Chemical Engineering Commons^™

A Mechanistic Model Of Early Fcεri Signaling: Lipid Rafts And The Question Of Protection From Dephosphorylation, Dipak Barua, Byron Goldstein

Chemical and Biochemical Engineering Faculty Research & Creative Works

We present a model of the early events in mast cell signaling mediated by FcεRI where the plasma membrane is composed of many small ordered lipid domains (rafts), surrounded by a non-order region of lipids consisting of the remaining plasma membrane. The model treats the rafts as transient structures that constantly form and breakup, but that maintain a fixed average number per cell. The rafts have a high propensity for harboring Lyn kinase, aggregated, but not unaggregated receptors, and the linker for the activation of T cells (LAT). Phosphatase activity in the rafts is substantially reduced compared to the nonraft …

Capillary And Microchip Electrophoresis For The Monitoring Of Disease Causing Amyloid Proteins, Elizabeth Nancy Pryor

Graduate Theses and Dissertations

The detection of oligomers and aggregates formed by two amyloid proteins, insulin and amyloid-beta (AB), is of particular importance due to the role which these species play in Diabetes and Alzheimer's disease, respectively. However, existing techniques are limited in the ability to detect insulin and AB; oligomers due to the fact that these early aggregates are transient, present at low concentrations, and difficult to isolate. Improvements must be made to existing techniques or alternative techniques must be explored in order to identify and quantify the size of these oligomeric and aggregate species without disrupting their structure.

Capillary and microchip electrophoresis …

Modeling, Fabrication And Characterization Of Scalable Electroless Gold Plated Nanostructures For Enhanced Surface Plasmon Resonance, Gyoung Gug Jang

Graduate Theses and Dissertations

The scientific and industrial demand for controllable thin gold (Au) film and Au nanostructures is increasing in many fields including opto-electronics, photovoltaics, MEMS devices, diagnostics, bio-molecular sensors, spectro-/microscopic surfaces and probes. In this study, a novel continuous flow electroless (CF-EL) Au plating method is developed to fabricate uniform Au thin films in ambient condition. The enhanced local mass transfer rate and continuous deposition resulting from CF-EL plating improved physical uniformity of deposited Au films and thermally transformed nanoparticles (NPs). Au films and NPs exhibited improved optical photoluminescence (PL) and surface plasmon resonance (SPR), respectively, relative to batch immersion EL (BI-EL) …

Colorimetric Oxygen Imaging And Quantification With Easily Accessible Optical Devices, Satya Achanta, Sanghan Park, Chang-Soo Kim

Electrical and Computer Engineering Faculty Research & Creative Works

Optical oxygen imaging is essential in monitoring two-dimensional analysis of oxygen distribution. Two easily accessible optical devices were used for oxygen analysis to demonstrate the feasibility of an innovatively simple method. a light panel screen with light-emitting diode (LED) backlight was used as a light source to excite a luminophore film responsive to oxygen. Meso-scale fluidic sensor platform was prepared using porphyrin complex (PtOEP) as the luminophore embedded within ethyl cellulose (EC) polymer matrix. Green LED light uniformly displayed from the light panel excited the luminophore film to exhibit two-dimensional luminescence distribution corresponding to wet gaseous oxygen. a color camera …

Fabrication Of Cao-Nao-Sio2/Tio2 Scaffolds For Surgical Applications, A. W. Wren, A. Coughlan, K. E. Smale, S. T. Misture, B. P. Mahon, O. M. Clarkin, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

A series of titanium (Ti) based glasses were formulated (0.62 SiO₂-0.14 Na₂O-0.24 CaO, with 0.05 mol% TiO₂ substitutions for SiO₂) to develop glass/ceramic scaffolds for bone augmentation. Glasses were initially characterised using X-ray diffraction (XRD) and particle size analysis, where the starting materials were amorphous with 4.5 μm particles. Hot stage microscopy and high temperature XRD were used to determine the sintering temperature (̃700 °C) and any crystalline phases present in this region (Na₂Ca₃Si₆O₁₆, combeite and quartz). Hardness testing revealed that the Ti-free control (ScC- …

Site-Specific Metallization Of Multiple Metals On A Single Dna Origami Template, Bibek Uprety

Theses and Dissertations

This work examines the selective deposition of two different metals on the same DNA origami template for nanofabrication. DNA, with adjustable size and shape serves as a suitable template for fabricating metal junctions in the nanometer domain via bottom-up assembly. Bottom-up assembly utilizes the recognition capability of molecules like DNA to self-assemble and form structures. In this regard, DNA origami provides a useful means for forming nanostructures by folding single-stranded DNA into different two and three dimensional shapes. Selective deposition of metal on specific locations of a DNA template is essential for making DNA-templated electronic circuits.Site-specific metallization of DNA origami …

Reactive Rayleigh–Taylor Turbulent Mixing: A One-Dimensional-Turbulence Study, E.D. Gonzalez-Juez, A.R. Kerstein, D.O. Lignell

Faculty Publications

We study the problem of reactive Rayleigh–Taylor turbulence in the Boussinesq framework using one-dimensional-turbulence (ODT) simulations. In this problem a reaction zone between overlying heavy/cold reactants and underlying light/hot products moves against gravity. First, we show that ODT results for global quantities in non-reactive Rayleigh–Taylor turbulence are within those from direct numerical simulations (DNS). This comparison give us confidence in using ODT to study unexplored flow regimes in the reactive case. Then, we show how ODT predicts an early stage of reactive Rayleigh–Taylor turbulence that behaves similarly to the non-reactive case, as observed in previous DNS. More importantly, ODT indicates …

Fib/Sem-Based Calculation Of Tortuosity In A Porous Licoo2 Cathode For A Li-Ion Battery, T. Hutzenlaub, A. Asthana, J. Becker, D. R. Wheeler, R. Zengerle, S. Thiele

Faculty Publications

We present a new method to quantify tortuosity in the porous, LiCoO2 cathode of a Li-ion battery. The starting point is a previously published 3D reconstruction from FIB/SEM images with three phases, the active material domain, carbon-binder domain and pore space. Based on this geometrical configuration, we compute effective diffusivities, from which we in turn derive tortuosity values for the pore space ranging between 5 and 11.6 for the three spatial directions. In a next step, we compare our approach to an imaging method that employs back-filling material. These methods do not differentiate between the carbon-binder domain and the pore …

Incorporation Of Catalytic Dehydrogenation Into Fischer-Tropsch Synthesis To Significantly Reduce Carbon Dioxide Emissions, Gerald P. Huffman

Chemical and Materials Engineering Faculty Patents

A new method of producing liquid transportation fuels from coal and other hydrocarbons that significantly reduces carbon dioxide emissions by combining Fischer-Tropsch synthesis with catalytic dehydrogenation is claimed. Catalytic dehydrogenation (CDH) of the gaseous products (C1-C4) of Fischer-Tropsch synthesis (FTS) can produce large quantities of hydrogen while converting the carbon to multi-walled carbon nanotubes (MWCNT). Incorporation of CDH into a FTS-CDH plant converting coal to liquid fuels can eliminate all or most of the CO₂ emissions from the water-gas shift (WGS) reaction that is currently used to elevate the H₂ level of coal-derived syngas for FTS. Additionally, the …

Ultrasound-Induced Phase Change Of Emulsion Droplets For Targeted Gene And Drug Delivery, James R. Lattin

Theses and Dissertations

This dissertation explores the potential of using perfluorocarbon emulsion droplets to add an ultrasound-sensitive element to drug delivery systems. These emulsion droplets may be induced to vaporize with ultrasound; during the rarefactional phase of an ultrasound wave, the pressure around the droplets may fall below the vapor pressure of the liquid forming the emulsion, providing a thermodynamic potential for vaporization. This ultrasound-induced phase change of the emulsion droplet could release therapeutics attached to the droplet surface or aid in drug delivery due to mechanical effects associated with vaporization and expansion, similar to the ability of cavitating bubbles to aid in …

Beyond Gel Electrophoresis: Microfluidic Separations, Fluorescence Burst Analysis, And Dna Stretching, Kevin D. Dorfman, Scott B. King, Daniel W. Olson, Joel D. P. Thomas, Douglas R. Tree

Faculty Publications

This review addresses methods for obtaining sequence information directly from unamplified genomic length DNA. Our generic starting point is a large piece of DNA that contains many thousands of base pairs (kilobase pairs, kbp) or even millions of base pairs (megabase pairs, Mbp). We would like to determine the genomic distance between two repeats of a given sequence, indicated by the red dots on the coiled DNA molecule in Figure 1. Let us consider the case where these sequences are restriction sites, which can be selectively cut using proteins known as restriction enzymes. For decades, gel electrophoresis served as the …

Physico-Chemical, And Sensory Properties Of Soy Based Gouda Cheese Analog Made From Different Concentration Of Fat, Sodium Citrate And Various Cheese Starter Cultures, Abu Amar, Ingrid Suryanti Surono

Makara Journal of Technology

Gouda cheese analog (GCA) was made using soy protein isolate (SPI), skim milk powder (SMP), fat (palm fat and butter fat), and water (W) at optimal ratio of SPI : SMP : F : W = 14 : 6 : 20 : 60. The effects of butter fat, sodium citrate, and cheese starter culture on the sensory properties of ripened product were assessed by preference test, hedonic test, and the texture profile analysis (TPA) of GCA. The free fatty acids, water-soluble nitrogen, and reduction in pH value of progel were also measured. The use of 100% butter fat (BF) produced …

Effects Of Deposition Parameters And Oxygen Addition On Properties Of Sputtered Indium Tin Oxide Films, Badrul Munir, Rachmat Adhi Wibowo, Kim Kyoo Ho

Makara Journal of Technology

Indium tin oxide (ITO) films were sputtered on corning glass substrate. Oxygen admixture and sputtering deposition parameters were optimized to obtain the highest transparency as well as lowest resistivity. Structural, electrical and optical properties of the films were then examined. Increasing deposition rate and film thickness changed the crystallographic orientation from (222) to (400) and (440), as well as higher surface roughness. It was necessary to apply substrate heating during reposition to get films with better crystallinity. The lowest resistivity of 5.36 x 10-4 Ω•cm was obtained at 750 nm film thickness. The films’ resistivity was increased by addition of …

The Effect Of Rubber Mixing Process On The Curing Characteristics Of Natural Rubber, Abu Hasan, Rochmadi Rochmadi, Hary Sulistyo, Suharto Honggokusumo

Makara Journal of Technology

This research is aimed at studying the relationship between rubber mixing processes and curing characteristics of natural rubber. The curing characteristic analysis was carried out through a natural rubber formula having been masticated and mixed, followed by curing. As many as four mastication methods were finely applied; each respected four sequences of rubber mixing process. In the first method, rubber was masticated for 5 minutes and then rubber chemicals and carbon black N 330 were simultaneously added. In the second and the third methods, rubber was masticated for 1 minute and then carbon blacks and rubber chemicals were also simultaneously …

Observation Of Center Disaster Damage On Pariaman And Wasior Using Differential Sar Interferometry (Dinsar), Dodi Sudiana, Mia Rizkinia

Makara Journal of Technology

This study focuses on disaster observations in Pariaman (West Sumatera) and Wasior (Papua) using remote sensing techniques (differential SAR interferometry). Differential interferometry (DInSAR) method was performed on two PALSAR data sets with different acquisition months, i.e. about a month after and before disaster, respectively. The center damage of Pariaman earthquake and Wasior flood can be determined by deriving Land Subsidence using DInSAR method.

Coastal Physical Vulnerability Of Surabaya And Its Surrounding Area To Sea Level Rise, Sayidah Sulma, Eko Kusratmoko, Ratna Saraswati

Makara Journal of Technology

The study for coastal vulnerability to sea level rise was carried out in Surabaya and its surrounding area, it has focused on calculations of the physical vulnerability index were used coastal vulnerability index (CVI) methods. It was standardized by the multi criteria analysis (MCA) approach according to the study area. The score of each physical variable derived from remote sensing satellite data and the results of studies that have been done, such as modeling results and thematic maps, and then integrated into geographic information systems (GIS). Result of this study shows that the coastal areas of Gresik, Surabaya, and Sidoarjo …

The Effect Of Size And Crumb Rubber Composition As A Filler With Compatibilizer Pp-G-Ma In Polypropylene Blends And Sir-20 Compound On Mechanical And Thermal Properties, Erna Frida

Makara Journal of Technology

Having been researched the development of thermoplastic elastomer material of polypropylene and natural rubber SIR- 20 compound with Crumb Rubber as the filler. Reinforced polypropylene with size 60 mesh with 1 mm, and the composition of the Crumb rubber (30, 40, and 50) wt%. Observed mechanical properties are tensile strength, fracture elongation, Young's modulus, tear strength and impact strength. Thermal properties are analyzed by DSC and DTA/TGA. It is acquired that for the size of 60 mesh crumb rubber tensile strength, fracture elongation, Young’s modulus, tear strength and impact strength are bigger than 1mm size. The addition of 60 mesh …

Development Of Local-Economic-Development Small And Medium Industries (Led-Sme) In East Java, Rachmad Hidayat, Sabarudin Akhmad

Makara Journal of Technology

This paper presents the effects of Indonesian government’s developmental efforts of assistance and training performed on the growth of LED-SME business units and business performance. Both parameters of the government’s assistance and training were used to analyze the impact to the growth and performance of business unit. To achieve a comprehensive result, samples acquired in this research were about 190 entrepreneurs and managers of LED-SME from East Java. Based on the parameters above, there are five hypotheses made to prove the relationship of the assistance and training to the growth and performance of business units. The structural equation modeling (SEM) …

Cdm Potential In Palm Solid Waste Cogeneration As An Alternative Energy In Aceh Province, Mahidin Mahidin, Izarul Machdar, Muhammad Faisal, Muhammad Nizar

Makara Journal of Technology

Empty Fruit Bunch (EFB) as a solid waste in Crude Palm Oil (CPO) industry does not utilized yet as an alternative energy source to generate electricity. It is well known that use of solid wate (biomass) as an energy source is part of the Clean Development Mechanism (CDM) scheme due to direct reduction of Green House Gases (GHGs) emission and provide a direct contribution to sustainable development. Utilization of EFB as a source of energy is very potential to be implemented in Aceh since this province has 25 CPO Mills at the moment which actively produce about 870,000 ton EFB …

Small Scale Experiment: Thermal Performance Comparison Between Fiber-Cement Roof And Photovoltaic Roof In Malang, Indonesia, Nurhamdoko Bonifacius, Sri Nastiti Nugrahani Ekasiwi

Makara Journal of Technology

Irradiation on the surface of photovoltaic module heats up the photovoltaic module itself and the room underneath the roof of integrated photovoltaic building in the tropics area. Room heating reduces thermal condition and photovoltaic module surface heating reduces its performance in generating electricity. This paper discusses an experiment of measuring the surface temperature of photovoltaic modules and fiber-cement roof surface as a comparison. This experiment also measures the impact of rising temperatures in each space underneath. It used small-scale mock-ups exposed to direct sunlight. The result of the experiment shows that photovoltaic roof surface temperature is lower than fiber-cement roof …