Data Science Commons^™

Towards Source-Aligned Variational Models For Cross-Domain Recommendation, Aghiles Salah, Thanh-Binh Tran, Hady W. Lauw

Research Collection School Of Computing and Information Systems

Data sparsity is a long-standing challenge in recommender systems. Among existing approaches to alleviate this problem, cross-domain recommendation consists in leveraging knowledge from a source domain or category (e.g., Movies) to improve item recommendation in a target domain (e.g., Books). In this work, we advocate a probabilistic approach to cross-domain recommendation and rely on variational autoencoders (VAEs) as our latent variable models. More precisely, we assume that we have access to a VAE trained on the source domain that we seek to leverage to improve preference modeling in the target domain. To this end, we propose a model which learns …

Science Is For Everybody: A Resource For Understanding Glaciers, Climate, And Modeling, Emma Watson

Independent Study Project (ISP) Collection

Climate change threatens the existence of glaciers worldwide. In order to properly interact with these changing systems, we must first understand them. Glacial models provide an excellent way to do this; however, the language and mathematical concepts used in their creation is generally inaccessible to a common audience. This project presents an online resource for a general audience to interact with climate science, glaciology, and glacial modeling. Long term goals for the project include the incorporation of a glacial model of Drangajökull, Vestfirðir, NW Iceland. As such, focus for the project includes a literature review of glaciers, Drangajökull in particular, …

The Labyrinth Of Data Collection For Humanitarian Project Funding And Implementation, Maria Alejandra Pulido

Independent Study Project (ISP) Collection

My research concentrates on four NGOs: IOM, IDMC, JIPS, and OCHA which use different tools to collect data and translate the information into evidence for data-driven decision making (DDDM) for the implementation of humanitarian assistance projects. I focus on the importance, advantages, and various data collection tools which help ameliorate the humanitarian sector since it does not have a current professionalized path to enter the workforce. I incorporated four interviews, attended two conferences and analyzed multiple online sources during my project.

The Classification Of Basket Neural Cells In The Mammalian Neocortex, Sreya Pudi

Senior Theses

Basket neuronal cells of the mammalian neocortex have been classically categorized into two or more groups. Originally, it was thought that the large and small types are the naturally occurring groups that emerge from reasons that relate to neurobiological function and anatomical position. Later, a study based on anatomical and physiological features of these neurons introduced a third type, the net basket cell which is intermediate in size as compared to the large and small types. In this study, multivariate analysis was used to test the hypothesis that the large and small types are morphologically distinct groups. The results of …

Data Analysis Of The “2021 Covid, Equity And Social Justice Showcase”, Cristo Leon, James Lipuma

STEM Month

During the “2021 STEM for All Video Showcase” (NSF, 2021) funded by the National Science Foundation, 287 short videos showcasing federally funded projects aimed at improving STEM and CS education were presented.

The videos highlight strategies to engage students during COVID-19 and address educational inequities.

Deep Fakes: The Algorithms That Create And Detect Them And The National Security Risks They Pose, Nick Dunard

James Madison Undergraduate Research Journal (JMURJ)

The dissemination of deep fakes for nefarious purposes poses significant national security risks to the United States, requiring an urgent development of technologies to detect their use and strategies to mitigate their effects. Deep fakes are images and videos created by or with the assistance of AI algorithms in which a person’s likeness, actions, or words have been replaced by someone else’s to deceive an audience. Often created with the help of generative adversarial networks, deep fakes can be used to blackmail, harass, exploit, and intimidate individuals and businesses; in large-scale disinformation campaigns, they can incite political tensions around the …

Infer: An R Package For Tidyverse-Friendly Statistical Inference, Simon P. Couch, Andrew P. Bray, Chester Ismay, Evgeni Chasnovski, B. Baumer, Mine Cetinkaya-Rundel

Statistical and Data Sciences: Faculty Publications

infer implements an expressive grammar to perform statistical inference that adheres to the tidyverse design framework (Wickham et al., 2019). Rather than providing methods for specific statistical tests, this package consolidates the principles that are shared among common hypothesis tests and confidence intervals into a set of four main verbs (functions), supplemented with many utilities to visualize and extract value from their outputs.

The Concurrence Of Dna Methylation And Demethylation Is Associated With Transcription Regulation, Jiejun Shi, Jianfeng Xu, Yiling Elaine Chen, Jason Sheng Li, Ya Cui, Lanlan Shen, Jingyi Jessica Li, Wei Li

Children’s Nutrition Research Center Staff Publications

The mammalian DNA methylome is formed by two antagonizing processes, methylation by DNA methyltransferases (DNMT) and demethylation by ten-eleven translocation (TET) dioxygenases. Although the dynamics of either methylation or demethylation have been intensively studied in the past decade, the direct effects of their interaction on gene expression remain elusive. Here, we quantify the concurrence of DNA methylation and demethylation by the percentage of unmethylated CpGs within a partially methylated read from bisulfite sequencing. After verifying 'methylation concurrence' by its strong association with the co-localization of DNMT and TET enzymes, we observe that methylation concurrence is strongly correlated with gene expression. …

Comprehensive Characterization Of Covid-19 Patients With Repeatedly Positive Sars-Cov-2 Tests Using A Large Us Electronic Health Record Database, Xiao Dong, Yujia Zhou, Xiao-Ou Shu, Elmer V Bernstam, Rebecca Stern, David M Aronoff, Hua Xu, Loren Lipworth

Faculty, Staff and Student Publications

In the absence of genome sequencing, two positive molecular tests for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) separated by negative tests, prolonged time, and symptom resolution remain the best surrogate measure of possible reinfection. Using a large electronic health record database, we characterized clinical and testing data for 23 patients with repeatedly positive SARS-CoV-2 PCR test results ≥60 days apart, separated by ≥2 consecutive negative test results. The prevalence of chronic medical conditions, symptoms, and severe outcomes related to coronavirus disease 19 (COVID-19) illness were ascertained. The median age of patients was 64.5 years, 40% were Black, and 39% …

Estimation Of Conditional Power For Cluster-Randomized Trials With Interval-Censored Endpoints, Kaitlyn Cook, Rui Wang

Statistical and Data Sciences: Faculty Publications

Cluster-randomized trials (CRTs) of infectious disease preventions often yield correlated, interval-censored data: dependencies may exist between observations from the same cluster, and event occurrence may be assessed only at intermittent study visits. This data structure must be accounted for when conducting interim monitoring and futility assessment for CRTs. In this article, we propose a flexible framework for conditional power estimation when outcomes are correlated and interval-censored. Under the assumption that the survival times follow a shared frailty model, we first characterize the correspondence between the marginal and cluster-conditional survival functions, and then use this relationship to semiparametrically estimate the cluster-specific …

Detecting Stance On Covid-19 Vaccine In A Polarized Media, Rodica Ceslov

Dissertations, Theses, and Capstone Projects

The growing polarization in the United States has been widely reported. Media coverage plays an important role in shaping public opinion and influences public debates on complex and unfamiliar topics. There are some benefits to individuals and society from political polarization and conflict between opposing viewpoints. However, recent research has primarily highlighted the negative consequences of polarization which reached an all-time high. One such topic is the Covid-19 vaccine which was developed in record time, and the public learned about its safety and possible risks through the media coverage.

In this capstone, we examine U.S. news media coverage on the …

Making Space For Unquantifiable Data: Hand-Drawn Data Visualization, Eva Sibinga

Dissertations, Theses, and Capstone Projects

This project makes space for personal “data” around labor and care, prompting users to consider the concrete and abstract (quantifiable and unquantifiable) forms labor and care take in their lives. The interactive, subjective data visualization uses hand-drawn visual elements to foreground that data about care and human interaction will always be ambiguous and complex, that they may never be satisfactorily or universally quantified, and that they will always be out of reach of perfect categorization.

The project provides an alternative to prescriptive truth-telling with data. Instead of using a dataset to provide data-driven answers and insights to users, the interactive …

Piecewise Linear Manifold Clustering, Artyom Diky

Dissertations, Theses, and Capstone Projects

This work studies the application of topological analysis to non-linear manifold clustering. A novel method, that exploits the data clustering structure, allows to generate a topological representation of the point dataset. An analysis of topological construction under different simulated conditions is performed to explore the capabilities and limitations of the method, and demonstrated statistically significant improvements in performance. Furthermore, we introduce a new information-theoretical validation measure for clustering, that exploits geometrical properties of clusters to estimate clustering compressibility, for evaluation of the clustering goodness-of-fit without any prior information about true class assignments. We show how the new validation measure, when …

Anti-Vaxxers: Parents Fighting Science, Katie West

Symposium of Student Scholars

Immunizing children helps protect the health of our community, especially those people who cannot be immunized. Yet, since 1996 after a study was released that linked autism to vaccinations, there has been a trend of parents refusing to vaccinate their children. What are the demographics of the parents who believe their children are better off without vaccines? By knowing where these parents live and what decisions they make for their children’s education, counties and medical professionals can provide education and address their concerns.

My research involves data on 116,141 kindergarten classes from 2000-2015 in California. The two vaccine exemption options …

Opioid Abuse: Are Doctors Creating The Problem?, Nguyen Tran

Symposium of Student Scholars

Opioid abuse and overdose are serious health problems in the United States. Current research has concentrated on the treatment and prevention of opioid abuse. Using data from the Controlled Substance Utilization Review and Evaluation System (CURES) for California zip codes, my research focuses on the causes of opioid overdose by considering the relationships between the following variables within each zip code: population size, average number of prescriptions per doctor, percentage of people who receive opioid prescriptions, percentage of people receiving the same prescription drug from 3 or more doctors, average number of opioid pills per prescription and number of people …

Market Research: How To Keep And Gain Customers, Chris Mccall

Symposium of Student Scholars

Customer-centered market research is essential to the creation and management of successful marketing campaigns. A company that understands their customers will be able to provide those customers with products and services that fit their needs better than the competition, and ultimately increase profits. My research focuses on a database containing customer information for a telecommunications company called Telco. Within this research, I will focus on a number of customer attributes including demographics, services provided, payment methods, contract lengths, monthly charges, and tenure with the company. Considering how these attributes relate to one another will give me a better understanding of …

Food Deserts: Hungry For Answers, Lawren Cumberbatch

Symposium of Student Scholars

In 2010, the United States Department of Agriculture (USDA) reported that 23.5 million people in the United States live in food deserts. As defined by the USDA, a “food desert” is a neighborhood that lacks healthy food sources. This can be measured by distance to a store, number of stores in an area, individual-level resources such as family income or vehicle availability, and neighborhood-level resources such as availability of public transportation. Past research provides evidence that food deserts are especially likely to occur in communities heavily populated by minorities. As a Black Indian pre-med student aiming to join the world …

Determining Malignancy: Can Mammogram Results Help Predict The Diagnosis Of Breast Tumors?, Taylor Behrens

Symposium of Student Scholars

Even with advancements in treatment and preventative care, breast cancer remains an epidemic claiming more than 40,000 American male and female lives each year. The mammogram dataset that I am analyzing was initially complied in the early 1990s by a team from the University of Wisconsin - Madison. Past research diagnoses breast cancer from fine-needle aspirates. My research focuses on predicting whether we can determine breast cancer diagnoses without the use of invasive procedures and, in particular, whether we can predict breast cancer based on mammogram data. Do measures of gray-scale texture, radius, concavity, perimeter, compactness, area, and smoothness of …

Accidental Overdoses: Insights To Aid In Prevention, Annabel Nganga

Symposium of Student Scholars

Having lost a friend six years ago to an accidental cocaine overdose, I am very passionate about spreading awareness of accidental drug overdoses that have affected thousands of families countrywide. According to past research, deaths resulting from opiates specifically have been on the rise, and a significant number of deaths in the United States for those below fifty years are caused by drug overdoses. Data exists indicating which states have more overdoses. The data set I will be using includes variables on race, sex, age, drug with which person overdosed, location of the overdose, ultimate cause of death and year …

Death By Police: When “Protecting And Serving” Goes Wrong, Hesper Mallis

Symposium of Student Scholars

The recent cases of law enforcement using lethal force in the United States have gained massive public attention. My dataset is from the Mapping Police Violence website. The website’s focus was to create a heat map to display where police killings occurred most frequently. The website has a dataset with information on 7,664 deaths of suspects. The variables in the dataset include age, sex and race of the suspect; geographic location; alleged threat level; alleged weapon; cause of death; and criminal charges against the officer. In addition, the variables include whether the individual had a mental illness, was armed or …

Are There Predictors Of A Running Back’S Success?, Joshua Price

Symposium of Student Scholars

People who analyze football have concentrated in the past on a running back’s 40-yard dash, shuffle, broad jump, vertical jump, and bench press measures. My research will test if the following variables can predict a running back’s success in the NFL: height, weight, conference, offensive line ranking for their team, the running back’s total yards for the season, their average yards for each attempt, the number of times the running back has entered the end zone for a touchdown that season, the running back’s time average time behind the line of scrimmage (TLOS), the percentage of times the running back …

Sources And Aftermaths Of Pipeline Related Leaks And Spills, Justin Smith

Symposium of Student Scholars

The escape of oil and other hazardous materials have been shown to pollute and destroy ecosystems. As an aspiring chemist, I am adamant about the secure handling and transportation of oil and other hazardous materials. In the past, researchers have concentrated on oil’s high viscosity. Oil’s high viscosity physically smothers wildlife, affecting their ability to continue critical functions such as respiration, feeding, and thermoregulation. My research focuses on the source of these oil spills, as well as natural gas leaks, for the purpose of risk assessment. In addition, I compare recovery efforts based on the cause of the leak/spill, the …

On The Front Lines Of Fire: How Do We Save Their Lives?, Cathrine Jatta

Symposium of Student Scholars

The National Institute for Occupational Safety and Health (NIOSH) reports that the United States depends on about 1.1 million firefighters to protect its citizens and property from fire. NIOSH adds that approximately 336,000 are career firefighters; 812,000 are volunteers; and 80 to 100 die in the line of duty each year. NIOSH investigates each fatality individually for the cause and prevention. In contrast, my research will look at a complete dataset of 2005 firefighter fatalities and see if any of the following variables may predict firefighter death: age, cause of death, property type, type of duty (e.g. on-duty, training), and …

Cervical Cancer: Are There Ways To Reduce The Risks?, Madelyn Dorn

Symposium of Student Scholars

History has shown us that when caught early, cervical cancer is curable. Past research has found that the sexually transmitted diseases (STDs), herpes and human papillomavirus (HPV), have been associated with cervical cancer. In contrast, my dataset on 859 women has many more STDs and lifestyle choices compiled on 36 variables. The diagnoses in the dataset are many: cervical condylomatosis, vaginal condylomatosis, vulvo-perineral condylomatosis, syphilis, pelvic inflammatory disease, genital herpes, molluscum contagiosum, acquired immune deficiency syndrome (AIDS), human immunodeficiency virus (HIV), hepatitis B, HPV, and cervical cancer. In addition to the demographic variable on age, there are many lifestyle choice …

Marijuana Arrests In Toronto Canada: A Look Into The Canadian Criminal Justice System, Steven Tully

Symposium of Student Scholars

Marijuana related drug offenses made up fifty-eight percent of all Controlled Drugs and Substances Act offenses in Canada in 2016. On October 17, 2018, Canada legalized marijuana. As part of the efforts to legalize marijuana, descriptive statistics of single variables, like the age of the arrestees and the number of people arrested per year, were reported by the Toronto Star newspaper. The dataset analyzed in this research predates the legalization of marijuana and was collected from 1997 to 2002 on 5,226 individuals arrested in Toronto, Canada for simple possession of small quantities of marijuana. When an offender was arrested for …

Who Is Next? Evaluating Factors That May Contribute To Heart Failure, Davon Broadwater

Symposium of Student Scholars

Cardiovascular diseases are the number one causes of death globally, and for African Americans those risks are even higher. As an African American university student studying Biology, I am passionate about researching the diseases that affect my race. Current research states that behavioral factors such as obesity, tobacco use, unhealthy diet, and harmful use of alcohol should be avoided. I have chosen to research predictors of what helps patients survive if they already have heart failure. Heart failure develops gradually, where the heart becomes weaker over time and has trouble pumping blood to nourish the cells in the body. Data …

Eradicating Zebra Mussels: What Works?, Elijah Davies

Symposium of Student Scholars

The invasion of U.S lakes and rivers by the invasive species of zebra mussels called Dreissena polymorpha has caused catastrophic harm to the local ecosystem by reproducing and outcompeting native mussel species as well as harm to pipes leading into water sources by binding to surfaces and reproducing to the point that the mussels clog pipes. In addition, recreation areas must be closed due to the sharp shells making areas unusable. In the past, research has focused on individual molluscicides and their eradication of zebra mussels, as well as their effect on native flora and fauna. My research will contrast …

Bias In Police Shootings: Is It Just An Opinion?, Phuong Ho

Symposium of Student Scholars

The claims of racism have drawn public attention toward police brutality and its impact on minorities. Is this just an opinion or is there any statistical evidence? Recent studies from The Atlantic have investigated the average age and ethnicity of victims from police killings in 2015-2016. As an Asian-American, I am motivated to examine the issue of police killings among races and other demographics to find any bias that is present. Using the dataset of 2,204 victims of police killings (2015-2016) collected by The Guardian, I will examine the following variables for bias: age, cause of death, armed/unarmed, race/ethnicity, and …

Do Environmental Toxins Predict Violent Crimes?, Tyler Stahl

Symposium of Student Scholars

Do chemical pollutants that persistent in the environment and bioaccumulate in the body affect human health and behavior? Could these Persistent, Bioaccumulative, and Toxic (PBT) chemicals play a role in the cause of violent crimes due to deterioration of mental and cognitive functions? In the past, Mercury, a PBT chemical, has been shown in salmon to be associated with aggression. Could similar aggression occur in humans exposed to mercury through a toxic spill? Two sources of data are utilized in this analysis. The Environmental Protection Agency’s (EPA) Annual Toxic Release Inventory publishes data on toxic releases into the environment and …

Language And Communication In Social Networks Of Information Society, Ravshan Xudoyberganov

The Light of Islam

This article analyzes the socio-philosophical and methodological aspects of the problems and prospects of language and communication in an information society. The paper notes that the communicative process is the process of formation and development of all social spheres. Language and communication provide communication between people. We know that language is of great importance as a means of communication. Language and means of communication give us a dialogic or interactive form of communication. In an information society, language and communication are a unique form of cultural, historically conditioned spiritual communication between people. The means of communication, in turn, depend on …