The adoption of conservation management practices is critical for improving soil health, enhancing nutrient use efficiency, and sustaining crop productivity in row crop systems in Louisiana. This study evaluated the role of conservation agronomic practices, soil biochemical indicators, and machine learning predictive models to improve soil nutrient dynamics, soil health indicators, microbial communities (MC), and crop productivity on a corn (Zea mays L.) research plot scale and in a commercial forty-hectare cotton (Gassypium hirsutum L.)-corn-soybean (Glycine max L.) rotation system in northeast Louisiana. The objectives of the study were to evaluate soil nutrient dynamics and MCs under …

Material Costs, Karima Weinman

Masters Theses

This thesis investigates how migration fatality and disappearance data can be reinterpreted through material craft to create a more reflective encounter with information. Working with the Missing Migrants Project's dataset, this project asks how design can communicate dimensions of human loss that conventional data visualization cannot reach.

The work situates contemporary border violence within a longer colonial history, arguing that the logics of surveillance and quantification that structured European imperial expansion persist in the databases that govern mobility in the Mediterranean today.

Terrazzo is a 15th-century Venetian flooring technique built from discarded fragments bound together into a unified surface. This …

An Analytical Framework For Quantifying Urban And Community Resilience To Natural Hazards From Cell-Phone Gps-Location And Traffic-Flow Data, Georgios Chatzikyriakidis

Civil and Environmental Engineering Theses and Dissertations

Urban areas are increasingly exposed to natural hazards while accommodating a growing share of the global population, yet a consistent science-based framework for quantifying urban and community resilience remains lacking. This dissertation develops a physics-based analytical framework grounded in statistical mechanics and the quantitative theory of Brownian motion. A city is conceptualized as a complex medium in which citizens move analogously to Brownian particles within a viscoelastic environment, influenced by socioeconomic interactions and infrastructure functionality.

A central premise is that urban resilience, interpreted as engineering resilience (an outcome), can be quantified through a single metric: the mean-square displacement MSD=⟨r²(t)⟩, of …

Bayesian Spatiotemporal Model For Counterfactual Estimation In Socioeconomic Studies, Duwani W. Gonzalez

Statistical Science Theses and Dissertations

Impact evaluations of regional development programs often require estimating counterfactual outcomes for a small number of treated regions using survey-based areal data. In practice, evaluators typically rely on two-group quasi-experimental methods such as propensity score matching (PSM) and Difference-in-Differences (DiD). These approaches perform poorly when only a few regions receive treatment, and when the set of observed covariates is limited or only partially relevant. Moreover, they typically do not explicitly exploit the spatial and temporal dependence present in survey-based areal data such as in ACS (American Community Survey). This dissertation develops a family of Bayesian spatial predictive models for directly …

Dynamic Trust Calibration, Bruno Miranda Henrique

Dartmouth College Ph.D Dissertations

Trust calibration between humans and Artificial Intelligence (AI) is crucial for optimal decision-making in collaborative settings. Excessive trust can lead users to accept AI-generated outputs without question, overlooking critical flaws, while insufficient trust may result in disregarding valuable insights from AI systems, hindering performance. Despite its importance, there is currently no definitive and objective method for measuring trust calibration between humans and AI. Current approaches lack standardization and consistent metrics that can be broadly applied across various contexts, and they don’t distinguish between the formation of opinions and subsequent human decisions. This thesis brings a novel and objective method for …

A Mathematical & Computational Study Of Voting Power In Social Choice Systems, Madison T. Gambon

Undergraduate Honors Theses

This thesis develops a computational framework for measuring the vulnerability of voting rules to coordinated strategic manipulation. While classical results show that most voting systems are theoretically manipulable, less is known about the magnitude of coordination required to alter outcomes or how that magnitude varies across institutional designs. I define the minimal manipulating coalition size k* as the smallest number of voters whose strategic ballot changes can overturn a sincere election outcome under a given rule. To enable cross-election comparison, I introduce the normalized manipulation threshold θ = k*/n . Using algorithmic search procedures and Monte Carlo simulation, I estimate …