Data Science Commons^™

The Effects Of Individual Differences, Non‐Stationarity, And The Importance Of Data Partitioning Decisions For Training And Testing Of Eeg Cross‐Participant Models, Alexander J. Kamrud, Brett J. Borghetti, Christine M. Schubert Kabban

Faculty Publications

EEG-based deep learning models have trended toward models that are designed to perform classification on any individual (cross-participant models). However, because EEG varies across participants due to non-stationarity and individual differences, certain guidelines must be followed for partitioning data into training, validation, and testing sets, in order for cross-participant models to avoid overestimation of model accuracy. Despite this necessity, the majority of EEG-based cross-participant models have not adopted such guidelines. Furthermore, some data repositories may unwittingly contribute to the problem by providing partitioned test and non-test datasets for reasons such as competition support. In this study, we demonstrate how improper …

Research Focus: Pattern Recognition

In The Loop

A CDM health informatics team joins a global race to advance COVID-19 diagnostics through X-ray insights.

Spring 2021

In The Loop

IRL Programs Debut; Short & Sweet Pandemic Film Fest; New MS in Artificial Intelligence; Virtual Experts Talks; DePaul Trustee Producing Documentary; DemonHacks Hackathon; Silicon Valley 2.0: The DePaul Innovation Development Lab connects students and companies to spark solutions to technological challenges; Code Warrior: Ovetta Sampson has risen to challenges in digital design, journalism and athletics while inspiring others; Pattern Recognition: A CDM health informatics team joins a global race to advance COVID-19 diagnostics through X-ray insights

Application Of Randomness In Finance, Jose Sanchez, Daanial Ahmad, Satyanand Singh

Publications and Research

Brownian Motion which is also considered to be a Wiener process and can be thought of as a random walk. In our project we had briefly discussed the fluctuations of financial indices and related it to Brownian Motion and the modeling of Stock prices.

Profile Modeling In Hierarchical Deep Architecture By Mutual Support, Honglai Peng, Meng Han, Jing (Selena) He

Master of Science in Computer Science Theses

Despite significant advances in the field of face analysis over last decade, the current studies are still limited to specific face computation tasks using deep learning approaches. In this paper, we propose an end-to-end hierarchical deep learning structure, called Multi-Features Convolutional Neural Networks (MFCNN), which can comprehensively implement face analysis including age, gender, race and emotion. Moreover, we take the advantages of the mutual support among different facial features from individual tasks to improve the performance of our model. We also contribute one all-labeling dataset called Multiple Facial Features Computation (MFFC) based on Apparent-age-V2 dataset. Firstly, we train four different …

Assessing The Re-Identification Risk In Ecg Datasets And An Application Of Privacy Preserving Techniques In Ecg Analysis, Arin Ghazarian

Computational and Data Sciences (PhD) Dissertations

In this work, first we investigate the use of ECG signal as a biometric in human identification systems using deep learning models. We train convolutional neural network models on ECG samples from approximately 81k patients. Our models achieved an over-all accuracy of 95.69%. Further, we assess the accuracy of our ECG identification model for distinct groups of patients with particular heart conditions and combinations of such conditions. For example, we observed that the identification accuracy was the highest (99.7%) for patients with both ST changes and supraventricular tachycardia. On the other hand, we also found that the identification rate was …

Using Deep Learning For Children Brain Image Analysis, Rafael Toche Pizano

Computer Science and Computer Engineering Undergraduate Honors Theses

Analyzing the correlation between brain volumetric/morphometry features and cognition/behavior in children is important in the field of pediatrics as identifying such relationships can help identify children who may be at risk for illnesses. Understanding these relationships can not only help identify children who may be at risk of illnesses, but it can also help evaluate strategies that promote brain development in children. Currently, one way to do this is to use traditional statistical methods such as a correlation analysis, but such an approach does not make it easy to generalize and predict how brain volumetric/morphometry will impact cognition/behavior. One of …

Semantic Classification Of Multidialectal Arabic Social Media, Tom Rishel

Dissertations

Arabic is one of the most widely used languages in the world, but due in part to its morphological and syntactic richness, resources for automated processing of Arabic are relatively rare. Arabic takes three primary forms: Classical Arabic as seen in the Qur’an and other classical texts; Modern Standard Arabic (MSA) as seen in newspapers, formal documents, and other written text intended for widespread distribution; and dialectal Arabic as used in common speech and informal communication. Social media posts are often written in informal language and may include non-standard spellings, abbreviations, emoticons, hashtags, and emojis. Dialectal Arabic is commonly used …

Improving Bayesian Graph Convolutional Networks Using Markov Chain Monte Carlo Graph Sampling, Aneesh Komanduri

Computer Science and Computer Engineering Undergraduate Honors Theses

In the modern age of social media and networks, graph representations of real-world phenomena have become incredibly crucial. Often, we are interested in understanding how entities in a graph are interconnected. Graph Neural Networks (GNNs) have proven to be a very useful tool in a variety of graph learning tasks including node classification, link prediction, and edge classification. However, in most of these tasks, the graph data we are working with may be noisy and may contain spurious edges. That is, there is a lot of uncertainty associated with the underlying graph structure. Recent approaches to modeling uncertainty have been …

Using Large Pre-Trained Language Models To Track Emotions Of Cancer Patients On Twitter, Will Baker

Computer Science and Computer Engineering Undergraduate Honors Theses

Twitter is a microblogging website where any user can publicly release a message, called a tweet, expressing their feelings about current events or their own lives. This candid, unfiltered feedback is valuable in the spaces of healthcare and public health communications, where it may be difficult for cancer patients to divulge personal information to healthcare teams, and randomly selected patients may decline participation in surveys about their experiences. In this thesis, BERTweet, a state-of-the-art natural language processing (NLP) model, was used to predict sentiment and emotion labels for cancer-related tweets collected in 2019 and 2020. In longitudinal plots, trends in …

Using Deep Learning To Analyze Materials In Medical Images, Carson Molder

Computer Science and Computer Engineering Undergraduate Honors Theses

Modern deep learning architectures have become increasingly popular in medicine, especially for analyzing medical images. In some medical applications, deep learning image analysis models have been more accurate at predicting medical conditions than experts. Deep learning has also been effective for material analysis on photographs. We aim to leverage deep learning to perform material analysis on medical images. Because material datasets for medicine are scarce, we first introduce a texture dataset generation algorithm that automatically samples desired textures from annotated or unannotated medical images. Second, we use a novel Siamese neural network called D-CNN to predict patch similarity and build …

Optimal Analytical Methods For High Accuracy Cardiac Disease Classification And Treatment Based On Ecg Data, Jianwei Zheng

Computational and Data Sciences (PhD) Dissertations

This work constitutes six projects. In the first project, a newly inaugurated research database for 12-lead electrocardiogram signals was created under the auspices of Chapman University and Shaoxing People's Hospital (Shaoxing Hospital Zhejiang University School of Medicine). This database aims to enable the scientific community in conducting new studies on arrhythmia and other cardiovascular conditions. In the second project, we created a new 12-lead ECG database under the auspices of Chapman University and Ningbo First Hospital of Zhejiang University that aims to provide high quality data enabling detection of the distinctions between idiopathic ventricular arrhythmia from right ventricular outflow tract …

A Smarter Way To Manage Mass Transit In A Smart City: Rail Network Management At Singapore’S Land Transport Authority, Steven M. Miller, Thomas H. Davenport

Research Collection School Of Computing and Information Systems

There is no widely agreed upon definition of a supposed “Smart City.” Yet, when you see city employees — in this case city-state employees — working in what are obviously smarter ways, “you know it when you see it.” One such example of a smarter way to work in a smart city setting is the way that employees of the Land Transport Authority (LTA) in Singapore are using a new generation of data driven, AI-enabled support systems to manage the city’s urban rail network. We spoke to LTA officers Kong Wai, Ho (Director of Integrated Operations and Planning) and Chris …

Thruster Communication For Subsurface Environments; Turning Waste Noise Into Useful Data, Stephen Cronin

Doctoral Dissertations and Master's Theses

Acoustic communication serves as one of the primary means of wirelessly communicating underwater. Whereas much of the developments in the field of wireless communication have focused on radio frequency technology, water highly absorbs radio waves rendering the link not feasible for most all subsurface operations. While acoustic links have enabled new capabilities for systems operating in this challenging environment, it has yet to reach the commodity availability of radio systems, meaning that an entire class of small, low-cost systems have been unable to make use of these links. The systems in question are primarily autonomous underwater vehicles (AUVs), as they …

Visual Analysis Of Historical Lessons Learned During Exercises For The United States Air Force Europe (Usafe), Samantha O'Rourke

Theses/Capstones/Creative Projects

Within the United States Air Force, there are repeated patterns of differences observed during exercises. After an exercise is completed, forms are filled out detailing observations, successes, and recommendations seen throughout the exercise. At the most, no two reports are identical and must be analyzed by personnel and then categorized based on common themes observed. Developing a computer application will greatly reduce the time and resources used to analyze each After Action Report. This application can visually represent these observations and optimize the effectiveness of these exercises. The visualization is done through graphs displaying the frequency of observations and recommendations. …

Application Of Machine Learning Techniques To Forecast Harmful Algal Blooms In Gulf Of Mexico, Bala Tripura Sundari Yerrapothu

Master's Theses

The Harmful Algal Blooms (HABs) forecast is crucial for the mitigation of health hazards and to inform actions for the protection of ecosystems and fisheries in the Gulf of Mexico (GoM). For the sake of simplicity of our application we assume ocean color satellite imagery from the National Oceanic and Atmospheric Administration as a proxy for HABs.

In this study we use a deep neural network trained on the 2-Dimensional time series proxy data to provide a forecast of the HABs’ manifestations in the GoM.Our approach analyzes between both spatial and temporal features simultaneously. In addition, the network also helps …

Benefits Of The Snakemake Workflow Management Software In Comparision To Traditional Programming (Presentation), Josh Loecker

Honors Capstone Projects

No abstract provided.

Machine Learning Approaches To Dribble Hand-Off Action Classification With Sportvu Nba Player Coordinate Data, Dembe Stephanos

Electronic Theses and Dissertations

Recently, strategies of National Basketball Association teams have evolved with the skillsets of players and the emergence of advanced analytics. One of the most effective actions in dynamic offensive strategies in basketball is the dribble hand-off (DHO). This thesis proposes an architecture for a classification pipeline for detecting DHOs in an accurate and automated manner. This pipeline consists of a combination of player tracking data and event labels, a rule set to identify candidate actions, manually reviewing game recordings to label the candidates, and embedding player trajectories into hexbin cell paths before passing the completed training set to the classification …

Discovering Kepler’S Third Law From Planetary Data, Boyan Kostadinov, Satyanand Singh

Publications and Research

In this data-inspired project, we illustrate how Kepler’s Third Law of Planetary Motion can be discovered from fitting a power model to real planetary data obtained from NASA, using regression modeling. The power model can be linearized, thus we can use linear regression to fit the model parameters to the data, but we also show how a non-linear regression can be implemented, using the R programming language. Our work also illustrates how the linear least squares used for fitting the power model can be implemented in Desmos, which could serve as the computational foundation for this project at a lower …

Using Deep Learning To Automate The Diagnosis Of Skin Melanoma, Akhil Reddy Alasandagutti

Honors Theses

Machine learning and image processing techniques have been widely implemented in the field of medicine to help accurately diagnose a multitude of medical conditions. The automated diagnosis of skin melanoma is one such instance. However, a majority of the successful machine learning models that have been implemented in the past have used deep learning approaches where only raw image data has been utilized to train machine learning models, such as neural networks. While they have been quite effective at predicting the condition of these lesions, they lack key information about the images, such as clinical data, and features that medical …

A Fully-Automated, Deep Learning-Based Framework For Ct-Based Localization, Segmentation, Verification And Planning Of Metastatic Vertebrae, Tucker Netherton, Tucker James Netherton

Dissertations and Theses (Open Access)

Palliative radiotherapy is an effective treatment for the palliation of symptoms caused by vertebral metastases. Visible evidence of disease is localized on medical images as part of the treatment planning process. However, complicating factors such as time pressures, anatomic variants in the spine, and similarities in adjacent vertebrae are associated with wrong level treatments of the spine. In addition, erroneous manual contouring of anatomic structures is a major failure mode in radiotherapy treatment planning.

The purpose of this study is to mitigate the challenges associated with treatment planning of the spine by automating the treatment planning process for three-dimensional conformal …

Improving Treatment Of Local Liver Ablation Therapy With Deep Learning And Biomechanical Modeling, Brian Anderson, Kristy Brock, Laurence Court, Carlos Eduardo Cardenas, Erik Cressman, Ankit Patel

Dissertations and Theses (Open Access)

In the United States, colorectal cancer is the third most diagnosed cancer, and 60-70% of patients will develop liver metastasis. While surgical liver resection of metastasis is the standard of care for treatment with curative intent, it is only avai lable to about 20% of patients. For patients who are not surgical candidates, local percutaneous ablation therapy (PTA) has been shown to have a similar 5-year overall survival rate. However, PTA can be a challenging procedure, largely due to spatial uncertainties in the localization of the ablation probe, and in measuring the delivered ablation margin.

For this work, we hypothesized …

Statistical Analysis Of 2017-18 Premier League Match Statistics Using A Regression Analysis In R, Bergen Campbell

Undergraduate Theses and Capstone Projects

This thesis analyzes the correlation between a team’s statistics and the success of their performances, and develops a predictive model that can be used to forecast final season results for that team. Data from the 2017-2018 Premier League season is to be gathered and broken down within R to highlight what factors and variables are largely contributing to the success or downfall of a team. A multiple linear regression model and stepwise selection process is then used to include any factors that are significant in predicting in match results.

The predictions about the 17-18 season results based on the model …

Novel Applications Of Statistical And Machine Learning Methods To Analyze Trial-Level Data From Cognitive Measures, Chelsea Parlett

Computational and Data Sciences (PhD) Dissertations

Many cognitive tasks and measures can benefit from trial-level analyses including Item Response Theory models as well as other Bayesian and Machine Learning models. Specifically, this dissertation focuses mainly on task-based measures of metamemory and how within-set variability as well as item-level characteristics can improve the inferences researchers make about these measures.First, a clustering analysis of judgements of learning across a task is examined in order to detect different participant strategies on a metamemory task and whether strategy use differs by age. Second, the benefits of using item response theory models to analyze both individual and item-level differences in metamemory …

Advancing The Use Of Quality Control Tools For High-Density Data In Modern Manufacturing, Romina Dastoorian

Dissertations

In modern manufacturing, advanced metrology systems are continually being incorporated into quality control (QC) systems to provide high-density (HD) datasets. These datasets can contain millions of measurements that can be used to represent a part’s whole geometry. While integrating HD datasets into QC systems has brought several opportunities to enhance the performance of QC systems, it has resulted in new challenges in this area as well. While significant amounts of research have been performed in this area, the QC research community still strives to tackle these challenges. This study identifies key challenges regarding incorporating HD datasets into QC systems. Specifically, …

On Prediction Of Early Signs Of Alzheimer’S— A Machine Learning Framework, Abdalrahman Alsaedi

Dissertations

Dementia is a collective term used to indicate a loss of memory functions with the presence of at least one additional loss of a major cognitive ability that hinders a person’s previous level of functioning. Studies show that dementia is highly age- associated and that the most common cause of dementia is Alzheimer’s disease. Early recognition of Alzheimer’s disease, before irreversible damage to the brain has already occurred, is paramount to slowing or preventing the disease. Therefore, algorithms for the prediction of early signs of dementia are essential. Machine learning approach has been reported to use several data sources such …

382— Wiyn Open Cluster Study: Ubvri Photometry Of Ngc 2204, Kylie Snyder, Dante Scarazzini

GREAT Day Posters

The purpose of this project was to study the open star cluster NGC2204 using images taken at Kitt Peak National Observatory using the WIYN 0.9m telescope. These images were analyzed photometrically with the intention of determining the reddening, metallicity, age, and distance modulus of the star cluster. Each image was analyzed using software that determined the point spread function and applied that function to determine the magnitude of each star in that image. These magnitudes were taken for each filter, UBVRI, and then combined and averaged to create a single catalog. Standard stars, taken on the same night, were used …

An Exploratory Analysis Of The Bgsu Learning Commons Student Usage Data, Emily Eskuri

Honors Projects

The purpose of this study was to explore past student usage data in individualized tutoring sessions from the Learning Commons from two academic years. The Bowling Green State University (BGSU) Learning Commons is a learning assistance center that offers various services, such as individualized tutoring, math assistance, writing assistance, study hours, and academic coaching. There have been limited research studies into how big data and analytics can have an impact in higher education, especially research utilizing predictive analytics.

This project applied analytics to individualized tutoring data in the Learning Commons to create a better understanding of why those trends happen …

Unsupervised And Supervised Learning For Rna-Protein Interactions And Annotations, Kateland Sipe

Honors Projects

This project analyzed the base and amino acid interactions and annotations through the use of unsupervised and supervised learning techniques. For unsupervised learning, clustering found the data was not able to be distinguished into clear groups which matched the original annotations through kmeans clustering and hierarchical clustering. For supervised learning, the use of random forest, glmnet, and deep learning neural networks were successful in creating accurate predictions. However, machine learning likely will not be able to replace the original complex program, but could be used for possible simplification.

Integrating Common Data Analytics Tools Into Non-Technical Undergraduate Curricula, Kurt Kirstein

All Faculty Scholarship for the College of Education and Professional Studies

Aside from statistics courses, accessible data analytics skills are often excluded from traditional non-technical university programs. These are topics that are typically the domain of programs that focus on math, statistics and computer science. Yet the need for these skills in non-technical disciplines is changing. A rapid expansion of data-related processes in organizations of many types requires individuals who have at least a working knowledge of common analytic tools. This article briefly describes three categories of data analytics tools that can be useful for graduates in any discipline. The first category covers descriptive tools that allow students to learn what …