Digital Commons Network^™

High-Performance Domain-Specific Library For Hydrologic Data Processing, Kalyan Bhetwal

Boise State University Theses and Dissertations

Hydrologists must process many gigabytes of data for hydrologic simulations, which takes time and resources degrading performance. The performance issues are caused mainly by domain scientists’ preference for using Python, which trades performance for productivity. In my thesis, I demonstrate that using the static compilation technique to compile Python to generate C code along with several optimizations reduces time and resources for hydrologic data processing. I developed a Domain Specific Library (DSL) which is a subset of Python and compiles to Sparse Polyhedral Framework - Intermediate Representation (SPF-IR), which allows opportunities for optimizations like read reduction fusion which are not …

Exploring The Capability Of A Self-Supervised Conditional Image Generator For Image-To-Image Translation Without Labeled Data: A Case Study In Mobile User Interface Design, Hailee Kiesecker

Boise State University Theses and Dissertations

This research investigates the effectiveness of a conditional image generator trained on a restricted number of unlabeled images for image-to-image translation in computer vision. While previous research has focused on using labeled data for image labeling in conditional image generation, this study proposes an original framework that utilizes self-supervised classification on generated images. The proposed approach, which combines Conditional GAN and Semantic Clustering, showed promising results. However, this study has several limitations, including a limited dataset and the need for significant computational power to generate a single UI design. Further research is needed to optimize the performance of the proposed …

Identifying Sources Of Landscape Variation To Improve Predictions Of Post-Fire Sagebrush Steppe Recovery, Cara Applestein

Boise State University Theses and Dissertations

Sagebrush steppe ecosystems are endangered landscapes, threated by the annual grass-fire cycle where invasion by annual grasses drives larger fires and larger fires drive invasion. Despite extensive input of resources by land management agencies, restoration of these ecosystems is notoriously variable and difficult to predict. Understanding and accounting for variation is key to effectively allocating limited resources and having success in restoring burned sagebrush landscapes. I utilized Bayesian modeling to assess how variation in weather, seed dispersal, and topography/slope/landscape position affects understanding of post-fire sagebrush-steppe recovery and how we can best incorporate sources of variation into models predicting where plant …

A Coupled Human And Natural Systems Approach To Studying Recreation On Public Lands, Madeline C. Aberg

Boise State University Theses and Dissertations

Outdoor recreational use has increased rapidly in the western United States in recent years, which provides more people with opportunities to enjoy public lands and benefit from recreation. However, increased recreation can lead to negative social and ecological impacts that degrade both natural resources and the recreation experience. I used a Coupled Human and Natural Systems (CHANS) approach to study recreational use at the Morley Nelson Snake River Birds of Prey National Conservation Area (NCA) in southwest Idaho. This approach considers the human and natural systems, feedbacks within the systems, and effects from telecoupled influences outside of the site, which …

Anomaly Detection Using Graph Neural Network, Bishal Lakha

Boise State University Theses and Dissertations

Detecting malicious behavior is becoming increasingly crucial as the internet becomes more prevalent. This problem can be formulated as an anomaly detection task on provenance data, where attacks are detectable as anomalies in the behavior of the system. The availability of system-level data in comparison to network data is quite limited and so is the research carried out on system-level logs. However, monitoring the operating system's processes during program execution and identifying anomalous behavior in system calls can be beneficial since it can provide broad coverage and generality, as a variety of malicious applications could be identified. Furthermore, logs like …

Supervisor Workplace Violence Against Young Workers By Victim's Race/Ethnicity, Camryn Lopez

Boise State University Theses and Dissertations

Working is often seen as an integral aspect of growing up in the United States. Due to the increased desire for independence and financial gain, many adolescents decide to pursue the expansion of their job skills by entering the labor force. Adolescents crave financial independence and freedom. However, many are unaware of the risks that accompany working. The perpetrators of adolescent workplace violence are generally thought to be customers or coworkers. But what if it was the supervisor?

The main objective of the study is to determine whether abusive supervision of young workers differs depending on the worker’s race/ethnicity. Using …

A Tier 2 Support For Online Learners: Implementing A Technology-Aided Check-In/Check-Out For High School Students With Autism, Patrick J. Mallory

Boise State University Theses and Dissertations

Online education is an increasingly popular format of schooling used around the world (Digital Learning Collaborative, 2019). For students with Autism Spectrum Disorders (ASDs), challenges with executive functioning skills like self-management can have a significant impact on their ability to successfully participate in online learning. With a growing number of students with disabilities like ASD participating in online education, there is a need to explore support strategies that promote self-management in virtual environments that take into consideration the unique barriers of these students and their families. However, there is very limited research on providing behavioral support for students with ASD …

Analyzing The Effects Of Rejuvenators In Balanced Mix Design With High Percentages Of Recycled Asphalt Pavement, Amanda Jo Mullins

Boise State University Theses and Dissertations

Interest in sustainable practices have increased in several industries, including civil engineering pavement materials. The incorporation of Recycled Asphalt Pavement (RAP) into new pavement mix design is a popular method of application for sustainable practice and is accompanied by numerous economic and environmental benefits. There is significant interest in using large amounts of this RAP material in pavement design to maximize the benefits, but several problems arise when utilizing “high” amounts of this material (more than 25% RAP replacement) due to aged and oxidized binder that negatively impacts the properties. The use of rejuvenators (RAs) and Balanced Mix Design (BMD) …

Black Phosphorus Ink Formulation For Aerosol Jet Printing, Florent Muramutsa

Boise State University Theses and Dissertations

As the demand for data-driven technologies such as cloud computing, artificial intelligence, and the Internet of Things increases, the value of data centers rises. However, the cost of optical interconnects that convert optical signals to electrical signals and vice versa limits the bandwidth in these data centers. Historically the optoelectronic materials of group III–V semiconductor materials are grown using epitaxy and transferred to silicon microelectronics using robotic pick-and-place technology. This costly method restricts the large-scale production of on-chip optoelectronic components such as diodes, photodetectors, and lasers. In this dissertation, we investigated the potential of black phosphorus (BP) as a material …

Sparse Format Conversion And Code Synthesis, Tobi Goodness Popoola

Boise State University Theses and Dissertations

Sparse computations are important in scientific computing. Many scientific applications compute on sparse data. Data is said to be sparse if it has a relatively small number of non-zeros. Sparse formats use auxiliary arrays to store non-zeros, as a result, the contents of auxiliary arrays are not known until run-time. The Inspector/Executor (I/E) paradigm uses run-time information for compiler optimizations. An inspector computes information at run-time to drive transformations. The executor---a compile-time transformation of the original code--- uses information computed by the inspector. The sparse polyhedral framework (SPF) encompasses a series of tools to support I/E run-time transformations. This work …

The Influence Of K9 Partners On Law Enforcement Officers, Sydney Schultz

Boise State University Theses and Dissertations

This study aims to examine if and how the personal and professional lives of K9-handling officers and their police department are impacted by having access to and working alongside K9s. It also considers the possible variation in degrees of attachment to one’s dog between K9-handling officers and members of the general public. Through an online survey, questions from the Perceived Stress Scale and the Lexington Attachment to Pets Scale were asked to better understand how working alongside dogs can change levels of stress. It was found that K9-handling officers experience significantly lower levels of stress compared to non-K9-handling officers. Further, …

Effects Of Wildfire Smoke Exposure On Peripheral Body Systems And Implications For Laboratory Animal Research, Adam J. Schuller

Boise State University Theses and Dissertations

Wildfire smoke (WFS) exposure is becoming a frequent global problem as more intense fire seasons occur each year with warmer and drier climates. Still, little is known about the specific effects elicited when WFS exposure occurs, especially in body systems outside of the lung and heart. Here, I will discuss the classic associations that have been made between WFS exposure and cardiopulmonary health effects before sharing novel work which suggests changes in male reproductive and central nervous systems. Then, I will emphasize the importance of monitoring the air quality within laboratory animal facilities by presenting data characterizing the ability of …

Portable Sparse Polyhedral Framework Code Generation Using Multi Level Intermediate Representation, Aaron St. George

Boise State University Theses and Dissertations

The Sparse Polyhedral Framework (SPF) provides vital support to scientific applications, but is limited in portability. SPF extends the Polyhedral Model to non-affine codes. Scientific applications need the optimizations SPF enables, but current SPF tools don't support GPUs or other heterogeneous hardware targets. As clock speeds continue to stagnate, scientific applications need the performance enhancements enabled by both SPF and newer heterogeneous hardware.

The MLIR (Multi-Level Intermediate Representation) ecosystem offers a large, extensible, and cooperating set of intermediate representations (called dialects). A typical compiler has one main intermediate representation, whereas an MLIR based compiler will have many. Because of this …

Cultivating Algae To Generate Pufas, And Macromolecules Using Struvite And Stress Factors, Alejandro Torres

Boise State University Theses and Dissertations

Agricultural and municipal wastewaters contain vital elements necessary for algal growth (i.e., N, P, Mg, K). One way to capture these elements, in an environmentally friendly way, is through struvite production (NH4MgPO4·6H2O), however, this process is costly to implement. High-value secondary commodities coupled to struvite production can enable implementation of this nutrient capture strategy for agricultural and municipal wastewater systems. In this study, struvite was tested as a nutrient source for cultivation of high-value algal biomass with the main focus on high-value lipids such as Eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA). We compared the growth of microalgal strains C. …

Severity Measures For Assessing Error In Automatic Speech Recognition, Ryan Whetten

Boise State University Theses and Dissertations

A common metric for evaluating Automatic Speech Recognition (ASR) is Word Error Rate (WER) which solely takes into account discrepancies at the word-level. Although WER is useful, it is not guaranteed to correlate well with intelligibility or performance on downstream tasks that make use of ASR. Meaningful assess- ment of ASR mistakes becomes even more important in high-stake scenarios such as health-care. I propose 2 general measures to evaluate the quality or severity of mistakes made by ASR systems, one based on sentiment analysis and another based on text embeddings. Both have the potential to overcome the limitations of WER. …

More Than Meets The Eye: In-Store Retail Experiences With Augmented Reality Smart Glasses, Pauline Pfeifer, Tim Hilken, Jonas Heller, Saifeddin Alimamy, Roberta Di Palma

All Works

Augmented reality smart glasses (ARSGs) promise to enhance consumer experiences and decision-making when deployed as in-store retail technologies. However, research to date has not studied in-store use cases; instead, it has focused primarily on consumers' potential adoption of these devices for everyday use. Nor have prior studies compared ARSG uses with the now-common use of AR on touchscreen devices. The current research addresses these knowledge gaps by examining whether ARSGs outperform AR on touchscreen devices in the context of in-store retail experiences. Testing with an actual retail application (n = 308) shows that ARSGs are superior to AR on touchscreen …

A Spectacle Of Dance, Fantasy, And Time: Notes On Select Works For Clarinet, Sarah Faltz

Research Papers

This paper provides extended program notes on works for clarinet from the late twentieth century, giving historical context and analysis for each of the four pieces. These pieces were prepared and performed for the author’s Master’s Recital given on April 22^nd, 2023. The first piece, Dancing Solo, was composed by Libby Larsen in 1994 for solo clarinet. The second piece is Fantasy (… those harbor lights), composed by Joan Tower in 1983 for clarinet and piano. The third piece is Time Pieces by Robert Muczynski composed in 1983 for clarinet and piano. The fourth is Tricolor …

Different Approaches To Overcome Antibiotic Resistance, Samantha Biaesch

Chemistry

In the recent years, there has been a growing demand for the development of antibiotic treatments as bacterial infections have acquired defense mechanisms to commonly used antibiotics, such as penicillin. During the growth of bacterial cells, resistant mutants are able to survive antibiotic treatment and continue proliferation. Thus, creating a resistant bacterial cell population that can no longer be targeted through antibiotic treatment. Due to the recent need of new approaches, there has been an explosion of research in developing techniques that combat bacterial resistance. Both bacteriophage-RNA aptamer binding and modifications in bacterial tRNA show potential to be exploited for …

Time Varied Self-Reliance Aerial Ground Traffic Monitoring System With Pre-Recognition Collision Avoidance, Seungheyon Lee, Sooeon Lee, Yumin Choi, Jalel Ben-Othman, Lynda Mokdad, Hyunbum Kim

All Works

In this letter, we introduce a time varied self-reliance aerial ground traffic monitoring system which provides pre-recognition collision avoidance among mobile robots and smart UAVs for virtual emotion security. Then, with ILP (Integer Linear Programming), we make a formal definition of the problem whose objective is to minimize a total spent time by smart UAVs (Unmanned Aerial Vehicles) and mobile robots without conflicts on condition that the demanded number of self-reliance security barriers are formed. To solve the defined problem, we develop two approaches, time-differentiated pre-stop movement and approximated equal segments movement. Then, those schemes are implemented through expanded experiments …

Correlation Of Intracellular Metabolites With Optical Metabolic Imaging In Polarized Macrophages As Indicators Of Metabolic Reprogramming, Abby Claire Denison, Shelby Bess

Biomedical Engineering Undergraduate Honors Theses

Macrophages are a type of immune cell that are characterized by their ability to differentiate into various active phenotypes based on environmental stimuli. They can generally be classified as one of two extremes: inflammatory/M1 or wound-healing/M2. Macrophage populations in vivo, however, are rarely homogenous, and since macrophages play vital roles in the immune response, particularly in the context of the tumor microenvironment (TME), it’s important to be able to investigate and understand heterogenous macrophage populations to develop more effective treatments. Recently, autofluorescence imaging such as multiphoton microscopy and fluorescence lifetime imaging microscopy (FLIM) of metabolic cofactors NADH and FAD have …

Comprehensive Long- And Short- Read Sequencing Approaches To Screen The Mutational Landscape After Therapeutic Crispr-Editing For Duchenne Muscular Dystrophy, Mary Jia, Made Harumi Padmaswari, Landon Burcham, Shilpi Agrawal, Alexis Ivy, Abbey Bryan, Christopher E. Nelson

Biomedical Engineering Undergraduate Honors Theses

Duchenne muscular dystrophy (DMD) is an X-linked muscle wasting disease caused by mutations in the Dmd gene resulting in non-functional dystrophin. Adeno-associated virus (AAV)-mediated delivery of classical CRISPR systems resulting in double-stranded breaks (DSBs) has yielded promise as a curative DMD therapeutic. However, the consequences of AAV-CRISPR require more thorough characterization. PCR-enriched short-read amplicon sequencing at cut sites is the most common method of sequencing CRISPR editing, but PCR bias results in unreliable quantification of on-target edits. We analyze orthogonal long- and short-read sequencing approaches to screen the outcomes of CRISPR technologies at the DNA and RNA-level for DMD. We …

A Wheelchair-Bed Transfer Device For Patients With Limited Mobility, Malachie Nichols

Biomedical Engineering Undergraduate Honors Theses

As the population ages, eldercare becomes more important than ever, yet many caregivers lack the resources they need to safely do their jobs. For those who take care of a disabled loved-one at home or work as home health aides, basic tasks can be frustrating and even dangerous. The high physical demands of moving and lifting patients make injuries common among home health care workers. Musculoskeletal injuries to the back, shoulders, wrists, and hands are especially common. The use of transfer devices such as Hoyer lifts, slide boards, and gait belts help to make moving patients easier and safer, but …

Effects Of Sow Vocalization And Scent On Complete Blood Cell Count During Early Weaning Period, Mason Paladino

Biological Sciences Undergraduate Honors Theses

Piglets are deprived of their sows’ touch, sound, and smell after weaning which results in biological stress. The present study investigated continuing exposure of sow vocalization and scent during the early weaning period on complete blood cell count. A total of 12 litters, 8 piglets (4 male and 4 female) per litter were selected at weaning and assigned to 1 of 4 experimental treatments: control, O (olfactory group with scent and no vocal stimulation), V (non-olfactory with vocal stimulation), VO (vocal stimulation and olfactory stimulation) as a 2x2 factorial arrangement. Vocal stimulation was emulated by an audio recording of the …

Investigating The Role Of The Sumo-Activating Enzyme, Uba2, In Infection-Related Morphogenesis Of Magnaporthe Oryzae, Rachel Taylor

Biological Sciences Undergraduate Honors Theses

The plant pathogenic fungus Magnaporthe oryzae forms a specialized pressure-generating infection cell called an appressorium on the leaf surface, which it uses to mechanically rupture the otherwise impenetrable cuticle, enabling colonization of the underlying tissue and the establishment of blast disease. Appressorium differentiation by M. oryzae is cell cycle-regulated and requires programmed cell death of a three-celled propagative spore, as well as extensive remodeling of the microtubule, actin, and septin cytoskeletons. Recent studies have proposed the importance of sumoylation – the enzymatic conjugation of a small ubiquitin-like modifier to target proteins, for various aspects of infection-related development by M. oryzae, …

An Overview Of Serial Depletions Of Global Marine Fisheries 1950 To 2019, Alison Follmer

Biological Sciences Undergraduate Honors Theses

Overfishing is a global issue that poses a significant risk to the entire ocean ecosystem in diminishing biodiversity and ecosystem function. This thesis examined the pattern and pace of fisheries depletions due to commercial fishing during the past 70 years. The Food and Agriculture Organization of the United Nations (FAO) Division of Fisheries and Aquaculture maintains a database of global hauls of marine taxa (reported in metric tonnes) from 1950 – 2019. These data were queried to determine the total number and sequence of fisheries depletions documented by the historic record. Analysis of this database showed progressive, linearly-increasing exploitation of …

The Effects Of Salt And Temperature On Three Methanogen Species: Implications For Mars, Katy Dunlap

Biological Sciences Undergraduate Honors Theses

The question of whether life has ever existed on Mars – either in the past or currently – has been pursued for decades. This debate has been prompted by a variety of discoveries regarding similarities between Mars and Earth and more recently concerns over human extinction. Mars, like Earth, once had large amounts of water, a key ingredient for life. H₂O exists on Mars in various forms now, and it is theorized that there is liquid water beneath the surface as well. Mars also contains salt and is very cold at its surface, pointing researchers towards the idea …

Effect Of Mating On Male Choosiness In Bicyclus Anynana, Ellie Hope Magera

Biological Sciences Undergraduate Honors Theses

Males mate multiply in many species, including butterflies, but little is known about whether the act of mating influences future male choosiness. We might expect mating to influence future preference, as previous studies have shown that pre-mating social experiences affect future male mate choice. To determine if initial male mate choice affects subsequent male mating decisions, we conducted behavioral assays using the subtropical nymphalid butterfly Bicyclus anynana. We tested three alternative hypotheses: 1) initial mating is a positive experience that strengthens male preference for the previously encountered phenotype; 2) males prefer mating with a different phenotype in their second …

Understanding The Role Of Heterodisulfide Reductase During Nitrogen Fixation By Methanosarcina Acetivorans, Grant Shelnut

Biological Sciences Undergraduate Honors Theses

Methanosarcina acetivorans is a methanogenic archaeon (methanogen) that is important for several processes in our biosphere. A feature of interest within this methanogen is the enzyme nitrogenase which catalyzes the reduction of unusable dinitrogen gas (N₂) into a usable form of nitrogen, ammonia (NH₃). How electrons are transferred within M. acetivorans to nitrogenase during N₂ reduction is unknown. Heterodisulfide reductase (Hdr) is a key enzyme known to reduce the electron carrier protein ferredoxin, which is a direct electron donor to nitrogenase in bacteria. I hypothesized that cytoplasmic HdrA2B2C2 functions in electron transfer to nitrogenase and …

Hormonal Control Of Osmoregulatory Proteins In The Intestine Of Atlantic Killifish (Fundulus Heteroclitus), Karma Hine

Biological Sciences Undergraduate Honors Theses

The Atlantic killifish (Fundulus heteroclitus) is a euryhaline fish, and thus able to maintain ionic and osmotic homeostasis in a wide range of salinities. When exposed to the dehydrating marine environment, the lost water is replenished through drinking seawater (SW) which is processed and absorbed in the intestine through the involvement of various cellular effectors. Intestinal water transport is osmotically driven by the active removal of NaCl from the gut lumen to the blood coupled to the precipitation of divalent Mg²⁺ and Ca²⁺ due to the secretion of bicarbonate. These processes allow for successive removal of …

Cross-Platform Development Of Wake-Up-Word, Christopher Ryan Woodle

Theses and Dissertations

The goal of this project will be to explore cross-platform implementation of Wake-Up- Word (WUW). To enable the development of future speech-based artificial intelligence applications, it is important to have robust and accessible implementations of WUW. Adoption of Unix based operating systems continues to expand for server, backend, and embedded applications, therefore a WUW implementation in Unix will become essential. As web technologies continue to grow, WUW will also need to be implemented in web, using technologies such as JavaScript and Web Assembly (WASM). This project encompasses porting the previous implementation of WUW from Microsoft Windows to Unix, building a …