Data Science Commons^™

Individualized Bayesian Inference Identifies Novel Genetic Variants For Parkinson's Disease, Jin Ren, Yasaman J. Soofi, Md Asad Rahman, Qing Lu, Jinling Liu

Engineering Management and Systems Engineering Faculty Research & Creative Works

Parkinson's disease (PD) is a complex neurodegenerative disorder with a significant genetic component. While genome-wide association studies (GWAS) have been instrumental in identifying genetic variants associated with PD, the reliance on large sample sizes and population-level analyses may overlook variants with lower minor allele frequencies or individual-specific relevance. Individualized Bayesian Inference (IBI) offers a promising method to complement GWAS by identifying and prioritizing candidate genetic markers at both the individual and patients-like-me subgroup levels. This study evaluates the application of IBI to PD genetics, using GWAS as a baseline for comparison. We analyzed genetic data from the Fox Insight online …

The Self-Aware Room: A Framework For Operational Self-Awareness In Evolvable Blended Environments, David B. Smith

Publications and Research

The Self-Aware Room (SAR) is a room-scale research environment developed within the larger Balanced Blended Space and Blended Reality Performance System research trajectory. Rather than treating the room as a conventional “smart” environment composed of fixed automation technologies, SAR approaches it as an evolvable blended environment made from physical, virtual, conceptual, sensory, computational, and performative relationships. Its defining feature is not any particular sensor, model, or output device, but the set of transformations through which physical activity becomes structured observation, bounded representation, interpreted state, governed decision, and mediated response.

This paper develops the conceptual and methodological foundations of SAR as …

Stormtrack: A Regime-Aware Classifier-Router Architecture For Multi-Horizon Kp Index Forecasting, John Rendleman

Discovery Day - Daytona Beach

STORMTRACK: A Regime-Aware Classifier-Router Architecture for Multi-Horizon Kp Index Forecasting Current algorithms in operational space weather face extreme difficultly predicting the Kp geomagnetic index beyond 24 hours, a lead time that is critical for protecting high-frequency communications and infrastructure. Most regression models are optimized for quiet conditions, which dominate the data, leading to systematic underpredictions of storm events that cripple space infrastructure. Probabilistic approaches and physics-based numerical models also falter due to the same class imbalance plaguing standard regressors at multi-day lead times. The ICARUS 6 architecture addresses this by splitting the forecasting component into quiet and storm regimes, which …

Predicting Student Belonging In Computing Education: A Multimodal Machine Learning Approach Using Eeg And Survey Data, Hannah Moshtaghi

Master's Theses

Measuring students’ sense of belonging, characterized by feelings of acceptance, inclusion, and encouragement from teachers, remains a significant challenge in computing education. Prior research has associated this multidimensional construct with positive academic outcomes and has identified instructors’ growth- and fixed-mindset messaging as a potential influence. However, belonging is a complex and deeply personal experience that is difficult to capture through direct observation alone. Current measurement methods rely on self-report surveys, which may not capture every aspect of an experience that can also involve emotional and cognitive responses.

This thesis investigates whether combining EEG data recorded during a belonging questionnaire with …

Evaluating Machine Learning Models On Classification Of Novel Cyber Attacks In The Healthcare Domain, Promise Ehimen

Dissertations, Theses, and Projects

The increasing adoption of the Internet of Medical Things (IoMT) has improved healthcare delivery through connected medical devices while simultaneously expanding the cybersecurity risks facing healthcare organizations. Although machine learning based intrusion detection systems have demonstrated high detection accuracy, their ability to respond reliably to previously unseen cyberattacks remains uncertain. This study investigated how a Neural Network model and a Logistic Regression model classified novel cyberattacks within the IoMT environment. The Neural Network and Logistic Regression models were both trained and tested using a subset of the CICIoMT2024 benchmark dataset. The Neural Network achieved 99.82% test accuracy and a 0.94 …

Stylometric And Formal Patterns In The Scholarly Impact Of Scientific Literature, Joshua Ange, Eric Godat, Rajani Sudan

SMU Journal of Undergraduate Research

Scientific communication is typically tied to promoting public engagement and interest in science, increasing scientific literacy, and playing an essential role in policymaking. The success of public communication of scientific findings is largely associated with secondary characteristics of research (e.g. the style of writing and presentation), rather than the primary content or research quality. But it is unclear to what extent the success of scientific literature intended for working scientists is influenced by those same secondary characteristics. Does the writing style of scientific articles impact their success in academic spheres? In this study, we explore the stylometric and formal characteristics …

Cdt-1d Cnn Integration With Simpson-Sobolev Regularization For High-Frequency Options Trading: With Fem-Based Heston Option Pricing, Daniel M. Margolis, Johannes Tausch, Arthur K. Selender

Mathematics Theses and Dissertations

This dissertation presents a computational framework for high-frequency options trading that combines Cross-Data-Type 1-D Convolutional Neural Networks (CDT-1D CNN) with Simpson-Sobolev regularization for directional prediction, and finite element methods (FEM) for realistic option pricing during backtesting. The core innovation lies in developing a mathematically rigorous regularization approach that maintains the adaptability of modern deep learning while enabling accurate evaluation through stochastic volatility models. The primary contribution is the Simpson-Sobolev regularization scheme, which extends traditional Sobolev regularization by incorporating Simpson’s rule for numerical integration. This approach achieves higher-order accuracy in approximating the Sobolev norms that control function smoothness. Simpson’s rule attains …

Chi Meta-Project Ecosystem Overview - Spring 2026, David B. Smith

Publications and Research

This paper offers a high-level account of the Center for Holistic Integration’s (CHI) meta-project ecosystem as visualized in the included system map. CHI provides an organizational structure framed around persistent meta-projects that support and extend individual initiatives across curriculum, scholarly and applied research, infrastructure, artistic production, AI development, cultural inquiry, and external partnerships. Rather than presenting the map as a static inventory of projects, the paper examines how its core domains function as living systems through which knowledge, tools, documentation, participants, and collaborations can accumulate over time. It also considers how CHI-mediated connectivity, institutional integration, and external funding allow the …

Unmasking Twitter Bots: An Applied Machine Learning Approach, Rayane El Raba’A, Layal Abu Daher

BAU Journal - Science and Technology

The rapid growth of social networks has led to increased challenges, such as fraud, cyberbullying, and the spread of automated accounts (bots). Detecting anomalies within these networks is essential to maintaining security and trust. This study explored machine learning algorithms: Random Forest, XGBoost, Support Vector Machine (SVM), and Logistic Regression for anomaly detection in social networks, specifically focusing on Twitter bot identification, By applying AI-driven data mining techniques to a dataset of 37,438 Twitter bot accounts dataset, the research evaluates the effectiveness of these models in detecting unusual patterns. XGBoost achieved the highest accuracy (84.9%), with an ROA_AUC of 0.87, …

A Novel, Embedding-Based Approach To Longitudinal Survey Data Imputation, Julia Rezvani

University Honors Theses

Longitudinal surveys are ubiquitous in the social sciences as a means of tracking changes in behavior and opinions with time and identifying potential causal mechanisms. These surveys are frequently plagued by missing data and semantic drift, both of which limit their effectiveness and scientific utility. Imputation algorithms allow researchers to fill gaps in collected survey datasets, imperfectly reconstructing lost data. Although deep learning algorithms have been used in imputation to great success, approaches which simultaneously leverage the semantic and temporal structure of longitudinal surveys have not yet been developed. We propose a novel imputation architecture which is capable of leveraging …

The Security Of Llm-Generated Code, Christopher Brian Gonzalez Ayala

Student Theses

The rapid adoption of Large Language Models (LLMs) in software development has transformed coding practices by enabling automated code generation, completion, and optimization. Despite these advantages, concerns persist regarding the security and reliability of LLM-generated code. This study presents a comprehensive evaluation of both the functional correctness and security of code produced by three prominent LLMs as of early 2026. A total of 4,800 code snippets were generated using 100 security-focused programming prompts derived from the OWASP Top 10:2025, translated across eight natural languages and two phrasing styles (literal and natural developer-oriented prompts). To assess performance, a multi-stage experimental framework …

Inductive Biases In Field-Level Cosmological Inference From Galaxy Catalogs, James O'Connor Baldwin

Dissertations, Theses, and Capstone Projects

We perform field-level likelihood-free inference of the matter density parameter Ωm from simulated galaxy catalogs using machine learning models with differing inductive biases. Using features extracted from hydrodynamic simulations in the CAMELS suite, we investigate how both observable choice and model architecture govern the extraction of cosmological information. We consider galaxy positions and line-of-sight peculiar velocities, both separately and in combination, and compare permutation-invariant Deep Sets, implemented with either standard multilayer perceptrons (MLPs) or Kolmogorov–Arnold Networks (KANs), to graph neural networks (GNNs) implemented with MLPs, which explicitly encode spatial relations. We evaluate inference performance under both in-distribution and out-of-distribution (OOD) …

Bridging Data Gaps In Retinal Imaging: From Structural Domain Adaptation To Topology-Aware Synthesis, Gözde Merve Demirci

Dissertations, Theses, and Capstone Projects

Comprehensive visualization of the retina is essential for diagnosing and monitoring blinding diseases such as Diabetic Retinopathy and Retinopathy of Prematurity (ROP), where pathological changes often extend beyond a single field of view. Despite significant advances in automated retinal image analysis, clinical deployment remains limited by two fundamental data gaps: a structural learning gap, arising from scarce expert annotations and poor generalization across imaging domains, and a spatial coverage gap, caused by the difficulty of acquiring multi-view retinal images in fragile populations. Although these challenges are often addressed independently, this dissertation argues that they are tightly coupled: accurate, …

Edge Co-Occurrence Regularization For Node Classification, Kadir Altunel

Theses

We propose a simple yet effective regularization technique for node classification on graphs that leverages edge-based label co-occurrence patterns. We first train an MLP on node features to produce class probability distributions, then compute a fixed penalty matrix from edge-based co-occurrence statistics of these predictions. This penalty matrix, which captures unlikely class combinations on connected nodes, is then used to regularize GNN training without further updates. We evaluate this approach across multiple homophilic datasets (Cora, CiteSeer, PubMed, ogbn-arxiv) and heterophilic benchmarks (Chameleon, Squirrel, Actor, Roman-Empire) using three GNN architectures: GCN, GraphSAGE, and H2GCN. Results show consistent improvements on homophilic graphs, …

A Generative Ai-Driven Computational Framework For Industry-Scale Discovery Of Novel Battery Materials, Joy Datta

Dissertations

The growing demand for sustainable, high-energy-density electrochemical storage has motivated the exploration of multivalent-ion batteries based on earth-abundant elements such as aluminum, calcium, magnesium, and zinc. While multivalent charge carriers offer higher theoretical energy density than lithium, their practical deployment is hindered by sluggish ion transport, strong ion-host interactions, and structural degradation of electrode materials. Identifying host materials that can reversibly accommodate multivalent ions while maintaining structural integrity remains a fundamental challenge. The dissertation develops a scalable, end-to-end computational framework that integrates density functional theory (DFT), machine learning (ML), and generative artificial intelligence (GenAI) to accelerate the discovery of next-generation …

Toward Learning-Based Reconstruction And Part Decomposition Of Man-Made 3d Geometry: Neural Implicit Representations And Scalable Supervision, Shen Fan

Dissertations

Digital three-dimensional (3D) models are central to engineering design, analysis, and manufacturing, but learning pipelines for man-made geometry often operate on sampled carriers that do not preserve all of the structure present in exact CAD representations. This dissertation studies learning-based reconstruction and part decomposition for structured man-made 3D geometry, from general object benchmarks to CAD-derived datasets, with a focus on neural implicit representations trained from signed-distance samples, point clouds, and tessellated meshes. The goal is to make these models more accurate, more part-aware, and more consistently supervised.

First, signed distance function (SDF) reconstruction with implicit neural representations is improved through …

Dynamic Trust Calibration, Bruno Miranda Henrique

Dartmouth College Ph.D Dissertations

Trust calibration between humans and Artificial Intelligence (AI) is crucial for optimal decision-making in collaborative settings. Excessive trust can lead users to accept AI-generated outputs without question, overlooking critical flaws, while insufficient trust may result in disregarding valuable insights from AI systems, hindering performance. Despite its importance, there is currently no definitive and objective method for measuring trust calibration between humans and AI. Current approaches lack standardization and consistent metrics that can be broadly applied across various contexts, and they don’t distinguish between the formation of opinions and subsequent human decisions. This thesis brings a novel and objective method for …

Meeting The Moment With Ai-Employer Informed Education, Brent Terwilliger, John Faraca

Publications

As artificial intelligence transforms aviation, aerospace, and autonomy-related sectors, higher education must adapt to meet evolving workforce demands. This session shares emerging findings from a nationwide study led by Embry-Riddle Aeronautical University, focused on employer perceptions of AI adoption, responsible use, and workforce preparedness in domains including uncrewed systems, space systems, robotics, and advanced air mobility. Based on a structured survey and follow-up interviews, the presentation explores how organizations are using AI tools, from generative platforms to enterprise systems, and defining effective and inappropriate use in operational contexts. Participants will gain insight into critical concerns (e.g., data privacy, compliance, security, …

Labeling And Describing Objects In A Photogrammetry-Based 3d Environment Using Computer Vision And Artificial Intelligence, Colin Donald Moschella

Capstone Projects

Cataloging and digitizing the objects inside a building manually is a task that is often impractical at scale. This project therefore automates the process, using a custom-made system. Using a photogrammetry-based 3D reconstruction of a room, this system is applied to sequences of 2D images used to make the 3D models. The system applies object detection, image segmentation, and image-text models to identify and describe objects, using CNN based models such as YOLO and OpenCLIP. Each analyzed object is then stored in a structured database with spatial coordinates from the 3D scanning, descriptive attributes from the image-text models, and other …

Stridevision: Automated Detection Of Running Form Deviations From 2d Pose Estimation And Machine Learning, Paulina Eguibar Ortega

Honors Theses

Running gait analysis plays a critical role in injury prevention and performance optimization, however, existing approaches often rely on specialized laboratory equipment or wearable sensors with limited interpretability. Recent advances in computer vision, particularly 2D human pose estimation, enable markerless motion analysis from standard video. However, progress remains constrained by the lack of publicly available datasets designed for running form analysis.

In this work, we introduce a preliminary dataset and benchmark for stride-level running gait analysis. The dataset consists of 73 treadmill running videos from 15 participants with varying experience levels, annotated with over 4,600 stride-level labels across multiple biomechanical …

Improving Semantic Precision In Text-To-Image Diffusion Models Via Latent-Space Optimization And Semantically-Parsed Evaluation, Mohammad Rouie Miab

McKelvey School of Engineering Graduate Student Theses & Dissertations

Text-to-image diffusion models can produce visually impressive images from natural-language prompts, but they often fail to satisfy the detailed semantic constraints expressed in compositional prompts. Typical failure modes include omitted objects, merged entities, incorrect quantities, incorrect attribute binding, and leakage of one entity's attributes onto another. This thesis studies the problem of semantic precision in text-to-image generation: how faithfully a generated image satisfies the structured meaning of its prompt.   The thesis makes two linked contributions. First, it presents a training-free inference-time refinement method for diffusion-based image generation. The method operates directly in latent space during denoising and uses noun-phrase-aware cross-attention …

Propasafe-Hybrid: A Text-Based Hybrid Propaganda Detection Tool, Thomas Kimmeth, Avijit Roy, Vivek Sharma

Publications and Research

Propagandistic content increasingly circulates through online news and social media, where readers often encounter it with limited scrutiny, highlighting the need for reliable and fine-grained detection. This paper introduces Propasafe-Hybrid, a sentence-level system that integrates a fine-tuned transformer classifier with LLM-based technique classification to identify, label, and explain specific propaganda strategies. The pipeline generates actionable outputs, including highlighted sentences, technique assignments, and concise rationales, so users can immediately understand why a sentence was flagged and how each label was determined. To control inference cost, Propasafe-Hybrid employs a cost-aware pre-filtering stage that forwards only high-likelihood sentences to LLMs, reducing token usage …

Augmented Reality In Fashion Retail: A Walmart Unlimited Study, Chloe A. Mcpherson

Apparel Merchandising and Product Development Undergraduate Honors Theses

As technology continues to evolve, augmented reality (AR) has become increasingly common within the retail and fashion industries. This study explored Gen Z consumers’ perceptions of immersive AR shopping experiences through Walmart Unlimited, an interactive digital shopping platform. The purpose of this research was to better understand how younger consumers respond to AR-enhanced shopping environments and whether these technologies influence attitudes toward convenience, engagement, and sustainability in retail.

A quantitative research design was used for this study. Participants completed the Walmart Unlimited shopping experience and then responded to a Qualtrics survey measuring areas such as immersion, satisfaction, ease of use, …

Pyspqr: A Python Package For Density Estimation Using Deep Learning, Cameron Eddy, Reetam Majumder

Electrical Engineering and Computer Science Undergraduate Honors Theses

Splines are used for representing complex functions. In statistics, splines can be used for distributional shapes that are difficult to model by traditional parametric approaches. Ramsay (1) uses M-Spline bases to estimate continuous distributions. Semi-Parametric Quantile Regression (SPQR), developed by Xu and Reich (2), models conditional distributions where a neural network is used to estimate the basis function weights that depend on covariates. (3) implements a package for SPQR in R. We build on this by implementing a version of SPQR in Python with PyTorch. By using PyTorch, we can use more sophisticated deep learning architectures than those available in …

Analyzing The Writing Style Of Generative Ai When Prompted With Writing Samples, Samuel Mcdowell

Senior Honors Theses

Authorship attribution is an important topic in today’s world of Large Language Models (LLMs). It is the technology that helps to verify the author of a written work. This study explores whether LLMs can successfully mimic an individual’s writing style if they are given a text sample. A dataset of human-written texts was collected and used to prompt several LLMs to generate new texts that attempt to replicate the original author’s stylistic characteristics. The generated texts were then tested with modern authorship attribution models to determine whether they would be identified as being written by the original author. The results …

A Deep Learning-Based Approach For Bot Detection In Trending Hashtags On X, Mehboob Hussain, Muhammad Rizwan Rashid Rana, Muhammad Imran, Muhammad Shoaib, Muhammad Hasaan Mujtaba

Makara Journal of Technology

The widespread presence of bots on social media platforms, such as X (formerly Twitter), poses a significant threat to the integrity of online information by facilitating the dissemination of misinformation and manipulating public discourse. This study proposes a robust deep learning-based framework, DeepBot, to detect bot participation in trending hashtags and discussions on X. The approach uses a dataset sourced from Kaggle, comprising user profile metadata, including follower count, tweet frequency, account verification status, and engagement metrics. The data were subjected to comprehensive preprocessing, including noise removal, part-of-speech (POS) tagging, and word embedding using the pre-trained GloVe model. RoBERTa is …

The Digital Neuron: Neural Cellular Automata For Neural–Symbolic Translation, Nicole Assenza

SMU Data Science Review

A neural cellular automata (NCA) architecture, referred to as Pluto’s NCA, was developed to characterize bilateral communication and semantic reciprocity between symbolic representations and a spatially distributed update field. The architecture employs an encoder–automata–decoder pipeline that maps symbolic inputs into a multichannel state field and reconstructs them through agreement-driven attractor convergence within a stable semantic attractor landscape. System behavior was evaluated under controlled perturbations, including rhythmic desynchronization, graded ablations, correlated and independent noise, and percolation-based structural degradation. Quantities such as Agreement(t), internal coherence Aᵢ(t), the recovery time constant τ, and the critical percolation threshold pc were measured to assess stability, …

Deconstructing The Black Box: An Explainability Analysis Of Deep Learning Architectures In Cytopathology, Chase A. Garrett

SACAD: Scholarly Activities

Deep learning shows strong potential in medical-image analysis, yet adoption in cyptopathology

remains limited. Cytopathology could benefit from deep learning applications by improving

diagnostic efficiency and accuracy. However deep learning comes with a notorious “black box”

that keeps the models from being transparent and trustworthy for widespread clinical adoption.

We conducted a comprehensive and comparative analysis of several deep learning architectures

for multi-class classification of acute leukemia types, ALL, AML, and normal healthy cells from

peripheral blood smear images. The models in this research include a Vision Transformer (ViT)

and a diverse selection of Convolutional Neural Network (CNN) models. The …

Dermal: A Multi-Input Deep Learning Model For Improving Access To Dermatological Screening, Aubreye Freeman

ATU Scholars Symposium

According to the World Health Organization's press release on December 12, 2024, global healthcare spending is dropping significantly, leaving a large percentage of the world without proper healthcare. In an attempt to alleviate this problem, with respect to the field of dermatology, we created a deep learning model, Dermatology Enhanced by Recognition and Machine Aided Learning (DERMAL), to assist in diagnosing skin conditions. DERMAL was trained on a portion of the Google and Stanford Medicine's SCIN dataset, which has more than 10,000 images of various skin conditions. The 9 most common skin conditions of the dataset were selected as the …

Scenarioxp: A Complete Scenario-Based Testing Framework For The Exploration And Exploitation Of Autonomous Vehicle Validation Scenarios, Quentin Goss

Doctoral Dissertations and Master's Theses

Today is an age of exciting emerging technology where cutting-edge research in autonomous vehicles (AVs) reduces the active human participation in driving and extends awareness beyond human limitations of perception and reaction, improving driving safety and quality of the user experience as a result. The ever-increasing complexity of these autonomous systems poses many challenges towards the validation and verification (V\&V) of these complex systems under time and resource constraints, as the use of artificial intelligence and also the intricacy of the operating environment means that these systems are also black-box and non-deterministic. Scenario-based V\&V testing of such systems, which involves …