Digital Commons Network^™

Precise Measurements Of Tev Halos Around Geminga And Monogem Pulsars With Hawc, A. Albert, R. Alfaro, C. Alvarez, J. C. Arteaga-Velázquez, D. Avila Rojas, H. A. Ayala Solares, R. Babu, E. Belmont-Moreno, A. Bernal, K. S. Caballero-Mora, T. Capistrán, A. Carramiñana, S. Casanova, U. Cotti, J. Cotzomi, S. Coutiño De León, E. De La Fuente, D. Depaoli, N. Di Lalla, R. Diaz Hernandez, B. L. Dingus, M. A. Duvernois, M. Durocher, J. C. Diaz-Velez, K. Engel, C. Espinoza, K. L. Fan, K. Fang, N. Fraija, K. A. Garcia-Gonzalez, F. Garfias, H. Goksu, M. M. Gonzalez, J. A. Goodman, S. Groetsch, J. P. Harding, S. Hernandez-Cadena, I. Herzog, P. Huntemeyer, D. Huang, F. Hueyotl-Zahuantitla, A. Iriarte, V. Joshi, S. Kaufmann, D. Kieda, A. Lara, W. H. Lee, J. Lee, H. Leon Vargas, J. T. Linnemann, A. L. Longinotti, G. Luis-Raya, K. Malone, O. Martinez, J. Martinez-Castro, J. A. Matthews, P. Miranda-Romagnoli, J. A. Montes, J. A. Morales-Soto, E. Moreno, M. Mostafa, A. Nayerhoda, L. Nellen, R. Noriega-Papaqui, L. Olivera-Nieto, N. Omodei, Y. Perez Araujo, E. G. Perez-Perez, C. D. Rho, D. Rosa-Gonzalez, H. Salazar, D. Salazar-Gallegos, A. Sandoval, M. Schneider, G. Schwefer, J. Serna-Franco, Y. Son, R. W. Springer, O. Tibolla, K. Tollefson, I. Torres, R. Torres-Escobedo, R. Turner, F. Urena-Mena, E. Varela, L. Villasenor, Xiaojie Wang, I. J. Watson, E. Willox, H. Wu, S. Yun-Carcamo, H. Zhou, M. Di Mauro

Physics Faculty Research & Creative Works

We present the most precise measurements to date for the spatial extension and energy spectrum of the γ-ray region between a pulsar's wind nebula and the interstellar medium, better known as the halo, present around Geminga and PSR B0656+14 (Monogem) using ∼2398 days of >1 TeV data collected by the HAWC observatory. We interpret the data using a physically motivated model for the diffuse γ-ray emission generated from positrons and electrons (e^±) injected by the pulsar wind nebula and inverse Compton scattering with interstellar radiation fields. We find the morphologies of the regions inside these halos are characterized …

Cobalt Molybdenum Telluride As An Efficient Trifunctional Electrocatalyst For Seawater Splitting, Rajarshi Kar, Amideddin Nouralishahi, Harish Singh, Manashi Nath

Chemistry Faculty Research & Creative Works

A mixed-metal ternary chalcogenide, cobalt molybdenum telluride (CMT), has been identified as an efficient tri-functional electrocatalyst for seawater splitting, leading to enhanced oxygen evolution reaction (OER), hydrogen evolution reaction (HER), and oxygen reduction reaction (ORR). The CMT was synthesized by a single step hydrothermal technique. Detailed electrochemical studies of the CMT-modified electrodes showed that CMT has a promising performance for OER in the simulated seawater solutions, exhibiting a small overpotential of 385 mV at 20 mA cm⁻², and superior catalyst durability for prolonged period of continuous oxygen evolution. Interestingly, while gas chromatography analysis confirmed the evolution of oxygen …

Development Of Malate Biosensor-Containing Hydrogels And Living Cell-Based Sensors, Nathan J. Ricks, Monica Brachi, Kevin Mcfadden, Rohit G. Jadhav, Shelley D. Minteer, Ming C. Hammond

Chemistry Faculty Research & Creative Works

Malate is a key intermediate in the citric acid cycle, an enzymatic cascade that is central to cellular energy metabolism and that has been applied to make biofuel cells. To enable real-time sensing of malate levels, we have engineered a genetically encoded, protein-based fluorescent biosensor called Malon specifically responsive to malate by performing structure-based mutagenesis of the Cache-binding domain of the Citron GFP-based biosensor. Malon demonstrates high specificity and fluorescence activation in response to malate and has been applied to monitor enzymatic reactions in vitro. Furthermore, we successfully incorporated Malon into redox polymer hydrogels and bacterial cells, enabling analysis of …

Performance Of Project Delivery Methods For Us Airport Projects: A Holistic Quantitative Risk-Based Assessment Through Perceptions Of Associated Industry Experts, Ramy Khalef, Islam H. El-Adaway

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

The aviation sector received an underperforming D+ score, indicating its deteriorating qualities in comparison with the overall US infrastructure. In response, US governmental bodies issued investment bills that target the improvement of the nation's airport system. Airport projects are still being implemented through design-bid-build (DBB), which is notorious for its ineffective risk shift, low contractor input, and poor cost and schedule performance. Studies show that design-build (DB) possesses prospective cost and schedule benefits. Despite this, there is still reluctance toward DB's usage in airport projects. Moreover, current studies lack in offering frameworks that assist airport practitioners in guiding stakeholders toward …

Kinetic Modeling Of Dust Grain Dynamics In Electrostatic Sieving, Aaron Berkhoff, Easton Ingram, Fateme Rezaei, Jeffrey Smith, David Bayless, William Schonberg, Daoru Han

Chemical and Biochemical Engineering Faculty Research & Creative Works

A new kinetic particle modeling framework was developed to investigate electrostatic transport of lunar regolith dust particles with applications to the concept of electrostatic sieving. the new approach is based on kinetic particle dynamics and includes major modules of sampling the particle size distribution, solving electric fields, and tracking motion of charged dust grains. a case study for a concept of electrostatic sieving was chosen to validate the new model. the simulation achieved similar performance of particle size classification as reported in the literature. the new model is computationally efficient (takes a few minutes on a PC-type laptop computer) so …

التفريد القضائي للعقوبة في القانون الجزائي الاماراتي, Hamad Abdulla Alebri

Theses

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Judicial Individualization of Punishment in UAE Criminal Law

This study addresses the topic of judicial individualization of punishment in UAE criminal legislation through a descriptive-analytical approach. In the preliminary section, the study defines punishment, which is imposed as a consequence of a crime that has already occurred, and precautionary measures aimed at confronting criminal danger to prevent future harm that could affect society. The characteristics and purposes of both punishment and precautionary measures are detailed, as they cannot be applied unless those implementing them understand their goals and intended outcomes.
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Soprano: Macitentan In Patients With Pulmonary Hypertension Following Left Ventricular Assist Device Implantation, Robert P Frantz, Gregory Ewald, Joel D Schilling, Et Al.

2020-Current year OA Pubs

Macitentan is a dual endothelin receptor antagonist (ERA) approved for treating pulmonary arterial hypertension (PAH). SOPRANO evaluated the efficacy and safety of macitentan versus placebo in pulmonary hypertension (PH) patients after left ventricular assist device (LVAD) implantation. SOPRANO was a phase 2, multicenter, double-blind, randomized, placebo-controlled, parallel-group study. Patients with an LVAD implanted within the prior 90 days who had persistent PH (i.e., mean pulmonary arterial pressure ≥25 mmHg, pulmonary artery wedge pressure [PAWP] ≤18 mmHg, and pulmonary vascular resistance [PVR] >3 Wood units [WU]) were randomized (1:1) to macitentan 10 mg or placebo once daily for 12 weeks. The …

Neutrosophic Approach To Water Quality Assessment: A Case Study Of Gomati River, The Largest River In Tripura, India, Ajoy Kanti Das, Nandini Gupta, Carlos Granados, Rakhal Das, Suman Das

Neutrosophic Systems with Applications

This study addresses the complexity of assessing river water quality, a multifaceted process influenced by numerous water quality parameters (WQPs) characterized by inherent uncertainties and diverse judgment information from decision-makers. These uncertainties and diverse judgment information can be effectively represented and simulated using Neutrosophic sets. In this study, we propose an effective water pollution rating system, the Neutrosophic water quality index (NWQI), to derive a water pollution score (NWQI-score) for rating water pollution levels. We demonstrate the application of our methodology through an assessment of water quality indices for rating pollution in the Gomati River, the largest river in Tripura, …

Unveiling Similarities In The Code Of Life: A Detailed Exploration Of Dna Sequence Matching Algorithm, Mahmoud Y. Shams, Romany M. Farag, Dalia A. Aldawody, Huda E. Khalid, Ahmed K. Essa, Hazem M. El-Bakry, A. A. Salama

Neutrosophic Systems with Applications

Identifying similar DNA sequences is crucial in various biological research endeavors. This paper delves into the intricate workings of a specific algorithm designed for this purpose. We provide a systematic explanation, exploring how the algorithm handles user input, reads stored DNA sequences, utilizes the Word2Vec model for vector representation, and calculates sequence similarity using diverse metrics like Cosine Similarity and Neutrosophic Distance. Additionally, the paper explores the incorporation of neutrosophic values to account for uncertainty in the comparisons. Finally, we discuss the extraction of results, including matched sequences, similarity scores, and accuracy measures. This in-depth exploration provides a clear understanding …

A Study On The Polarity Of Generalized Neutrosophic Ideals In Bck-Algebra, Bavanari Satyanarayana, Shake Baji

Neutrosophic Systems with Applications

In this study, we apply k-polar generalized neutrosophic logic to the ideal of BCK-algebra and consequently introduce the notion of a k-polar generalized neutrosophic ideal in BCK-algebra with an example. We provide conditions for a k-polar generalized neutrosophic set to be a k-polar generalized neutrosophic ideal. We prove that every k-polar generalized neutrosophic ideal is a k-polar generalized neutrosophic subalgebra, but the converse is not true, which can be illustrated with an example. Furthermore, we prove that a k-polar generalized neutrosophic set is a k-polar generalized neutrosophic ideal if and only if its corresponding cut sets are ideals of the …

An Approach To Multi-Attribute Decision-Making Based On Single-Valued Neutrosophic Hesitant Fuzzy Aczel-Alsina Aggregation Operator, Raiha Imran, Kifayat Ullah, Zeeshan Ali, Maria Akram

Neutrosophic Systems with Applications

A single-valued Neutrosophic hesitant fuzzy set (SVNHFS) is a combination of a single-valued neutrosophic set (SVNS) and hesitant fuzzy set (HFS) that has been developed to address insufficient, unreliable, and vague environments in which each element has several possible options determined by the truthiness, indeterminacy and falsity value. By considering this, in this paper, we have proposed the Aczel-Alsina aggregation operator (AAAO) for SVNHFS, which is more flexible t-norm and t-conorm than the other and due to the flexible nature of parameters to solve Multi-Attribute decision making (MADM) problems. Further, the score function, accuracy function, and certainty function of SVNHFS …

Evaluation Of Renewable Energy Sources For A Sustainable Future: A Multi-Criteria Decision-Making Approach, Mai Mohamed, Asmaa Elsayed

Neutrosophic Systems with Applications

The urgent global challenges of climate change, energy security, and environmental degradation highlight the need for sustainable energy solutions. Renewable energy sources (RES) present a viable pathway towards sustainability by mitigating greenhouse gas emissions, reducing reliance on fossil fuels, and fostering economic resilience. Purpose: The purpose of this paper is to propose an advanced Multi-Criteria Decision-Making (MCDM) approach to evaluate various RES by integrating environmental, economic, technological, social acceptance, and resource availability criteria, to identify the most suitable RES for sustainable energy solutions. Methodology: The study employs a hybrid method combining Type-2 Neutrosophic Numbers (T2NN) with LOPCOW (Logarithmic Percentage Change …

Fabrication And Evaluation Of Multicomponent Biomimetic Scaffolds For Bone Tissue Engineering, Mozan Osman Hassan

Dissertations

Bones have an inherent ability to remodel, but critical-size defects can hinder regeneration, leading to delayed healing or non-union fractures. Traditional bone grafts have limitations, such as donor site morbidity and immune rejection, driving the need for synthetic bone substitutes. Bone tissue engineering (BTE) addresses this by developing biomimetic scaffolds that replicate bone properties. This research aimed to fabricate composite scaffolds from strontium (Sr) and zinc (Zn) doped nano-hydroxyapatite (nHAp), collagen, and poly(lactide-co-glycolide) (PLGA). Different doping percentages of Sr/Zn (1%, 2.5%, 4%) were used to fabricate the scaffolds using supercritical CO2 (ScCO2) and electrospinning techniques. Scaffolds were then analyzed for …

Reflections On Linear B (Part 4): Linear B Sign 51 From The Egyptian Beetle-God Khepri, Gerald Leonard Cohen

Arts, Languages and Philosophy Faculty Research & Creative Works

No abstract provided.

Computer Based Modeling For Small E-Vtol Propeller Performance, Ege Konuk

Mechanical & Aerospace Engineering Theses & Dissertations

The emerging field of urban air mobility (UAM) offers a novel transportation method for civil, commercial, and military applications. Vertical take-off and landing (VTOL) configurations present challenges for performance prediction during crucial flight operations. An advanced computational framework for predicting propeller performance in electric vertical takeoff and landing (eVTOL) aircraft during transition flight is essential for future concept designs. This research extends the Blade Element Momentum Theory (BEMT) to model propeller behavior at high incidence angles, crucial for eVTOL operation.

The study begins with a review of tilt-wing/rotor configurations for eVTOLs and tackles the complex aerodynamic phenomena associated with rotors …

Comprehensive Study Of Energy Capturing, Conversion, And Transportation Behaviors In A Piezoelectric Vibration Energy Harvesting System, Bingqi Zhao

Mechanical & Aerospace Engineering Theses & Dissertations

Piezoelectric vibration energy harvester (PEH) is one of the hottest research areas to address renewable energy issues with over 10,000 journal articles published in the last two decades. However, several critical issues, such as the proof mass effects, electrical impedance, mechanical resonance, and energy charging processing, remain open. This dissertation presents a comprehensive study addressing the above issues.

To obtain reliable results, a professional quality flextensional PEH (FPEH) and multiple comprehensive experimental methods were developed, and ANSYS FEM modelling was used. Study of the proof mass effect indicated that the generated voltage linearly increased with the weight ratio of the …

Carboxymethyl Cellulose-Based Preformed Particle Gels For Water Management In Oil And Gas Reservoirs, Ahmed Ben Ali, Ahmed Hamza, Abdulaziz A. Almakimi, Mohammed Saad, Ibnelwaleed A. Hussein, Baojun Bai

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Carboxymethyl cellulose (CMC) based materials have been proposed as preformed particle gels (PPGs) for reducing excessive water production in oil and gas reservoirs. Multi-sized dry particles ranging between 100 and 1180 μm have been synthesized using microwave-assisted grafting copolymerization of CMC and acrylamide (AM)/n,n''-methylene-bisacrylamide (MBA). FTIR and SEM confirmed CMC crosslinked polyacrylamide's chemical structure and morphology (CMC/CPAM). Thermo-gravimetric analysis has demonstrated the thermal stability of dry PPGs up to 309 °C. CMC/CPAM showed slightly high absorbency in brine 2 (TDS = 67.3 g/L) compared to brine 1 (TDS = 33.65 g/L), 1% NaCl, and deionized water, with swelling ratios (SR) …

Effect Of Heat Stress On The Expression Of Circulating Cyto(Chemo)Kine And Inflammatory Markers In Broiler Chickens Selected For High- Or Low-Water Efficiency, Elizabeth S. Greene, Travis Tabler, Walter G. Bottje, Sara Orlowski, Sami Dridi

Poultry Science Faculty Publications and Presentations

Background:

Water scarcity is a current, significant global concern that will only increase under the pressure of climate change. Improving water efficiency of poultry is a new and promising area to help temper agriculture's future impact on fresh water availability. Here, we explored the effects of acute heat stress (HS) on circulating stress and inflammatory markers in 2 lines of broilers divergently selected for water efficiency. Methods:

Male chicks from low (LWE) and high water efficient (HWE) lines were raised in 12 environmental chambers (2 pens/chamber, 6 chambers/line, 20 birds/pen) under normal conditions until day 28. On day 29, birds …

Stable Isotope Analysis Of Antipatharian Diets From The Northwestern Gulf Of Mexico, Keir J. Macartney, Victoria Salinas, Zachary Rivera, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

Antipatharians, or black corals, form a key component of the benthic fauna found throughout the Gulf of Mexico (GOM). In the northwestern GOM, they are a common member of the communities found on the natural relic coral—algal banks known as the South Texas Banks as well as on artificial reefs. They are known to provide important habitat for many ecologically and economically important species in the area but are relatively understudied. Here we present a study on their trophic ecology using stable isotope analysis of carbon and nitrogen from 2 species, Antipathes atlantica and Stichopathes luetkeni from a mesophotic artificial …

Long Covid Among Undocumented Latino Immigrant Populations In The Emergency Department, Karen P Reyes, Zubaid Rafique, Brian Chinnock, Vijaya Arun Kumar, Michael Gottlieb, Kristin L Rising, Robert M Rodriguez

Faculty, Staff and Students Publications

This cross-sectional study assesses the understanding of and access to care for long COVID symptoms among undocumented Latino immigrants in US emergency departments (EDs).

Considerations For Reporting Variants In Novel Candidate Genes Identified During Clinical Genomic Testing, Jessica X Chong, Seth I Berger, Samantha Baxter, Erica Smith, Changrui Xiao, Daniel G Calame, Megan H Hawley, E Andres Rivera-Munoz, Stephanie Ditroia, Genomics Research To Elucidate The Genetics Of Rare Diseases (Gregor) Consortium, Michael J Bamshad, Heidi L Rehm

Faculty, Staff and Students Publications

Since the first novel gene discovery for a Mendelian condition was made via exome sequencing, the rapid increase in the number of genes known to underlie Mendelian conditions coupled with the adoption of exome (and more recently, genome) sequencing by diagnostic testing labs has changed the landscape of genomic testing for rare diseases. Specifically, many individuals suspected to have a Mendelian condition are now routinely offered clinical ES. This commonly results in a precise genetic diagnosis but frequently overlooks the identification of novel candidate genes. Such candidates are also less likely to be identified in the absence of large-scale gene …

The Undiagnosed Diseases Network: Characteristics Of Solvable Applicants And Diagnostic Suggestions For Nonaccepted Ones, John J Mulvihill, Laura Findley, Weihong Ni, Janet S Sinsheimer, F Session Cole, Cecilia Esteves, Jonathan A Bernstein, John H Newman, Matthew T Wheeler, Jill R Mokry, Undiagnosed Diseases Network

Faculty, Staff and Students Publications

Purpose: Can certain characteristics identify as solvable some undiagnosed patients who seek extensive evaluation and thorough record review, such as by the Undiagnosed Diseases Network (UDN)?

Methods: The UDN is a national research resource to solve medical mysteries through team science. Applicants provide informed consent to access to their medical records. After review, expert panels assess if applicants meet inclusion and exclusion criteria to select participants. When not accepting applicants, UDN experts may offer suggestions for diagnostic efforts. Using minimal information from initial applications, we compare features in applicants who are not accepted with those who are accepted and either …

Contemporary Epidemiology Of Hepatocellular Carcinoma: Understanding Risk Factors And Surveillance Strategies, Fouad Jaber, George Cholankeril, Hashem B El-Serag

Faculty, Staff and Students Publications

The contemporary epidemiology of hepatocellular carcinoma (HCC) shows a shift in the main etiological risk factors from less common but highly virulent (eg, hepatitis C and B) to more common but weak risk factors (eg, alcohol and metabolic syndrome). Therefore, we are in a seemingly paradoxical state of declining overall incidence rates of HCC-related to improved prevention and treatment of viral hepatitis but burgeoning number of people at an elevated risk of HCC. Several geographic regions have reported an increase in HCC attributable to alcoholic liver disease and metabolic dysfunction associated with steatotic liver disease (MASLD). The importance of risk …

Evaluating Progress And Accountability For Achieving Cop26 Health Programme International Ambitions For Sustainable, Low-Carbon, Resilient Health-Care Systems, Iris Martine Blom, Fawzia N Rasheed, Hardeep Singh, Matthew J Eckelman, Meghnath Dhimal, Martin Hensher, Renzo R Guinto, Alice Mcgushin, Xuejuan Ning, Poornima Prabhakaran, Marina Romanello, Dana Van Alphen, Nick Watts, Jessica C Yu, Carol Zavaleta-Cortijo, Andrea J Macneill, Jodi D Sherman

Faculty, Staff and Students Publications

A global initiative to develop low-carbon, resilient health systems-the COP26 Health Programme-launched at the UN Framework Convention on Climate Change 26th Conference of the Parties (COP26) in 2021. As of May, 2024, 83 nations have committed to participate in this initiative. This analysis evaluates the effectiveness of existing and proposed indicators towards public monitoring and accountability to these commitments. Our findings reveal substantial gaps in data availability and indicator relevance, with many countries reporting process indicators that do not reflect actual progress towards achieving sustainable health-care systems. We found a dearth of suitable indicators and an urgent need to develop …

Influenza C Virus In Us Children With Acute Respiratory Infection 2016–2019, Bethany K Sederdahl, Geoffrey A Weinberg, Angela P Campbell, Rangaraj Selvarangan, Jennifer E Schuster, Joana Y Lively, Samantha M Olson, Julie A Boom, Pedro A Piedra, Natasha B Halasa, Laura Stewart, Peter G Szilagyi, G K Balasubramani, Theresa Sax, Judith M Martin, Robert W Hickey, Marian G Michaels, John V Williams, New Vaccine Surveillance Network

Faculty, Staff and Students Publications

Influenza C virus (ICV) is an orthomyxovirus related to influenza A and B, yet due to few commercial assays, epidemiologic studies may underestimate incidence of ICV infection and disease. We describe the epidemiology and characteristics of ICV within the New Vaccine Surveillance Network (NVSN), a Centers for Disease Control and Prevention (CDC)-led network that conducts population-based surveillance for pediatric acute respiratory illness (ARI). Nasal or/combined throat swabs were collected from emergency department (ED) or inpatient ARI cases, or healthy controls, between 12/05/2016-10/31/2019 and tested by molecular assays for ICV and other respiratory viruses. Parent surveys and chart review were used …

Rotavirus Vaccine Effectiveness Against Severe Acute Gastroenteritis: 2009-2022, Alpha Oumar Diallo, Mary E Wikswo, Iddrisu Sulemana, Leila C Sahni, Julie A Boom, Sasirekha Ramani, Rangaraj Selvarangan, Mary E Moffatt, Christopher J Harrison, Natasha Halasa, James Chappell, Laura Stewart, Mary Allen Staat, Elizabeth Schlaudecker, Christina Quigley, Eileen J Klein, Janet A Englund, Danielle M Zerr, Geoffrey A Weinberg, Peter G Szilagyi, Christina Albertin, Samantha H Johnston, John V Williams, Marian G Michaels, Robert W Hickey, Aaron T Curns, Michelle Honeywood, Slavica Mijatovic-Rustempasic, Mathew D Esona, Michael D Bowen, Umesh D Parashar, Rashi Gautam, Sara A Mirza, Jacqueline E Tate

Faculty, Staff and Students Publications

Background: Rotavirus was the leading cause of acute gastroenteritis among US children until vaccine introduction in 2006, after which, substantial declines in severe rotavirus disease occurred. We evaluated rotavirus vaccine effectiveness (VE) over 13 years (2009-2022).

Methods: We analyzed data from the New Vaccine Surveillance Network using a test-negative case-control design to estimate rotavirus VE against laboratory-confirmed rotavirus infections among children seeking care for acute gastroenteritis (≥3 diarrhea or ≥1 vomiting episodes within 24 hours) in the emergency department (ED) or hospital. Case-patients and control-patients were children whose stool specimens tested rotavirus positive or negative, respectively, by enzyme immunoassay or …

Perineuronal Nets’ Role In Metabolism, Nan Zhang, Beite Song, Peng Bai, Li Du, Lulu Chen, Yong Xu, Tianshu Zeng

Faculty, Staff and Students Publications

Perineuronal nets (PNNs), specialized extracellular matrix (ECM) structures that envelop neurons, have recently been recognized as key players in the regulation of metabolism. This review explores the growing body of knowledge concerning PNNs and their role in metabolic control, drawing insights from recent research and relevant studies. The pivotal role of PNNs in the context of energy balance and whole body blood glucose is examined. This review also highlights novel findings, including the effects of astroglia, microglia, sex and gonadal hormones, nutritional regulation, circadian rhythms, and age on PNNs dynamics. These findings illuminate the complex and multifaceted role of PNNs …

Metabolic Dependencies Of Acute Myeloid Leukemia Stem Cells, Xiangguo Shi, Mengdie Feng, Daisuke Nakada

Faculty, Staff and Students Publications

Acute myeloid leukemia (AML) is a heterogeneous hematologic malignancy primarily driven by an immature population of AML cells termed leukemia stem cells (LSCs) that are implicated in AML development, chemoresistance, and relapse. An emerging area of research in AML focuses on identifying and targeting the aberrant metabolism in LSCs. Dysregulated metabolism is involved in sustaining functional properties of LSCs, impeding myeloid differentiation, and evading programmed cell death, both in the process of leukemogenesis and in response to chemotherapy. This review discusses recent discoveries regarding the aberrant metabolic processes of AML LSCs that have begun to change the therapeutic landscape of …

Characterization And Visualization Of Tandem Repeats At Genome Scale, Egor Dolzhenko, Adam English, Harriet Dashnow, Guilherme De Sena Brandine, Tom Mokveld, William J Rowell, Caitlin Karniski, Zev Kronenberg, Matt C Danzi, Warren A Cheung, Chengpeng Bi, Emily Farrow, Aaron Wenger, Khi Pin Chua, Verónica Martínez-Cerdeño, Trevor D Bartley, Peng Jin, David L Nelson, Stephan Zuchner, Tomi Pastinen, Aaron R Quinlan, Fritz J Sedlazeck, Michael A Eberle

Faculty, Staff and Students Publications

Tandem repeat (TR) variation is associated with gene expression changes and numerous rare monogenic diseases. Although long-read sequencing provides accurate full-length sequences and methylation of TRs, there is still a need for computational methods to profile TRs across the genome. Here we introduce the Tandem Repeat Genotyping Tool (TRGT) and an accompanying TR database. TRGT determines the consensus sequences and methylation levels of specified TRs from PacBio HiFi sequencing data. It also reports reads that support each repeat allele. These reads can be subsequently visualized with a companion TR visualization tool. Assessing 937,122 TRs, TRGT showed a Mendelian concordance of …

Cancer Drug-Tolerant Persister Cells: From Biological Questions To Clinical Opportunities, Mariangela Russo, Mengnuo Chen, Elisa Mariella, Haoning Peng, Sumaiyah K Rehman, Elena Sancho, Alberto Sogari, Tzen S Toh, Nathalie Q Balaban, Eduard Batlle, Rene Bernards, Mathew J Garnett, Matthew Hangauer, Eleonora Leucci, Jean-Christophe Marine, Catherine A O'Brien, Yaara Oren, E Elizabeth Patton, Caroline Robert, Susan M Rosenberg, Shensi Shen, Alberto Bardelli

Faculty, Staff and Students Publications

The emergence of drug resistance is the most substantial challenge to the effectiveness of anticancer therapies. Orthogonal approaches have revealed that a subset of cells, known as drug-tolerant 'persister' (DTP) cells, have a prominent role in drug resistance. Although long recognized in bacterial populations which have acquired resistance to antibiotics, the presence of DTPs in various cancer types has come to light only in the past two decades, yet several aspects of their biology remain enigmatic. Here, we delve into the biological characteristics of DTPs and explore potential strategies for tracking and targeting them. Recent findings suggest that DTPs exhibit …