Data Science Commons^™

Google Search Trends To Assess Public Interest In And Concern About Vuity For Treating Presbyopia, Taku Wakabayashi, Hana A. Mansour, Robert Abishek, Jayanth Sridhar, Michael N. Cohen, David Xu, Jordan Deaner, Yoshihiro Yonekawa, Jason Hsu, Ajay E. Kuriyan

Wills Eye Hospital Papers

PURPOSE: To assess public awareness, interest, and concerns regarding Vuity (1.25% pilocarpine hydrochloride ophthalmic solution), an eye drop for the treatment of presbyopia, based on Google Trends.

METHODS: We used Google Trends that provides a relative search volume for queried terms, to evaluate searches for Vuity from June 30, 2021, to June 30, 2022, in the United States. The data for this study were downloaded on June 30, 2022. Main outcome measures were changes in relative search volumes for the terms "Vuity," "Eye drops for reading," "Eye drops for near vision," "Presbyopia," "Pilocarpine," and related popular search terms, such as …

Modeling And Estimation Of A Continuous Flexible Structure Using The Theory Of Functional Connections, Riccardo Bevilacqua

Math Department Colloquium Series

This talk presents a novel method for modeling and estimating the dynamics of a continuous structure based on a limited number of noisy measurements. The goal is reached using a Kalman filter in synergy with the recently developed mathematical framework known as the Theory of Functional Connections (TFC). The TFC allows to derive a functional expression capable of representing the entire space of the functions that satisfy a given set of linear and, in some cases, nonlinear constraints. The proposed approach exploits the possibilities offered by the TFC to derive an approximated dynamical model for the flexible system using the …

Evaluating The Impact Of An Mhealth Platform For Managing Acute Postoperative Dental Pain: Randomized Controlled Trial, Bunmi Tokede, Alfa Yansane, Ana Ibarra-Noriega, Joanna Mullins, Kristen Simmons, Nicholas Skourtes, Urvi Mehta, Sayali Tungare, David Holmes, Joel White, Muhammad Walji, Elsbeth Kalenderian

Faculty, Staff and Student Publications

BACKGROUND: Postoperative dental pain is pervasive and can affect a patient's quality of life. Adopting a patient-centric approach to pain management involves having contemporaneous information about the patient's experience of pain and using it to personalize care.

OBJECTIVE: In this study, we evaluated the use of a mobile health (mHealth) platform to collect pain-related patient-reported outcomes over 7 days after the patients underwent pain-inducing dental procedures; we then relayed the information to the dentist and determined its impact on the patient's pain experience.

METHODS: The study used a cluster-randomized experimental study design with an intervention arm where patients were prompted …

Digital Economy Enables Chinese Path To Modernization, Ying Liu, Chaochun Huang, Yongmiao Hong, Shouyang Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

Firstly, from the perspective of the internal consistency between the characteristics of Chinese path to modernization and the Internet spirit, this study reveals the importance of developing the digital economy for achieving Chinese path to modernization, and expounds the internal logic of digital economy enabling Chinese path to modernization. Then, it analyzes the challenges and problems faced by the construction of Chinese path to modernization from the aspects of the construction of basic scientific and technological capacity of digital economy, the coordination mechanism of data elements, the structural imbalance of digital development, governance system and security system. Finally, based on …

Fall Town Hall On Research Data Management, Megan Hurst, Christine Madsen, Kristi Thompson

Western Libraries Presentations

This Town Hall was held to share recommendations for Research Data Management at Western that result from a gap analysis to understand the RDM needs at Western, conducted by Athenaeum21, a strategy and technology consultancy engaged by Western for this work. The recommendations will inform the implementation of Western’s Research Data Management Strategy, which shapes Research Data Management at Western for all researchers, grant funded or not, student or faculty, regardless of discipline.

Lrtransformer: Learn-Region Transformer For Object-Agnostic Point Cloud Segmentation, Dipesh Gyawali

LSU Master's Theses

3D point cloud segmentation segments the 3D point cloud data into different regions/instances depending on their features that have numerous applications in robotics, autonomous driving, digital twinning, augmented reality, etc. The majority of the existing point cloud segmentation methods depend on class labels to identify 3D objects in the surroundings. Our work focuses on segmenting point clouds into different regions/instances in an object-agnostic manner for any number of objects in the environment. Given the point cloud, our method can segment the entire scene into multiple instances without depending on object shape and size. We leverage the power of the self-attention …

Braf D594a Mutation Defines A Unique Biological And Immuno-Modulatory Subgroup Associated With Functional Cd8+ T Cell Infiltration In Colorectal Cancer, Wenjing Li, Chenyi Zhao, Wenhui Li, Yang Gong, Kaili Ma, Yujie Lu, Xiaowei Liu, Lianjun Zhang, Feng Guo

Faculty, Staff and Student Publications

BACKGROUND: BRAF non-V600 mutation occupies a relatively small but critical subset in colorectal cancer (CRC). However, little is known about the biological functions and impacts of BRAF class III mutation in CRC. Here, we aim to explore how D594A mutation impacts on biological behaviors and immune related signatures in murine CRC cells.

METHODS: BRAF V600E (class I), G469V (class II) and D594A (class III) mutant cell lines were established based on MC38 cells. The biological behaviors of cells were evaluated in respect of cell growth, cell proliferation, cell apoptosis, cell migration and invasion by the methods of colony-forming assay, CCK-8 …

Helping Frontline Workers In Texas-A Framework For Resource Development, Karima Lalani, Meredith O'Neal, Simone Lee Joannou, Bhanumathi Gopal, Tiffany Champagne-Langabeer

Faculty, Staff and Student Publications

First responders disproportionately experience occupational stress when compared to the general population, and COVID-19 has exacerbated this stress. The nature of their duties as law enforcement officers, firefighters, and medics exposes them to repeated trauma, increasing their risk of developing a broad array of mental health issues, including post-traumatic stress disorder (PTSD), substance use disorder (SUD), and compassion fatigue. This paper describes the need for resources for frontline workers and provides a framework for creating and implementing resources. A team of interdisciplinary subject matter experts developed two major resources. The first resource was a 24/7 helpline to support first responders …

Deep Q-Learning Framework For Quantitative Climate Change Adaptation Policy For Florida Road Network Due To Extreme Precipitation, Orhun Aydin

I-GUIDE Forum

Climate change-induced extreme weather and increasing population are increasing the pressure on the global aging road networks. Adaptation requires designing interventions and alterations to the road networks that consider future dynamics of flooding and increased traffic due to the growing population. This paper introduces a reinforcement learning approach to designing interventions for Florida's road network under future traffic and climate projections. Three climate models and a tide and surge model are used to create flooding and coastal inundation projections, respectively. The optimal sequence of decisions for adapting Florida's road network to minimize flooding-related disruptions is solved by using a graph-based …

Large-Scale Google Street View Images For Urban Change Detection, Fangzheng Lyu, Xinlin Ma, Yan Song, Eric Zhu, Shaowen Wang

I-GUIDE Forum

Urbanization has entered a new phase characterized by urban changes occurring at a micro-scale and “under the roof”, as opposed to external modifications. These changes, known as urban retrofitting, involve the incorporation of novel technologies or features into pre-existing systems to promote sustainability. Given the limitations of remote sensing images in identifying such urban changes, novel tools need to be developed for detecting urban retrofitting. In this study, we first build a pipeline to collect large-scale time-series urban street view images from Google Street View in Mecklenburg County, North Carolina. And we examine the feasibility of utilizing the acquired dataset …

Graph Transformer Network For Flood Forecasting With Heterogeneous Covariates, Jimeng Shi, Vitalii Stebliankin, Zhaonan Wang, Shaowen Wang, Giri Narasimhan

I-GUIDE Forum

Floods can be very destructive causing heavy damage to life, property, and livelihoods. Global climate change and the consequent sea-level rise have increased the occurrence of extreme weather events, resulting in elevated and frequent flood risk. Therefore, accurate and timely flood forecasting in coastal river systems is critical to facilitate good flood management. However, the computational tools currently used are either slow or inaccurate. In this paper, we propose a Flood prediction tool using Graph Transformer Network (FloodGTN) for river systems. More specifically, FloodGTN learns the spatio-temporal dependencies of water levels at different monitoring stations using Graph Neural Networks (GNNs) …

Cross-Scale Urban Land Cover Mapping: Empowering Classification Through Transfer Learning And Deep Learning Integration, Zhe Wang, Chao Fan, Xian Min, Shoukun Sun, Xiaogang Ma, Xiang Que

I-GUIDE Forum

Urban land cover mapping is essential for effective urban planning and resource management. Thanks to its ability to extract intricate features from urban datasets, deep learning has emerged as a powerful technique for urban classification. The U-net architecture has achieved state-of-the-art land cover classification performance, highlighting its potential for mapping urban trees at different spatial scales. However, deep learning approaches often require large, labeled datasets, which are challenging to acquire for specific urban contexts. Transfer learning addresses this limitation by leveraging pre-trained deep learning models on extensive datasets and adapting them to smaller urban datasets with limited labeled samples. Transfer …

Solving Geospatial Problems Under Extreme Time Constraints: A Call For Inclusive Geocomputational Education, Coline C. Dony

I-GUIDE Forum

To prepare our next generation to face geospatial problems that have extreme time constraints (e.g., disasters, climate change) we need to create educational pathways that help students develop their geocomputational thinking skills. First, educators are central in helping us create those pathways, therefore, we need to clearly convey to them why and in which contexts this thinking is necessary. For that purpose, a new definition for geocomputational thinking is suggested that makes it clear that this thinking is needed for geospatial problems that have extreme time constraints. Secondly, we can not further burden educators with more demands, rather we should …

Reducing Uncertainty In Sea-Level Rise Prediction: A Spatial-Variability-Aware Approach, Subhankar Ghosh, Shuai An, Arun Sharma, Jayant Gupta, Shashi Shekhar, Aneesh Subramanian

I-GUIDE Forum

Given multi-model ensemble climate projections, the goal is to accurately and reliably predict future sea-level rise while lowering the uncertainty. This problem is important because sea-level rise affects millions of people in coastal communities and beyond due to climate change's impacts on polar ice sheets and the ocean. This problem is challenging due to spatial variability and unknowns such as possible tipping points (e.g., collapse of Greenland or West Antarctic ice-shelf), climate feedback loops (e.g., clouds, permafrost thawing), future policy decisions, and human actions. Most existing climate modeling approaches use the same set of weights globally, during either regression or …

Privacy-Preserving Federated Genome-Wide Association Studies Via Dynamic Sampling, Xinyue Wang, Leonard Dervishi, Wentao Li, Erman Ayday, Xiaoqian Jiang, Jaideep Vaidya

Faculty, Staff and Student Publications

MOTIVATION: Genome-wide association studies (GWAS) benefit from the increasing availability of genomic data and cross-institution collaborations. However, sharing data across institutional boundaries jeopardizes medical data confidentiality and patient privacy. While modern cryptographic techniques provide formal secure guarantees, the substantial communication and computational overheads hinder the practical application of large-scale collaborative GWAS.

RESULTS: This work introduces an efficient framework for conducting collaborative GWAS on distributed datasets, maintaining data privacy without compromising the accuracy of the results. We propose a novel two-step strategy aimed at reducing communication and computational overheads, and we employ iterative and sampling techniques to ensure accurate results. We …

Environmental Loss, Displacement, And Anxiety In Portugal: Analyzing News Articles To Differentiate Manifestations Of Environmental Distress, Robin Greene

Independent Study Project (ISP) Collection

Expressions of environmental distress can take different forms, with different symptoms, causes, and treatments. Existing literature generally identifies three primary categories of environmental distress responses: environmental grief, solastalgia, and eco-anxiety. This paper explores these distinctions and identifies words typically associated with each category in Portuguese news articles using Latent Dirichlet Allocation (LDA). LDA is a Natural Language Processing (NLP) technique that groups words into topics and identifies connections between those words based on how often those words appear together in sequences. This paper uses a modified LDA algorithm called GuidedLDA to identify additional keywords within topics defined by a list …

The Uses And Limitations Of Citizen Science For Monitoring The Australian Grey Nurse Shark (Carcharias Taurus) Population, Leah Corckran

Independent Study Project (ISP) Collection

iNaturalist is a citizen science photographic database, which is an underutilized resource in photographic identification research studies. Grey nurse sharks are critically endangered and there is a lack of knowledge regarding the estimated population size, longevity, and interactions with fisheries of this species off the coasts of Australia. To determine how photos submitted to iNaturalist can be used in Carcharias taurus conservation, the photographs were evaluated on a number of criteria including: location, date, visibility of spot patterns, visible sex characteristics, and visible injuries. In total, 814 photographs of grey nurse sharks were obtained from the iNaturalist database. Only 23.2% …

Surveillance Systems In Western Kenya: Methods, Perceptions, And Effectiveness, Marissa Duffy

Independent Study Project (ISP) Collection

Surveillance is an important tool in monitoring and evaluating infectious disease patterns and trends. Surveillance is vital because it aids public health officials and medical professionals in creating better prevention methods and efficiently managing outbreaks. Kenya is home to many noncommunicable diseases making it an important location to conduct disease surveillance. Within Kenya, each county has its own surveillance unit which tracks and controls outbreaks. In addition, government run surveillance systems were established to determine disease burden, incidence, and patterns in specific at-risk communities around Kenya. One of these major surveillance systems is Population-Based Infectious Disease Surveillance (PBIDS) which has …

A Congressional Twitter Network Dataset Quantifying Pairwise Probability Of Influence, Christian Fink, Nathan Omodt, Sydney Zinnecker, Gina Sprint

Physics Faculty Scholarship

We present a social network dataset based on interactions between members of the 117th United States Congress between Feb. 9, 2022, and June 9, 2022. The dataset takes the form of a directed, weighted network in which the edge weights are empirically obtained “probabilities of influence” between all pairs of Congresspeople. Twitter's application programming interface (API) V2 was used to determine the number of times each member of Congress retweeted, quote tweeted, replied to, or mentioned other Congressional members, and the probability of influence was found by normalizing the summed influence by the number of tweets issued by each Congressperson. …

Digital Scholarship And Data Science Intersect In Libraries: A Needs Assessment Report, Halie Kerns

Library Created Resources

The following report summarized the results of a needs assessment completed in the fall of 2023 at Binghamton University by the Libraries’ Digital Scholarship team. The aim was to understand how data science-focused programming, as part of the digital scholarship’s offerings, would be utilized on campus. The report evaluates existing literature, summarizes findings from twenty-eight interviews done across campus, and lays out an action plan for the Digital Scholarship team’s future planning.

Improving Semantic Document Classification Accuracy By Integrating Human-Crafted Knowledge, Zachary Weinfeld, Lubomir Stanchev

College of Engineering Summer Undergraduate Research Program

Document classification is a pivotal task in various domains, warranting the development of robust algorithms. Among these, the Bidirectional Encoder Representations from Transformers (BERT) algorithm, introduced by Google, has proven to perform well when fine-tuned for the task at hand. Leveraging transformer architecture, BERT demonstrates stellar language understanding capabilities. However, the integration of BERT with a range of techniques has shown potential for further enhancing classification accuracy. This work investigates several techniques that leverage semantic understanding to improve the performance of document classification models trained with BERT. Specifically, we explore three methods. First, we will balance corpuses afflicted by imbalanced …

Machine Learning Prediction Of Hea Properties, Nicholas J. Beaver, Nathaniel Melisso, Travis Murphy

College of Engineering Summer Undergraduate Research Program

High-entropy alloys (HEA) are a very new development in the field of metallurgical materials. They are made up of multiple principle atoms unlike traditional alloys, which contributes to their high configurational entropy. The microstructure and properties of HEAs are are not well predicted with the models developed for more common engineering alloys, and there is not enough data available on HEAs to fully represent the complex behavior of these alloys. To that end, we explore how the use of machine learning models can be used to model the complex, high dimensional behavior in the HEA composition space. Based on our …

Ethics And Social Justice For Ai In Data Science, Arya Ramchander, Kylene Nicole Landenberger

College of Engineering Summer Undergraduate Research Program

The advances of AI raise several critical questions about human values and ethics, highlighting the need for researchers and developers to consider the ethical implications and the risks of neglecting them. In the past few years, student researchers have developed an AI model that allows users to test their surveys for possible breaches of subject confidentiality. This allows the users to gauge the ethicality of their proposal. This summer, we have expanded on this research and launched an interactive model for students and researches to assess their current work for ethical and social justice implications. Using Langchain and Figma, we …

Dei: Exploring Academic Reflections Using Natural Language Processing To Create A Roadmap Of Student Success And Foster Inclusive Engineering Education, Rajvir H. Vyas, Nidhi Raviprasad

College of Engineering Summer Undergraduate Research Program

Every year, the College of Engineering (CENG) students and faculty reach out to admitted students through “Text-a-Thon” programs to answer their questions about being a student at Cal Poly. In order to improve CENG outreach efforts, we analyzed these text conversations to predict the likelihood of an admitted student accepting an offer of admission from Cal Poly. Through our research, we discovered key factors that play a role in a student committing to Cal Poly through data-based insights. Additionally, we successfully used a human-on-the-loop system to help create Machine Learning (ML) models that predict satisfaction of response by way of …

Spoken Language Processing And Modeling For Aviation Communications, Aaron Van De Brook

Doctoral Dissertations and Master's Theses

With recent advances in machine learning and deep learning technologies and the creation of larger aviation-specific corpora, applying natural language processing technologies, especially those based on transformer neural networks, to aviation communications is becoming increasingly feasible. Previous work has focused on machine learning applications to natural language processing, such as N-grams and word lattices. This thesis experiments with a process for pretraining transformer-based language models on aviation English corpora and compare the effectiveness and performance of language models transfer learned from pretrained checkpoints and those trained from their base weight initializations (trained from scratch). The results suggest that transformer language …

Web-Grading-A Tool To Test Personal Grading Of Renal And Prostate Cancer, Glen Kristiansen, Matthias Schmid, Lars Egevad, Hemamali Samaratunga, Murali Varma, Kaan Inam, Hans-Jürgen Thiesen, Brett Delahunt, Yulin Dai

Faculty, Staff and Student Publications

Only a few pathologists have the opportunity to verify their personal grading through objective assessment. This study introduces a web-based grading platform to facilitate and validate the grading of renal cell carcinoma and prostate cancer. Two representative images of two clinically annotated cohorts of 100 cases each of prostate and renal cell carcinoma were used. Each participant was asked to grade a tumor series utilizing a three tiered grading system. Finally, a Kaplan-Meier curve was drawn, and the log-rank test was used for statistical testing of the p-value. The grading of 22 participants (68%) achieved prognostic significance. Further analysis highlighted …

Discoverpath: A Knowledge Refinement And Retrieval System For Interdisciplinarity On Biomedical Research, Yu-Neng Chuang, Guanchu Wang, Chia-Yuan Chang, Kwei-Herng Lai, Daochen Zha, Ruixiang Tang, Fan Yang, Alfredo Costilla Reyes, Kaixiong Zhou, Xiaoqian Jiang, Xia Hu

Faculty, Staff and Student Publications

The exponential growth in scholarly publications necessitates advanced tools for efficient article retrieval, especially in interdisciplinary fields where diverse terminologies are used to describe similar research. Traditional keyword-based search engines often fall short in assisting users who may not be familiar with specific terminologies. To address this, we present a knowledge graph based paper search engine for biomedical research to enhance the user experience in discovering relevant queries and articles. The system, dubbed DiscoverPath, employs Named Entity Recognition (NER) and part-of-speech (POS) tagging to extract terminologies and relationships from article abstracts to create a KG. To reduce information overload, DiscoverPath …

Evolving Availability And Standardization Of Patient Attributes For Matching, Yu Deng, Lacey P Gleason, Adam Culbertson, Xiaotian Chen, Elmer V Bernstam, Theresa Cullen, Ramkiran Gouripeddi, Christopher Harle, David F Hesse, Jacob Kean, John Lee, Tanja Magoc, Daniella Meeker, Toan Ong, Jyotishman Pathak, Marc Rosenman, Laura K Rusie, Akash J Shah, Lizheng Shi, Aaron Thomas, William E Trick, Shaun Grannis, Abel Kho

Faculty, Staff and Student Publications

Variation in availability, format, and standardization of patient attributes across health care organizations impacts patient-matching performance. We report on the changing nature of patient-matching features available from 2010-2020 across diverse care settings. We asked 38 health care provider organizations about their current patient attribute data-collection practices. All sites collected name, date of birth (DOB), address, and phone number. Name, DOB, current address, social security number (SSN), sex, and phone number were most commonly used for cross-provider patient matching. Electronic health record queries for a subset of 20 participating sites revealed that DOB, first name, last name, city, and postal codes …

Balanced Blended Space: Proposing A Universal Theoretical Framework For Combinative Reality, David Smith, Frederick Bianchi

Publications and Research

In today's fragmented societies, a unified framework for communication and collaboration across different realities is crucial. We introduce Balanced Blended Space (BBS) as a framework for describing combinative reality, encompassing virtual, physical, and conceptual realms, all intrinsically connected. Interactions within these environments shape our perceptual space. This paper outlines key axiomatic assumptions, criteria for a universal framework, and fundamental terminology. We identify deep symmetries enabling the BBS framework, including Cognitive and Computational Symmetry, Physical and Virtual Symmetry, Mediation Pathway Symmetry, Space-Time Symmetry, and Sensory Symmetry. We propose tests to determine its viability, emphasizing virtual intelligence as a collaborative partner. We …

Research Data Management In The Canadian Context: A Guide For Practitioners And Learners, Kristi Thompson, Elizabeth T. Hill, Emily Carlisle-Johnston, Danielle Dennie, Émilie Fortin

Western Libraries Publications

Research Data Management is a term for all the things that researchers do to structure, organize and maintain data before, during and after doing research. RDM is also an emerging discipline that is concerned with researching and developing ways to manage research data more effectively. But what is research data? Where is the push towards formal Research Data Management coming from? What are the requirements of good data management? Research Data Management in the Canadian Context: A Guide for Practitioners and Learners looks at these questions and more, all with a focus on Canadian guidelines, regulations and infrastructure.