Data Science Commons^™

Towards Explainable Ai On Graph Neural Networks: Xaig, Jiaxing Zhang

Dissertations

In the evolving landscape of artificial intelligence (AI), Graph Neural Networks (GNNs) have garnered growing prominence for their adeptness in processing graph-structured data. Despite this, the interpretability of their predictions often remains elusive. The demand for transparency and explainability in complex prediction models has reached unprecedented levels. To address this, post-hoc instance-level explanation techniques have emerged, aiming to unveil the rationale behind GNN predictions. These techniques endeavor to unearth substructures that elucidate the predictive behavior of trained GNNs.

This dissertation embarks on an exploration of Explainable AI (XAI) technologies within the realm of GNNs. Amid the challenges posed by the …

Advancing Multivariate Time Series Similarity Assessment: An Integrated Computational Approach, Franck B.N. Tonle, Henri E.Z. Tonnang, Milliam M.Z. Ndadji, Maurice Tchoupe Tchendji, Armand Nzeukou, Kennedy Senagi, Saliou Niassy

All Peer-Reviewed Publications

Data mining, particularly multivariate time series data analysis, is crucial in extracting insights from complex systems and supporting informed decision-making across diverse domains. However, assessing the similarity of multivariate time series data presents several challenges, including dealing with large datasets, addressing temporal misalignments, and necessitating efficient and comprehensive analytical frameworks. A novel integrated computational approach, Multivariate Time series Alignment and Similarity Assessment (MTASA) is proposed to address these challenges. MTASA is built upon a hybrid methodology designed to optimise time series alignment, complemented by a multiprocessing engine that enhances the utilisation of computational resources. This integrated approach comprises four key …

Spec: A Soft Prompt-Based Calibration On Performance Variability Of Large Language Model In Clinical Notes Summarization, Yu-Neng Chuang, Ruixiang Tang, Xiaoqian Jiang, Xia Hu

Faculty, Staff and Student Publications

Electronic health records (EHRs) store an extensive array of patient information, encompassing medical histories, diagnoses, treatments, and test outcomes. These records are crucial for enabling healthcare providers to make well-informed decisions regarding patient care. Summarizing clinical notes further assists healthcare professionals in pinpointing potential health risks and making better-informed decisions. This process contributes to reducing errors and enhancing patient outcomes by ensuring providers have access to the most pertinent and current patient data. Recent research has shown that incorporating instruction prompts with large language models (LLMs) substantially boosts the efficacy of summarization tasks. However, we show that this approach also …

A Real-World Disproportionality Analysis Of Everolimus: Data Mining Of The Public Version Of Fda Adverse Event Reporting System, Bin Zhao, Yumei Fu, Shichao Cui, Xiangning Chen, Shu Liu, Lan Luo

Faculty, Staff and Student Publications

Background: Everolimus is an inhibitor of the mammalian target of rapamycin and is used to treat various tumors. The presented study aimed to evaluate the Everolimus-associated adverse events (AEs) through data mining of the US Food and Drug Administration Adverse Event Reporting System (FAERS).

Methods: The AE records were selected by searching the FDA Adverse Event Reporting System database from the first quarter of 2009 to the first quarter of 2022. Potential adverse event signals were mined using the disproportionality analysis, including reporting odds ratio the proportional reporting ratio the Bayesian confidence propagation neural network and the empirical Bayes geometric …

Quantification Of Landside Congestion In Ports: An Analysis Based On Gps Data, Kumushini Thennakoon, Namal Bandaranayake, Senevi Kiridena, Asela K. Kulatunga

Computer Science Faculty Publications

Hinterland transport is a critical segment in maritime cross-border logistics, which links the end-users of global supply chains to the maritime segment. Truck-based hinterland transport is known to cause congestion in and around ports. This study aimed to quantify the congestion caused by trucks at the Port of Colombo, which has not been a subject of a systematic study. To this end, the study makes use of GPS data. In addition to revealing heavy congestion within the port, the study also reveals significant variations in congestion during different times of the day with the duration of journeys peaking from 1200hrs …

Cannabidiol Tweet Miner: A Framework For Identifying Misinformation In Cbd Tweets., Jason Turner

Electronic Theses and Dissertations

As regulations surrounding cannabis continue to develop, the demand for cannabis-based products is on the rise. Despite not producing the psychoactive effects commonly associated with THC, products containing cannabidiol (CBD) have gained immense popularity in recent years as a potential treatment option for a range of conditions, particularly those associated with pain or sleep disorders. However, due to current federal policies, these products have yet to undergo comprehensive safety and efficacy testing. Fortunately, utilizing advanced natural language processing (NLP) techniques, data harvested from social networks have been employed to investigate various social trends within healthcare, such as disease tracking and …

The Impact Framework And Implementation For Accessible In Silico Clinical Phenotyping In The Digital Era, Andrew Wen, Huan He, Sunyang Fu, Sijia Liu, Kurt Miller, Liwei Wang, Kirk E Roberts, Steven D Bedrick, William R Hersh, Hongfang Liu

Faculty, Staff and Student Publications

Clinical phenotyping is often a foundational requirement for obtaining datasets necessary for the development of digital health applications. Traditionally done via manual abstraction, this task is often a bottleneck in development due to time and cost requirements, therefore raising significant interest in accomplishing this task via in-silico means. Nevertheless, current in-silico phenotyping development tends to be focused on a single phenotyping task resulting in a dearth of reusable tools supporting cross-task generalizable in-silico phenotyping. In addition, in-silico phenotyping remains largely inaccessible for a substantial portion of potentially interested users. Here, we highlight the barriers to the usage of in-silico phenotyping …

Ptmtorrent: A Dataset For Mining Open-Source Pre-Trained Model Packages, Wenxin Jiang, Nicholas Synovic, Purvish Jajal, Taylor R. Schorlemmer, Arav Tewari, Bhavesh Pareek, George K. Thiruvathukal, James C. Davis

Computer Science: Faculty Publications and Other Works

Due to the cost of developing and training deep learning models from scratch, machine learning engineers have begun to reuse pre-trained models (PTMs) and fine-tune them for downstream tasks. PTM registries known as “model hubs” support engineers in distributing and reusing deep learning models. PTM packages include pre-trained weights, documentation, model architectures, datasets, and metadata. Mining the information in PTM packages will enable the discovery of engineering phenomena and tools to support software engineers. However, accessing this information is difficult — there are many PTM registries, and both the registries and the individual packages may have rate limiting for accessing …

Dense & Attention Convolutional Neural Networks For Toe Walking Recognition, Junde Chen, Rahul Soangra, Marybeth Grant-Beuttler, Y. A. Nanehkaran, Yuxin Wen

Physical Therapy Faculty Articles and Research

Idiopathic toe walking (ITW) is a gait disorder where children’s initial contacts show limited or no heel touch during the gait cycle. Toe walking can lead to poor balance, increased risk of falling or tripping, leg pain, and stunted growth in children. Early detection and identification can facilitate targeted interventions for children diagnosed with ITW. This study proposes a new one-dimensional (1D) Dense & Attention convolutional network architecture, which is termed as the DANet, to detect idiopathic toe walking. The dense block is integrated into the network to maximize information transfer and avoid missed features. Further, the attention modules are …

Campus Safety Data Gathering, Classification, And Ranking Based On Clery-Act Reports, Walaa F. Abo Elenin

College of Graduate Studies: Theses & Dissertations

Most existing campus safety rankings are based on criminal incident history with minimal or no consideration of campus security conditions and standard safety measures. Campus safety information published by universities/colleges is usually conceptual/qualitative and not quantitative and are based-on criminal records of these campuses. Thus, no explicit and trusted ranking method for these campuses considers the level of compliance with the standard safety measures. A quantitative safety measure is important to compare different campuses easily and to learn about specific campus safety conditions.

In this thesis, we utilize Clery-Act reports of campuses to automatically analyze their safety conditions and generate …

Analyzing The Production And Use Of Fossil Fuels: A Case For Data Mining And Gis, Alejandro Conde

Geography and the Environment: Graduate Student Capstones

As technology progresses and data grows both larger and more complex, techniques are being developed to keep up with the exponential growth of information. The term “data mining” is a blanket term used to describe an approach to find anomalies and correlations in a large dataset. This approach involves leveraging data mining software to manipulate and prepare data, apply statistics to quantify trends and characteristics in the data from a high level, and potentially apply advanced techniques like machine learning to identify patterns that wouldn’t be apparent otherwise. In this case study, data mining aided a GIS in displaying substantial …

Solving The Challenges Of Concept Drift In Data Stream Classification., Hanqing Hu

Electronic Theses and Dissertations

The rise of network connected devices and applications leads to a significant increase in the volume of data that are continuously generated overtime time, called data streams. In real world applications, storing the entirety of a data stream for analyzing later is often not practical, due to the data stream’s potentially infinite volume. Data stream mining techniques and frameworks are therefore created to analyze streaming data as they arrive. However, compared to traditional data mining techniques, challenges unique to data stream mining also emerge, due to the high arrival rate of data streams and their dynamic nature. In this dissertation, …

Innovative Heuristics To Improve The Latent Dirichlet Allocation Methodology For Textual Analysis And A New Modernized Topic Modeling Approach, Jamie T. Zimmerman

Theses and Dissertations

Natural Language Processing is a complex method of data mining the vast trove of documents created and made available every day. Topic modeling seeks to identify the topics within textual corpora with limited human input into the process to speed analysis. Current topic modeling techniques used in Natural Language Processing have limitations in the pre-processing steps. This dissertation studies topic modeling techniques, those limitations in the pre-processing, and introduces new algorithms to gain improvements from existing topic modeling techniques while being competitive with computational complexity. This research introduces four contributions to the field of Natural Language Processing and topic modeling. …

Constructing Prediction Intervals With Neural Networks: An Empirical Evaluation Of Bootstrapping And Conformal Inference Methods, Alexander N. Contarino

Theses and Dissertations

Artificial neural networks (ANNs) are popular tools for accomplishing many machine learning tasks, including predicting continuous outcomes. However, the general lack of confidence measures provided with ANN predictions limit their applicability, especially in military settings where accuracy is paramount. Supplementing point predictions with prediction intervals (PIs) is common for other learning algorithms, but the complex structure and training of ANNs renders constructing PIs difficult. This work provides the network design choices and inferential methods for creating better performing PIs with ANNs to enable their adaptation for military use. A two-step experiment is executed across 11 datasets, including an imaged-based dataset. …

Telemetry Data Mining For Unmanned Aircraft Systems, Li Yu

Theses and Dissertations

With ever more data becoming available to the US Air Force, it is vital to develop effective methods to leverage this strategic asset. Machine learning (ML) techniques present a means of meeting this challenge, as these tools have demonstrated successful use in commercial applications. For this research, three ML methods were applied to a unmanned aircraft system (UAS) telemetry dataset with the aim of extracting useful insight related to phases of flight. It was shown that ML provides an advantage in exploratory data analysis and as well as classification of phases. Neural network models demonstrated the best performance with over …

Prediction Of Body Fat Percentage Based On Anthropometric Measurements Using Data Mining Approach, Hamsa Amro, Prof. Mohammed Awad

Journal of the Arab American University مجلة الجامعة العربية الامريكية للبحوث

In recent years, heart disease, diabetes, and some types of cancers have been reported as some main causes of death in most countries of the world, and obesity, which is often attributed to excess body fat, is one of the most common risk factors for these diseases. To make the vast amounts of data produced by health care information systems useful to the potential, the researchers applied knowledge discovery through predictive modeling. This study used anthropometric measurements as input data to different data mining techniques to predict body fat percentage. Fisher’s Method of Scoring was used to select the most …

Messiness: Automating Iot Data Streaming Spatial Analysis, Christopher White, Atilio Barreda Ii

Publications and Research

The spaces we live in go through many transformations over the course of a year, a month, or a day; My room has seen tremendous clutter and pristine order within the span of a few hours. My goal is to discover patterns within my space and formulate an understanding of the changes that occur. This insight will provide actionable direction for maintaining a cleaner environment, as well as provide some information about the optimal times for productivity and energy preservation.

Using a Raspberry Pi, I will set up automated image capture in a room in my home. These images will …

Data-Driven Operational And Safety Analysis Of Emerging Shared Electric Scooter Systems, Qingyu Ma

Computational Modeling & Simulation Engineering Theses & Dissertations

The rapid rise of shared electric scooter (E-Scooter) systems offers many urban areas a new micro-mobility solution. The portable and flexible characteristics have made E-Scooters a competitive mode for short-distance trips. Compared to other modes such as bikes, E-Scooters allow riders to freely ride on different facilities such as streets, sidewalks, and bike lanes. However, sharing lanes with vehicles and other users tends to cause safety issues for riding E-Scooters. Conventional methods are often not applicable for analyzing such safety issues because well-archived historical crash records are not commonly available for emerging E-Scooters.

Perceiving the growth of such a micro-mobility …

Identification Of Factors Associated With Fume Events Using Text Mining And Data Mining Methods, Mary B. O'Connor

Doctoral Dissertations and Master's Theses

Pilots, flight attendants, and passengers can be exposed to toxic compounds when the bleed air that supplies the cabin and flight deck is contaminated with pyrolyzed hydraulic fluid or oil from turbine jet engines. These fume events occur sporadically and can result in acute or chronic exposure in air crews and can have catastrophic consequences if flight crew members become impaired or incapacitated. The purpose of this research was to explore unstructured textual data and identify important factors associated with these events. Models using machine learning algorithms were developed and tested using variables gleaned from the text mining process and …

Exploring The Use Of Social Media To Infer Relationships Between Demographics, Psychographics And Vaccine Hesitancy, Abhimanyu Kapur

Computer Science Senior Theses

The growing popularity of social media as a platform to obtain information and share one's opinions on various topics makes it a rich source of information for research. In this study, we aimed to develop a framework to infer relationships between demographic and psychographic characteristics of a user and their opinion on a specific narrative - in this case, their stance on taking the COVID-19 vaccine. Twitter was the chosen platform due to the large USA user base and easily available data. Demographic traits included Race, Age, Gender, and Human-vs-Organization Status. Psychographic traits included the Big Five personality traits (Conscientiousness, …

Statistical Analysis Of 2017-18 Premier League Match Statistics Using A Regression Analysis In R, Bergen Campbell

Undergraduate Theses and Capstone Projects

This thesis analyzes the correlation between a team’s statistics and the success of their performances, and develops a predictive model that can be used to forecast final season results for that team. Data from the 2017-2018 Premier League season is to be gathered and broken down within R to highlight what factors and variables are largely contributing to the success or downfall of a team. A multiple linear regression model and stepwise selection process is then used to include any factors that are significant in predicting in match results.

The predictions about the 17-18 season results based on the model …

Big Data: Ethics, Resources, And Potential Collaboration, Matthew Zook

Geography Presentations

This presentation goes over 10 simple rules for responsible big data research.

A Review And Evaluation Of Techniques For Improved Feature Detection In Mass Spectrometry Data, Annika R. Tostengard, Rob Smith

Graduate Student Theses, Dissertations, & Professional Papers

Mass spectrometry (MS) is used in analysis of chemical samples to identify the molecules present and their quantities. This analytical technique has applications in many fields, from pharmacology to space exploration. Its impacts on medicine are particularly significant, since MS aids in the identification of molecules associated with disease; for instance, in proteomics, MS allows researchers to identify proteins that are associated with autoimmune disorders, cancers, and other conditions. Since the applications are so wide-ranging and the tool is ubiquitous across so many fields, it is critical that the analytical methods used to collect data are sound.

Data analysis in …

Binary Black Widow Optimization Algorithm For Feature Selection Problems, Ahmed Al-Saedi

Theses and Dissertations (Comprehensive)

This thesis addresses feature selection (FS) problems, which is a primary stage in data mining. FS is a significant pre-processing stage to enhance the performance of the process with regards to computation cost and accuracy to offer a better comprehension of stored data by removing the unnecessary and irrelevant features from the basic dataset. However, because of the size of the problem, FS is known to be very challenging and has been classified as an NP-hard problem. Traditional methods can only be used to solve small problems. Therefore, metaheuristic algorithms (MAs) are becoming powerful methods for addressing the FS problems. …

Hierarchical Aggregation Of Multidimensional Data For Efficient Data Mining, Safaa Khalil Alwajidi

Dissertations

Big data analysis is essential for many smart applications in areas such as connected healthcare, intelligent transportation, human activity recognition, environment, and climate change monitoring. Traditional data mining algorithms do not scale well to big data due to the enormous number of data points and the velocity of their generation. Mining and learning from big data need time and memory efficiency techniques, albeit the cost of possible loss in accuracy. This research focuses on the mining of big data using aggregated data as input. We developed a data structure that is to be used to aggregate data at multiple resolutions. …

Open Data, Collaborative Working Platforms, And Interdisciplinary Collaboration: Building An Early Career Scientist Community Of Practice To Leverage Ocean Observatories Initiative Data To Address Critical Questions In Marine Science, Robert M. Levine, Kristen E. Fogaren, Johna E. Rudzin, Christopher J. Russoniello, Dax C. Soule, Justine M. Whitaker

Publications and Research

Ocean observing systems are well-recognized as platforms for long-term monitoring of near-shore and remote locations in the global ocean. High-quality observatory data is freely available and accessible to all members of the global oceanographic community—a democratization of data that is particularly useful for early career scientists (ECS), enabling ECS to conduct research independent of traditional funding models or access to laboratory and field equipment. The concurrent collection of distinct data types with relevance for oceanographic disciplines including physics, chemistry, biology, and geology yields a unique incubator for cutting-edge, timely, interdisciplinary research. These data are both an opportunity and an incentive …

Predicting Attrition - A Driver For Creating Value, Realizing Strategy, And Refining Key Hr Processes, Kevin Mendonsa, Maureen Stolberg, Vivek Viswanathan, Scott Crum

SMU Data Science Review

Talent is the most important asset for every organization's success. While attrition (or churn) and turnover can refer to both employees and customers, this paper will focus on employee attrition only. Many organizations accept attrition as an inevitable cost of doing business and do nothing to adopt or implement mitigating strategies to combat it. World class companies on the other hand take deliberate measures to understand, control and mitigate attrition (turnover) at every stage. Unmitigated attrition can have a devastating effect on an organization's bottom line and market value. In addition, the “invisible" costs of low employee morale, reduced employee …

Statistical Machine Learning Methods For Mining Spatial And Temporal Data, Fei Tan

Dissertations

Spatial and temporal dependencies are ubiquitous properties of data in numerous domains. The popularity of spatial and temporal data mining has thus grown with the increasing prevalence of massive data. The presence of spatial and temporal attributes not only provides complementary useful perspectives, but also poses new challenges to the representation and integration into the learning procedure. In this dissertation, the involved spatial and temporal dependencies are explored with three genres: sample-wise, feature-wise, and target-wise. A family of novel methodologies is developed accordingly for the dependency representation in respective scenarios.

First, dependencies among discrete, continuous and repeated observations are studied …

So What Are You Going To Do With That? The Promises And Pitfalls Of Massive Data Sets, Sigrid Anderson Cordell, Melissa Gomis

University of Nebraska-Lincoln Libraries: Faculty Publications

This article takes as its case study the challenge of data sets for text mining, sources that offer tremendous promise for digital humanities (DH) methodology but present specific challenges for humanities scholars. These text sets raise a range of issues: What skills do you train humanists to have? What is the library’s role in enabling and supporting use of those materials? How do you allocate staff? Who oversees sustainability and data management? By addressing these questions through a specific use case scenario, this article shows how these questions are central to mapping out future directions for a range of library …

Short Distance Structure, L. B. Weinstein, S. E. Kuhn

Physics Faculty Publications

Over the last fifteen years of operation, the Jefferson Lab CLAS Collaboration has performed many experiments using nuclear targets. Because the CLAS detector has a very large acceptance and because it used a very open (i.e., nonspecific) trigger, there is a vast amount of data on many different reaction channels yet to be analyzed.

The goal of the Jefferson Lab Nuclear Data Mining grant was to (1) collect the data from nuclear target experiments using the CLAS detector, (2) collect the associated cuts and corrections used to analyze that data, (3) provide non-expert users with a software environment for easy …