Biomedical Engineering and Bioengineering Commons^™

Role Of Hydrodynamic Behavior Of Dna Molecules In Dielectrophoretic Polarization Under The Action Of An Electric Field, Hui Zhao

Mechanical Engineering Faculty Research

A continuum model is developed to predict the dielectrophoretic polarizability of coiled DNA molecules under the action of an alternating current electric field. The model approximates the coiled DNA molecule as a charged porous spherical particle. The model explains the discrepancies among scaling laws of polarizability of different-sized DNA molecules with contour length and such discrepancies are attributed to different hydrodynamic behavior. With zero or one fitting parameter, theoretical predictions are in good agreement with various experimental data, even though in experiments there are some uncertainties in regard to certain parameters.

Sensory Motor Remapping Of Space In Human-Machine Interfaces, Ferdinando A. Mussa-Ivaldi, Maura Casadio, Zachary C. Danziger, Kristine M. Mosier, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

Studies of adaptation to patterns of deterministic forces have revealed the ability of the motor control system to form and use predictive representations of the environment. These studies have also pointed out that adaptation to novel dynamics is aimed at preserving the trajectories of a controlled endpoint, either the hand of a subject or a transported object. We review some of these experiments and present more recent studies aimed at understanding how the motor system forms representations of the physical space in which actions take place. An extensive line of investigations in visual information processing has dealt with the issue …

Effects Of Acute Rho Kinase Inhibition On Chronic Hypoxia-Induced Changes In Proximal And Distal Pulmonary Arterial Structure And Function, Rebecca R. Vanderpool, Ah Ram Kim, Robert C. Molthen, Naomi Chesler

Biomedical Engineering Faculty Research and Publications

Hypoxic pulmonary hypertension (HPH) is initially a disease of the small pulmonary arteries. Its severity is usually quantified by pulmonary vascular resistance (PVR). Acute Rho kinase inhibition has been found to reduce PVR toward control values in animal models, suggesting that persistent pulmonary vasoconstriction is the dominant mechanism for increased PVR. However, HPH may also cause proximal arterial changes, which are relevant to right ventricular (RV) afterload. RV afterload can be quantified by pulmonary vascular impedance, which is obtained via spectral analysis of pulsatile pressure-flow relationships. To determine the effects of HPH independent of persistent pulmonary vasoconstriction in proximal and …

Distal Radioulnar Joint Biomechanics And Forearm Muscle Activity, Joseph Scott Bader

University of Kentucky Doctoral Dissertations

Optimal management of fractures, post-traumatic arthritis and instability of the distal radioulnar joint (DRUJ) requires an understanding of the forces existing across this joint as a function of the activities of daily living. However, such knowledge is currently incomplete. The goal of this research was to quantify the loads that occur at the DRUJ during forearm rotation and to determine the effect that individual muscles have on those loads.

Human and cadaver studies were used to analyze the shear (A-P), transverse (M-L) and resultant forces at the DRUJ and to determine the role that 15 individual muscles had on those …

Nanosecond Pulsed Electric Field Induced Cytoskeleton, Nuclear Membrane And Telomere Damage Adversely Impact Cell Survival, Michael W. Stacey, P. Fox, S. Buescher, Juergen F. Kolb

Bioelectrics Publications

We investigated the effects of nanosecond pulsed electric fields (nsPEF) on three human cell lines and demonstrated cell shrinkage, breakdown of the cytoskeleton, nuclear membrane and chromosomal telomere damage. There was a differential response between cell types coinciding with cell survival. Jurkat cells showed cytoskeleton, nuclear membrane and telomere damage that severely impacted cell survival compared to two adherent cell lines. Interestingly, disruption of the actin cytoskeleton in adherent cells prior to nsPEF exposure significantly reduced cell survival. We conclude that nsPEF applications are able to induce damage to the cytoskeleton and nuclear membrane. Telomere sequences, regions that tether and …

Direct Forcing And Heating Immersed Boundary- Lattice Boltzmann Method For Arterial Wall Thermography, Oluyinka Olugbenga Bamiro

Dissertations

Vulnerable atherosclerotic plaques have high probability of rupture and are characterized by non-homogenous temperature along the arterial wall. The nonhomogeneous temperature is attributed to the accumulation of heat releasing inflammatory cells in the arterial wall. Rupture of the vulnerable plaque can lead to acute coronary syndrome and sudden cardiac death. Arterial wall thermography (AWT) can be applied to detect the presence of temperature hot spots along the arterial wall by using temperature measurement devices and provide an early detection of a vulnerable atherosclerotic plaque. AWT, however, is invasive in nature.

Computational fluid and heat transport models provide a more efficient …

Automatic Detection Of Aircraft Emergency Landing Sites, Yu-Fei Shen, Zia-Ur Rahman, Dean Krusienski, Jiang Li, Zia-Ur Rahman (Ed.), Stephen E. Reichenbach (Ed.), Mark Allen Neifeld (Ed.)

Electrical & Computer Engineering Faculty Publications

An automatic landing site detection algorithm is proposed for aircraft emergency landing. Emergency landing is an unplanned event in response to emergency situations. If, as is unfortunately usually the case, there is no airstrip or airfield that can be reached by the un-powered aircraft, a crash landing or ditching has to be carried out. Identifying a safe landing site is critical to the survival of passengers and crew. Conventionally, the pilot chooses the landing site visually by looking at the terrain through the cockpit. The success of this vital decision greatly depends on the external environmental factors that can impair …

Bcc Skin Cancer Diagnosis Based On Texture Analysis Techniques, Shao-Hui Chuang, Xiaoyan Sun, Wen-Yu Chang, Gwo-Shing Chen, Adam Huang, Jiang Li, Frederic D. Mckenzie

Electrical & Computer Engineering Faculty Publications

In this paper, we present a texture analysis based method for diagnosing the Basal Cell Carcinoma (BCC) skin cancer using optical images taken from the suspicious skin regions. We first extracted the Run Length Matrix and Haralick texture features from the images and used a feature selection algorithm to identify the most effective feature set for the diagnosis. We then utilized a Multi-Layer Perceptron (MLP) classifier to classify the images to BCC or normal cases. Experiments showed that detecting BCC cancer based on optical images is feasible. The best sensitivity and specificity we achieved on our data set were 94% …

Development Of A Rigid Body Computational Model For Investigation Of Wrist Biomechanics, Benjamin Majors

Theses and Dissertations

The wrist is one of the most complex joints in the human body. As such, the wrist joint is difficult to model due to the number of bones involved and its intricate soft tissue interactions. Many studies have attempted modeling the wrist previously; however, the majority of these studies simplify the joint into two-dimensions or idealized mechanical joints to reduce the complexity of the simulation. While these approaches still yield valuable information, the omission of a third-dimension or geometry defined movements limits the models’ usefulness in predicting joint function under non-idealized conditions. Therefore, the goal of this study was to …

Modeling Of Aortic Valve Anatomic Geometry From Clinical Multi Detector-Row Computed Tomography Images, Gregory A. Book

Master's Theses

Transcatheter aortic valve implantation (TAVI) is an emerging and viable alternative to surgical valve replacement. A TAVI procedure involves insertion of a catheter into the heart through an artery or transapically, and expanding valve stent in place. This procedure dramatically reduces the recovery time by eliminating the need for open heart surgery. Understanding the biomechanics of the stent-valve interaction is crucial for proper device deployment and function. In this study, we examine the extraction of valve geometries and creation of valve models from multi-detector row computed tomography (MDCT) images that may eventually be used to model stent expansion on a …

Incorporating Feedback From Multiple Sensory Modalities Enhances Brain–Machine Interface Control, Aaron J. Suminski, Dennis C. Tkach, Andrew H. Fagg, Nicholas G. Hatsopoulos

Biomedical Engineering Faculty Research and Publications

The brain typically uses a rich supply of feedback from multiple sensory modalities to control movement in healthy individuals. In many individuals, these afferent pathways, as well as their efferent counterparts, are compromised by disease or injury resulting in significant impairments and reduced quality of life. Brain–machine interfaces (BMIs) offer the promise of recovered functionality to these individuals by allowing them to control a device using their thoughts. Most current BMI implementations use visual feedback for closed-loop control; however, it has been suggested that the inclusion of additional feedback modalities may lead to improvements in control. We demonstrate for the …

4-D Modeling Of Displacement Vector Fields For Improved Radiation Therapy, Elizabeth Zachariah

Theses and Dissertations

In radiation therapy, it is imperative to deliver high doses of radiation to the tumor while reducing radiation to the healthy tissue. Respiratory motion is the most significant source of errors during treatment. Therefore, it is essential to accurately model respiratory motion for precise and effective radiation delivery. Many approaches exist to account for respiratory motion, such as controlled breath hold and respiratory gating, and they have been relatively successful. They still present many drawbacks. Thus, research has been expanded to tumor tracking. This paper presents a spatio-temporal model for four dimensional CT reconstruction. The method begins with a set …

Modeling Heat Transfer During Cooling Of Ready-To-Eat Meat And Poultry Products Using Three-Dimensional Finite Element Analysis And Web-Based Simulation, Jihan F. Cepeda Jimenez

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

The meat industry is required to comply with processing performance standards for preventing the growth of foodborne pathogens in products. These performance standards, established by the United States Department of Agriculture - Food Safety and Inspection Service (USDA-FSIS) require a reduction of Salmonella spp (lethality standard) and limit the growth of sporeforming bacteria (stabilization standard) in certain processed meat products. In general, strategies used to comply with these standards are associated with thermal processing. Meat processors have difficulties complying with these performance standards. Moreover, thermal processing deviations are an issue in the meat industry that generate uncertainty regarding the safety …

Synthesis And Characterization Of Electrospun Gelatin/Dendrimer Scaffold Encapsulated With A Silver As A Potential Antimicrobial Wound Dressing, Alpana Dongargaonkar

Theses and Dissertations

A novel nanofiber scaffold was fabricated and characterized as a potential antimicrobial wound dressing. Half generation polyamidoamine (PAMAM) dendrimer G3.5 was covalently conjugated to gelatin. Gelatin alone or with gelatin-dendrimer conjugates was electrospun into nanofiber scaffolds. Gelatin is a derivative of natural collagen, and it is biocompatible, non-toxic and inexpensive, making it a desirable component in a wound dressing. Dendrimers are synthetic polymers comprising of a central core, internal branches and reactive surface groups. They provide a structurally controlled architecture for drug release. Silver was incorporated into the scaffold in situ due to its broad spectrum of antimicrobial properties. The …

Development Of Electroencephalography Based Brain Controlled Switch And Nerve Conduction Study Simulator Software, Kai Qian

Theses and Dissertations

This thesis investigated the development of an EEG-based brain controlled switch and the design of a software for nerve conduction study. For EEG-based brain controlled switch, we proposed a novel paradigm for an online brain-controlled switch based on Event-Related Synchronizations (ERDs) following external sync signals. Furthermore, the ERD feature was enhanced by 3 event-related moving averages and the performance was tested online. Subjects were instructed to perform an intended motor task following an external sync signal in order to turn on a virtual switch. Meanwhile, the beta-band (16-20Hz) relative ERD power (ERD in reverse value order) of a single EEG …

Development Of An Integrated Soil Properties Mapping System, Rajveer S. Dhillon

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

One of the main goals of precision agriculture (PA) is to define spatial variability in soil properties within an agricultural field to make decisions that can maximize profitability and reduce negative environmental impact. Various soil sensor systems have been developed over the years to map soil properties on-the-go. In this study, an Integrated Soil Mapping System (ISMS) was developed to predict soil water content, soil organic matter, and soil mechanical resistance on-the-go using a capacitance moisture sensor, an optical sensor, and a load cell sensor respectively. These sensors were mounted on the ISMS for acquiring three different data layers at …

A Microfluidic Device To Establish Concentration Gradients Using Reagent Density Differences, Qingjun Kong, Richard A. Able, Jr., Veronica Dudu, Maribel Vazquez

Publications and Research

Microfabrication has become widely utilized to generate controlled microenvironments that establish chemical concentration gradients for a variety of engineering and life science applications. To establish microfluidic flow, the majority of existing devices rely upon additional facilities, equipment, and excessive reagent supplies, which together limit device portability as well as constrain device usage to individuals trained in technological disciplines. The current work presents our laboratory-developed bridged microLane system, which is a stand-alone device that runs via conventional pipette loading and can operate for several days without need of external machinery or additional reagent volumes. The bridged microLane is a two-layer polydimethylsiloxane …

Influence Of Topography Of Endovascular Stent Material On Smooth Muscle Cell Response, Vipul Taneja

All Theses

Although implantation of endovascular stents for the treatment of coronary and peripheral artery diseases has been one of the most rapidly used medical interventions, significant limitations in terms of a restenosis rate of 10-30% still persists. Neointimal hyperplasia characterized by a phenotypic shift of smooth muscle cells from contractile to synthetic type, has been deemed to be the predominant cause of restenosis. A number of stent surface parameters, including topography, have been attributed to play an important role in stent performance. Although endothelial cell and thrombotic response to surface roughness have been well evaluated, the effect of topography of the …

Neomycin-Enhanced Carbodiimide Cross-Linking For Glycosaminoglycan Stability In Bioprosthetic Heart Valves, Joshua Leong

All Theses

Valvular heart diseases lead to over 290,000 heart valve replacements worldwide each year, and approximately half of these involve replacement with a bioprosthetic heart valve (BHV) [1]. BHVs exhibit excellent hemocompatibility, but suffer from inadequate long-term durability with most adult implanted valves failing within 12 to 15 years after implantation [2]. Although this may be adequate for some individuals, BHV implantation may be contraindicated in younger individuals to avoid reoperation. Even in elder recipients, valve dysfunction can still cause death or reoperation that could be avoided with increased BHV durability. Therefore, investigation into methods of increasing BHV durability can not …

Modulated Properties Of Fully Absorbable Bicomponent Meshes, Shawn Peniston

All Dissertations

Current meshes used for soft-tissue repair are mostly composed of single component, nonabsorbable yarn constructions, limiting the ability to modulate their properties. This situation has left the majority of soft tissue repair load-bearing applications to suffer distinctly from undesirable features associated, in part, with mesh inability to (1) possess short-term stiffness to facilitate tissue stability during the development of wound strength; (2) gradually transfer the perceived mechanical load as the wound builds mechanical integrity; and (3) provide compliance with load transfer to the remodeling and maturing mesh/tissue complex. The likelihood of long-term complications is reduced for fully absorbable systems with …