Data Science Commons^™

Individualized Bayesian Inference Identifies Novel Genetic Variants For Parkinson's Disease, Jin Ren, Yasaman J. Soofi, Md Asad Rahman, Qing Lu, Jinling Liu

Engineering Management and Systems Engineering Faculty Research & Creative Works

Parkinson's disease (PD) is a complex neurodegenerative disorder with a significant genetic component. While genome-wide association studies (GWAS) have been instrumental in identifying genetic variants associated with PD, the reliance on large sample sizes and population-level analyses may overlook variants with lower minor allele frequencies or individual-specific relevance. Individualized Bayesian Inference (IBI) offers a promising method to complement GWAS by identifying and prioritizing candidate genetic markers at both the individual and patients-like-me subgroup levels. This study evaluates the application of IBI to PD genetics, using GWAS as a baseline for comparison. We analyzed genetic data from the Fox Insight online …

Ecu-Malnett V2, Matthew G. Gaber, Mohiuddin Ahmed, Michael N. Johnstone

Research Datasets

ECU-MALNETT (ECU MALware NETwork Traffic) is a real world, reproducible dataset of labeled benign and malicious network flows built from the Peekaboo execution corpus. Peekaboo runs evasive malware with dynamic binary instrumentation and records raw host-level PCAPs while granting full Internet access, yielding noisy, real-world captures with background OS activity and concurrent processes. To derive trustworthy labels from these traces, we apply Construct, a baseline aware, zero-trust labeling framework. Construct first ingests a baseline capture to establish reference sets (DNS qnames, HTTP hosts, TLS SNIs, and socket endpoints) and grows a conservative benign IP pool only via whitelisted DNS resolutions. …

The Self-Aware Room: A Framework For Operational Self-Awareness In Evolvable Blended Environments, David B. Smith

Publications and Research

The Self-Aware Room (SAR) is a room-scale research environment developed within the larger Balanced Blended Space and Blended Reality Performance System research trajectory. Rather than treating the room as a conventional “smart” environment composed of fixed automation technologies, SAR approaches it as an evolvable blended environment made from physical, virtual, conceptual, sensory, computational, and performative relationships. Its defining feature is not any particular sensor, model, or output device, but the set of transformations through which physical activity becomes structured observation, bounded representation, interpreted state, governed decision, and mediated response.

This paper develops the conceptual and methodological foundations of SAR as …

Quantifying Grain Size In Scanning Electron Microscopy Images, Katherine Hoffsetz

Discovery Day - Daytona Beach

This project explores advanced image analysis techniques to assess the microstructure of highly strained austenitic stainless steel. Utilizing Python imaging libraries such as scikit-image and OpenCV, we aim to extract precise measurements for grain size from scanning electron microscopy (SEM) images. These metrics will be examined against the computed grain sizes of the sample from electron backscatter diffraction measurements. By automating the extraction of grain size measurements from SEM images, this study contributes to steamlining the quality assurance/ quality control of industrially processed materials.

Sequential Causal Architecture For Multimodal Aviation Accident Prediction, Kaitlyn Cavanaugh, Isaac Morrison

Discovery Day - Daytona Beach

Aviation accidents are rarely the result of a single failure but rather from a complex causal chain of latent failures. While traditional data mining models often predict incident occurrence, they frequently overlook the sequential mechanics defined by known accident causation theoretical frameworks like the Swiss Cheese Model and the FAA's HFACS. This project addresses the need for interpretable, reliable, multi-stage forecasting by proposing a Sequential Causal Architecture that transforms theoretical causation models into a structured Directed Acyclic Graph (DAG) for multimodal accident causation chain prediction. Data from the NTSB and DOT is used and connected together in a meaningful way …

Small Uas Detection: Threat Intelligence & Risk Management Project, Tyler Johnson

Discovery Day - Daytona Beach

The TRANSPORTATION SECURITY ADMINISTRATION / FEDERAL AIR MARSHAL SUAS DETECTION: THREAT INTELLIGENCE & RISK MANAGEMENT PROJECT addresses the emerging safety and security challenges posed by the rapid growth of small Unmanned Aircraft Systems (sUAS) in complex airspace environments. This study analyzed 92 days of sensor-captured Remote Identification (RID) data collected near Fort Lauderdale-Hollywood International Airport (FLL) to assess operational behaviors, aviation risk, and ground risk associated with drone activity. The primary objective of this research is to identify patterns of unauthorized or hazardous sUAS operations to enhance situational awareness and inform actionable risk-mitigation strategies. The analysis identified 335 flights from …

Dcat - Distributed Computing And Analysis Tool, Asher Zwickel, Jacob Burdge

Discovery Day - Daytona Beach

This project uses distributed computing to process and analyze large datasets related to cyber breaches and attacks. Its main goal is to find patterns between initial cyber incidents and what happens next. It looks at whether responses tend to escalate, calm down, or stay about the same over time. Understanding this helps explain how digital conflicts develop and whether they follow predictable paths. The project was built as part of university research and runs on custom software across a cluster of 17 Chromebooks. While the system can study many topics, it is currently focused on cyber activity. The software uses …

Stormtrack: A Regime-Aware Classifier-Router Architecture For Multi-Horizon Kp Index Forecasting, John Rendleman

Discovery Day - Daytona Beach

STORMTRACK: A Regime-Aware Classifier-Router Architecture for Multi-Horizon Kp Index Forecasting Current algorithms in operational space weather face extreme difficultly predicting the Kp geomagnetic index beyond 24 hours, a lead time that is critical for protecting high-frequency communications and infrastructure. Most regression models are optimized for quiet conditions, which dominate the data, leading to systematic underpredictions of storm events that cripple space infrastructure. Probabilistic approaches and physics-based numerical models also falter due to the same class imbalance plaguing standard regressors at multi-day lead times. The ICARUS 6 architecture addresses this by splitting the forecasting component into quiet and storm regimes, which …

Federated Learning For Early Medical Diagnosis: Enhanced Diabetic Retinopathy Detection In Smart Healthcare, Mohammad Nasajpour Esfahani

Master's Theses

This thesis investigates the role of federated learning as a privacy-preserving solution for modern healthcare challenges. In traditional machine learning, sensitive medical data must be centralized for model training, raising concerns about privacy, security, and regulatory compliance. Federated learning offers an alternative by allowing hospitals, clinics, and personal health devices to collaboratively train shared models without exchanging raw patient data. The study first explores how federated learning is being used across various healthcare domains, including cancer detection, medical imaging, and disease prediction— highlighting its potential to support secure collaboration across institutions. It addresses key benefits such as data privacy, scalability, …

Causal Discovery In Photospheric Magnetic Field Time Series For Interpretable Solar Flare Prediction, Nathan W. Nelson

All Graduate Theses and Dissertations, Fall 2023 to Present

Solar flares are capable of damaging many valuable resources, including satellites, power grids, and even human lives. Being able to predict solar flares can allow for proactive measures to be taken that can prevent that damage. Many new deep learning methods for predicting solar flares have shown promise in this task, but the decisions they make are harder to explain to humans. This makes understanding why these models make mistakes difficult, which in turn makes fixing and maintaining them more challenging. We test a recent deep learning method that helps discover relationships between different measurements of the Sun as they …

A Data-Driven Nutrient Density Scoring Framework For Beef Using Principal Component Analysis, Teja Vuppala

All Graduate Theses and Dissertations, Fall 2023 to Present

Beef is one of the most nutrient-rich foods in the human diet, providing high-quality protein, iron, omega-3 fatty acids, B vitamins, and a wide range of other compounds important to health. However, current nutrition scoring systems used on food labels were designed to compare different foods to one another — for example, beef versus broccoli — and do not work well for judging the nutritional quality of different beef samples relative to each other. A grass-fed steak and a conventionally-finished steak can carry nearly identical Nutrition Facts panels while differing substantially in their content of omega-3 fatty acids, vitamins, and …

Machine Learning For Predictive Energy And Emissions Modeling Of Vehicles And Power Grids In The United States, S M Tanvir Faysal Alam Chowdhoury

Dissertations

The environmental benefits of electric vehicle (EV) adoption depend on more than replacing internal combustion engine vehicles with electric powertrains. EV adoption reshapes electricity demand, interacts with regional generation mixes, and influences travel behavior and congestion, creating a coupled transportation-energy system in which vehicle and power-plant emissions must be evaluated together. This dissertation develops machine-learning frameworks for predicting energy consumption and emissions from vehicles and power grids under rising EV adoption. The first component forecasts grid emissions from EV charging. Using simulation data from NREL's Cambium database, a Prophet-based time-series framework predicts carbon dioxide, nitrous oxide, and methane emission rates …

Predicting Student Belonging In Computing Education: A Multimodal Machine Learning Approach Using Eeg And Survey Data, Hannah Moshtaghi

Master's Theses

Measuring students’ sense of belonging, characterized by feelings of acceptance, inclusion, and encouragement from teachers, remains a significant challenge in computing education. Prior research has associated this multidimensional construct with positive academic outcomes and has identified instructors’ growth- and fixed-mindset messaging as a potential influence. However, belonging is a complex and deeply personal experience that is difficult to capture through direct observation alone. Current measurement methods rely on self-report surveys, which may not capture every aspect of an experience that can also involve emotional and cognitive responses.

This thesis investigates whether combining EEG data recorded during a belonging questionnaire with …

Evaluating Machine Learning Models On Classification Of Novel Cyber Attacks In The Healthcare Domain, Promise Ehimen

Dissertations, Theses, and Projects

The increasing adoption of the Internet of Medical Things (IoMT) has improved healthcare delivery through connected medical devices while simultaneously expanding the cybersecurity risks facing healthcare organizations. Although machine learning based intrusion detection systems have demonstrated high detection accuracy, their ability to respond reliably to previously unseen cyberattacks remains uncertain. This study investigated how a Neural Network model and a Logistic Regression model classified novel cyberattacks within the IoMT environment. The Neural Network and Logistic Regression models were both trained and tested using a subset of the CICIoMT2024 benchmark dataset. The Neural Network achieved 99.82% test accuracy and a 0.94 …

A Mathematical Decision-Making Framework For Athlete Development In A Collegiate Taekwondo Community: Prioritizing Coaching Interventions Using Statistical Analysis And The Analytic Hierarchy Process, King Harold A. Recto, Hazel Jade L. Antonio, Jhyrald Anthony P. Dalida

Electronics, Computer, and Communications Engineering Faculty Publications

Athlete development within collegiate sports communities requires informed decisions regarding the prioritization of coaching interventions and allocation of developmental resources. However, such decisions are frequently guided by experience and intuition, limiting opportunities for systematic and evidence-based decision-making. This study develops a mathematical decision-making framework for athlete development by integrating statistical analysis and the Analytic Hierarchy Process (AHP) within a collegiate taekwondo community. Data were collected from 25 collegiate taekwondo athletes who satisfied established eligibility criteria, including participation in University Athletic Association of the Philippines (UAAP) competitions during the previous three seasons. Athletes evaluated coaching practices across five dimensions: Training and …

Information Theory Analysis Of Water Vapor Stable Isotopes From The Sail Campaign, Matthew John Rybecky

Earth and Planetary Sciences ETDs

Understanding the processes that control water vapor isotopic composition in mountain environ- ments is essential for interpreting isotope records and predicting water resource responses to cli- mate change. This thesis applies information theory to continuous, high-resolution water vapor stable isotope measurements from the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in the East River watershed of Colorado’s Upper Gunnison Basin, spanning the winter- to-spring transition of 2022–2023. The analysis employs Shannon entropy, mutual information, transfer entropy, and joint transfer en- tropy (JTE) to quantify how environmental variables, including surface meteorology, radiation, tur- bulent fluxes, and ERA5 reanalysis products, transfer information …

Stylometric And Formal Patterns In The Scholarly Impact Of Scientific Literature, Joshua Ange, Eric Godat, Rajani Sudan

SMU Journal of Undergraduate Research

Scientific communication is typically tied to promoting public engagement and interest in science, increasing scientific literacy, and playing an essential role in policymaking. The success of public communication of scientific findings is largely associated with secondary characteristics of research (e.g. the style of writing and presentation), rather than the primary content or research quality. But it is unclear to what extent the success of scientific literature intended for working scientists is influenced by those same secondary characteristics. Does the writing style of scientific articles impact their success in academic spheres? In this study, we explore the stylometric and formal characteristics …

Cdt-1d Cnn Integration With Simpson-Sobolev Regularization For High-Frequency Options Trading: With Fem-Based Heston Option Pricing, Daniel M. Margolis, Johannes Tausch, Arthur K. Selender

Mathematics Theses and Dissertations

This dissertation presents a computational framework for high-frequency options trading that combines Cross-Data-Type 1-D Convolutional Neural Networks (CDT-1D CNN) with Simpson-Sobolev regularization for directional prediction, and finite element methods (FEM) for realistic option pricing during backtesting. The core innovation lies in developing a mathematically rigorous regularization approach that maintains the adaptability of modern deep learning while enabling accurate evaluation through stochastic volatility models. The primary contribution is the Simpson-Sobolev regularization scheme, which extends traditional Sobolev regularization by incorporating Simpson’s rule for numerical integration. This approach achieves higher-order accuracy in approximating the Sobolev norms that control function smoothness. Simpson’s rule attains …

Chi Meta-Project Ecosystem Overview - Spring 2026, David B. Smith

Publications and Research

This paper offers a high-level account of the Center for Holistic Integration’s (CHI) meta-project ecosystem as visualized in the included system map. CHI provides an organizational structure framed around persistent meta-projects that support and extend individual initiatives across curriculum, scholarly and applied research, infrastructure, artistic production, AI development, cultural inquiry, and external partnerships. Rather than presenting the map as a static inventory of projects, the paper examines how its core domains function as living systems through which knowledge, tools, documentation, participants, and collaborations can accumulate over time. It also considers how CHI-mediated connectivity, institutional integration, and external funding allow the …

Unmasking Twitter Bots: An Applied Machine Learning Approach, Rayane El Raba’A, Layal Abu Daher

BAU Journal - Science and Technology

The rapid growth of social networks has led to increased challenges, such as fraud, cyberbullying, and the spread of automated accounts (bots). Detecting anomalies within these networks is essential to maintaining security and trust. This study explored machine learning algorithms: Random Forest, XGBoost, Support Vector Machine (SVM), and Logistic Regression for anomaly detection in social networks, specifically focusing on Twitter bot identification, By applying AI-driven data mining techniques to a dataset of 37,438 Twitter bot accounts dataset, the research evaluates the effectiveness of these models in detecting unusual patterns. XGBoost achieved the highest accuracy (84.9%), with an ROA_AUC of 0.87, …

A Novel, Embedding-Based Approach To Longitudinal Survey Data Imputation, Julia Rezvani

University Honors Theses

Longitudinal surveys are ubiquitous in the social sciences as a means of tracking changes in behavior and opinions with time and identifying potential causal mechanisms. These surveys are frequently plagued by missing data and semantic drift, both of which limit their effectiveness and scientific utility. Imputation algorithms allow researchers to fill gaps in collected survey datasets, imperfectly reconstructing lost data. Although deep learning algorithms have been used in imputation to great success, approaches which simultaneously leverage the semantic and temporal structure of longitudinal surveys have not yet been developed. We propose a novel imputation architecture which is capable of leveraging …

The Security Of Llm-Generated Code, Christopher Brian Gonzalez Ayala

Student Theses

The rapid adoption of Large Language Models (LLMs) in software development has transformed coding practices by enabling automated code generation, completion, and optimization. Despite these advantages, concerns persist regarding the security and reliability of LLM-generated code. This study presents a comprehensive evaluation of both the functional correctness and security of code produced by three prominent LLMs as of early 2026. A total of 4,800 code snippets were generated using 100 security-focused programming prompts derived from the OWASP Top 10:2025, translated across eight natural languages and two phrasing styles (literal and natural developer-oriented prompts). To assess performance, a multi-stage experimental framework …

Inductive Biases In Field-Level Cosmological Inference From Galaxy Catalogs, James O'Connor Baldwin

Dissertations, Theses, and Capstone Projects

We perform field-level likelihood-free inference of the matter density parameter Ωm from simulated galaxy catalogs using machine learning models with differing inductive biases. Using features extracted from hydrodynamic simulations in the CAMELS suite, we investigate how both observable choice and model architecture govern the extraction of cosmological information. We consider galaxy positions and line-of-sight peculiar velocities, both separately and in combination, and compare permutation-invariant Deep Sets, implemented with either standard multilayer perceptrons (MLPs) or Kolmogorov–Arnold Networks (KANs), to graph neural networks (GNNs) implemented with MLPs, which explicitly encode spatial relations. We evaluate inference performance under both in-distribution and out-of-distribution (OOD) …

Bridging Data Gaps In Retinal Imaging: From Structural Domain Adaptation To Topology-Aware Synthesis, Gözde Merve Demirci

Dissertations, Theses, and Capstone Projects

Comprehensive visualization of the retina is essential for diagnosing and monitoring blinding diseases such as Diabetic Retinopathy and Retinopathy of Prematurity (ROP), where pathological changes often extend beyond a single field of view. Despite significant advances in automated retinal image analysis, clinical deployment remains limited by two fundamental data gaps: a structural learning gap, arising from scarce expert annotations and poor generalization across imaging domains, and a spatial coverage gap, caused by the difficulty of acquiring multi-view retinal images in fragile populations. Although these challenges are often addressed independently, this dissertation argues that they are tightly coupled: accurate, …

Crab: A Novel Clustering Score Using Clustering With Rivals And Buddies For Unsupervised Learning, Allen Choi

Master's Theses

Unsupervised clustering algorithms today are used across a wide variety of fields such as biology, engineering, and industry in order to classify observations into groups where labels are not provided. This can provide important latent information regarding the observations within groups, as well as insight regarding the groups themselves. In order to judge the optimal number of clusters for an unsupervised clustering algorithm, many methods exist such as the Elbow Method and Silhouette Score; however, these methods come with drawbacks and are not necessarily flexible across many unsupervised methods. We present a novel clustering score framework relying on a resampling-based …

Edge Co-Occurrence Regularization For Node Classification, Kadir Altunel

Theses

We propose a simple yet effective regularization technique for node classification on graphs that leverages edge-based label co-occurrence patterns. We first train an MLP on node features to produce class probability distributions, then compute a fixed penalty matrix from edge-based co-occurrence statistics of these predictions. This penalty matrix, which captures unlikely class combinations on connected nodes, is then used to regularize GNN training without further updates. We evaluate this approach across multiple homophilic datasets (Cora, CiteSeer, PubMed, ogbn-arxiv) and heterophilic benchmarks (Chameleon, Squirrel, Actor, Roman-Empire) using three GNN architectures: GCN, GraphSAGE, and H2GCN. Results show consistent improvements on homophilic graphs, …

A Generative Ai-Driven Computational Framework For Industry-Scale Discovery Of Novel Battery Materials, Joy Datta

Dissertations

The growing demand for sustainable, high-energy-density electrochemical storage has motivated the exploration of multivalent-ion batteries based on earth-abundant elements such as aluminum, calcium, magnesium, and zinc. While multivalent charge carriers offer higher theoretical energy density than lithium, their practical deployment is hindered by sluggish ion transport, strong ion-host interactions, and structural degradation of electrode materials. Identifying host materials that can reversibly accommodate multivalent ions while maintaining structural integrity remains a fundamental challenge. The dissertation develops a scalable, end-to-end computational framework that integrates density functional theory (DFT), machine learning (ML), and generative artificial intelligence (GenAI) to accelerate the discovery of next-generation …

Toward Learning-Based Reconstruction And Part Decomposition Of Man-Made 3d Geometry: Neural Implicit Representations And Scalable Supervision, Shen Fan

Dissertations

Digital three-dimensional (3D) models are central to engineering design, analysis, and manufacturing, but learning pipelines for man-made geometry often operate on sampled carriers that do not preserve all of the structure present in exact CAD representations. This dissertation studies learning-based reconstruction and part decomposition for structured man-made 3D geometry, from general object benchmarks to CAD-derived datasets, with a focus on neural implicit representations trained from signed-distance samples, point clouds, and tessellated meshes. The goal is to make these models more accurate, more part-aware, and more consistently supervised.

First, signed distance function (SDF) reconstruction with implicit neural representations is improved through …

An Analytical Framework For Quantifying Urban And Community Resilience To Natural Hazards From Cell-Phone Gps-Location And Traffic-Flow Data, Georgios Chatzikyriakidis

Civil and Environmental Engineering Theses and Dissertations

Urban areas are increasingly exposed to natural hazards while accommodating a growing share of the global population, yet a consistent science-based framework for quantifying urban and community resilience remains lacking. This dissertation develops a physics-based analytical framework grounded in statistical mechanics and the quantitative theory of Brownian motion. A city is conceptualized as a complex medium in which citizens move analogously to Brownian particles within a viscoelastic environment, influenced by socioeconomic interactions and infrastructure functionality.

A central premise is that urban resilience, interpreted as engineering resilience (an outcome), can be quantified through a single metric: the mean-square displacement MSD=⟨r²(t)⟩, of …

Uncovering The Impact Of Youtube's Hidden Algorithm On Its Users, Oscar Perez

COD Library Student Research and Award Symposium

YouTube is a well-known platform that offers users endless hours of news, entertainment, and education. This research seeks to understand how the algorithm functions and uncover the effects of allowing a system to curate content for viewers. The research combines academic sources with fieldwork to understand the impact of YouTube's algorithm.

Faculty Sponsor:  Professor Jacqueline McGrath