Biomedical Engineering and Bioengineering Commons^™

Auto-Fluorescence Lifetime And Light Reflectance Spectroscopy For Breast Cancer Diagnosis: Potential Tools For Intraoperative Margin Detection, Vikrant Sharma, Shivaranjani Shivalingaiah, Yan Peng, David Euhus, Zygmunt Gryczynski, Hanli Liu

Bioengineering Faculty Publications - Archive

This study investigates the use of two spectroscopic techniques, auto-fluorescence lifetime measurement (AFLM) and light reflectance spectroscopy (LRS), for detecting invasive ductal carcinoma (IDC) in human ex vivo breast specimens. AFLM used excitation at 447 nm with multiple emission wavelengths (532, 562, 632, and 644 nm), at which autofluorescence lifetimes and their weight factors were analyzed using a double exponent model. LRS measured reflectance spectra in the range of 500-840 nm and analyzed the spectral slopes empirically at several distinct spectral regions. Our preliminary results based on 93 measured locations (i.e., 34 IDC, 31 benign fibrous, 28 adipose) from 6 …

Investigating The Role Of Mechanosensitive Ion Channels In Urothelial Cell Pressure Mechanotransduction, Shawn Olsen

All Dissertations

Overactive bladder (OAB) is a bladder disorder that is characterized by bladder storage symptoms of urgency with or without urge incontinence, frequency, nocturia, and, as of 2003, affected approximately 16.5% of adults in the United States with an annual treatment cost of over $65 billion. While therapies are available to mitigate the symptoms of OAB, there are no treatments for the cause of OAB, due to the lack of understanding of the etiology of the disorder. Recent research has provided evidence that the bladder urothelium is not just a passive barrier, but is also sensitive to various chemical and mechanical …

A Novel Haptic Simulator For Evaluating And Training Salient Force-Based Skills For Laparoscopic Surgery, Ravikiran Singapogu

All Dissertations

Laparoscopic surgery has evolved from an 'alternative' surgical technique to currently being considered as a mainstream surgical technique. However, learning this complex technique holds unique challenges to novice surgeons due to their 'distance' from the surgical site. One of the main challenges in acquiring laparoscopic skills is the acquisition of force-based or haptic skills. The neglect of popular training methods (e.g., the Fundamentals of Laparoscopic Surgery, i.e. FLS, curriculum) in addressing this aspect of skills training has led many medical skills professionals to research new, efficient methods for haptic skills training.
The overarching goal of this research was to demonstrate …

Ultrastable Synergistic Tetravalent Rna Nanoparticles For Targeting To Cancers, Farzin Haque, Dan Shu, Yi Shu, Luda S. Shlyakhtenko, Piotr G. Rychahou, B. Mark Evers, Peixuan Guo

Pharmaceutical Sciences Faculty Publications

One of the advantages of nanotechnology is the feasibility to construct therapeutic particles carrying multiple therapeutics with defined structure and stoichiometry. The field of RNA nanotechnology is emerging. However, controlled assembly of stable RNA nanoparticles with multiple functionalities which retain their original role is challenging due to refolding after fusion. Herein, we report the construction of thermodynamically stable X-shaped RNA nanoparticles to carry four therapeutic RNA motifs by self-assembly of reengineered small RNA fragments. We proved that each arm of the four helices in the X-motif can harbor one siRNA, ribozyme, or aptamer without affecting the folding of the central …

Stabilization Of Extracellular Matrix Components In Bioprosthetic Heart Valves Using Neomycin And Pentagalloyl Glucose Enhanced Crosslinking, Daniel Tripi

All Theses

Bioprosthetic heart valves (BHVs) fail within 12-15 years of implantation due to limited durability. This limits their application to elderly population. Younger patients with contraindications for long-term anticoagulant therapy necessary for mechanical heart valves may also receive BHVs. Investigation into improving valve durability can lead to longer implant life, increased quality of life for patients receiving BHVs, and a broadened patient demographic.
Current BHVs are chemically treated with glutaraldehyde (GLUT) to stabilize collagen via chemical crosslinking and to reduce tissue antigenicity. GLUT fails to adequately stabilize elastin and glycosaminoglycans (GAGs), essential extracellular matrix components for valve function and durability. Degradation …

Effects Of Physiological Dynamic Compression Loading On Gold Nanoparticle Permeation Of Articular Cartilage, Britton Mccaskill

All Theses

Articular cartilage is essential part of the human body that aids in support and locomotion. It has unique biochemical and biomechanical properties that allow it to act as a shock absorber to disperse and distribute loading of the joints. However, it has a limited capacity to repair itself because it is not vascularized and must receive its nutrients from the surrounding synovial fluid. Articular cartilage damage can lead to many pathological conditions, including osteoarthritis. Currently, there are many surgical treatment methods that repair some of the damage if it is localized, but for widespread degradation seen in osteoarthritis, there are …

The Biomechanical Role Of Scaffolds In Augmented Rotator Cuff Tendon Repairs, Amit Aurora, Jesse A. Mccarron, Antonie J. Van Den Bogert, Jorge E. Gatica, Joseph P. Iannotti, Kathleen A. Derwin

Mechanical Engineering Faculty Publications

Background

Scaffolds continue to be developed and used for rotator cuff repair augmentation; however, the appropriate scaffold material properties and/or surgical application techniques for achieving optimal biomechanical performance remains unknown. The objectives of the study were to simulate a previously validated spring-network model for clinically relevant scenarios to predict: (1) the manner in which changes to components of the repair influence the biomechanical performance of the repair and (2) the percent load carried by the scaffold augmentation component.

Materials and methods

The models were parametrically varied to simulate clinically relevant scenarios, namely, changes in tendon quality, altered surgical technique(s), and …

Analysis Of The Effect Of Feeding Regimen On Gh/Igf Axis In Channel Catfish (Ictalurus Punctatus), Samantha Puckett

Biological and Agricultural Engineering Undergraduate Honors Theses

Channel catfish (Ictalurus punctatus) are the most widely farmed aquatic animal in the United States. Assessing the effect of feeding regimens on their overall growth requires grow-out trials and a subsequent inefficient use of time and money. The growth hormone (GH)/insulin-like growth factor-1 (IGF-1) axis regulates growth based upon environmental factors such as feed intake in many teleost fish species. In order to increase the efficiency of aquaculture, the components of the GH/IGF-1 axis might be used as endocrine biomarkers to evaluate instantaneous growth rate. The goal of this study was to better understand the effects of feeding regimen on …

Experimental Composite Guidance Conduits For Peripheral Nerve Repair: An Evaluation Of Ion Release, X. F. Zhang, A. Coughlan, H. O'Shea, Mark R. Towler, S. Kehoe, D. Boyd

Chemical and Biochemical Engineering Faculty Research & Creative Works

Poly (lactide-co-glycolide) (PLGA) - Pluronic F127 - glass composites have demonstrated excellent potential, from the perspective of controlled mechanical properties and cytocompatibility, for peripheral nerve regeneration. In addition to controlling the mechanical properties and cytotoxicity for such composite devices, the glass component may mediate specific responses upon implantation via degradation in the physiological environment and release of constituent elements. However, research focused on quantifying the release levels of such therapeutic ions from these experimental medical devices has been limited. To redress the balance, this paper explores the ion release profiles for Si⁴⁺, Ca²⁺, Na⁺, …

Changes In In Vivo Knee Contact Forces Through Gait Modification, Allison Kinney, Thor F. Besier, Amy Slider, Scott L. Delp, Darryl D. D'Lima, Benjamin J. Fregly

Mechanical and Aerospace Engineering Faculty Publications

Gait modification represents a non-invasive method for reducing knee joint loading in patients with knee osteoarthritis. Previous studies have shown that a variety of gait modifications are effective in reducing the external knee adduction moment. The external knee adduction moment is often used as a surrogate measure of medial compartment force. However, a recent study showed that reductions in the external knee adduction moment do not guarantee reductions in medial compartment loads. Therefore, direct measurement of changes in knee contact force is important for determining the effectiveness of gait modifications. A previous study found that medial thrust gait and walking …

Measurement Of The Oxidation State Of Mitochondrial Cytochrome C From The Neocortex Of The Mammalian Brain, Y. Sakata, M. Abajian, M. O. Ripple, R. Springett

Dartmouth Scholarship

Diffuse optical remission spectra from the mammalian neocortex at visible wavelengths contain spectral features originating from the mitochondria. A new algorithm is presented, based on analytically relating the first differential of the attenuation spectrum to the first differential of the chromophore spectra, that can separate and calculate the oxidation state of cytochrome c as well as the absolute concentration and saturation of hemoglobin. The algorithm is validated in phantoms and then tested on the neocortex of the rat during an anoxic challenge. Implementation of the algorithm will provide detailed information of mitochondrial oxygenation and mitochondrial function in physiological studies of …

Two-Dimensional Blood Flow Velocity Estimation Using Ultrasound Speckle Pattern Dependence On Scan Direction And Velocity, Tiantian Xu

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Cardiovascular disease is the leading cause death in the United States. Although emergency surgery and medicine can be used for cardiovascular disease treatment, the survivors will suffer for it afterwards. Ultrasound blood flow measurement provides a noninvasive way for cardiovascular diseases diagnosis. In this dissertation, three algorithms for blood flow velocity measurements were investigated and optimized. Feature tracking has been previously proposed for vector velocity measurement. In Chapter 3, the optimal amplitude and time thresholds for feature extraction were investigated to minimize flow estimate variance while providing sufficient spatial and temporal coverage of flow area. A new method of lateral …

Gallium Containing Glass Polyalkenoate Anti-Cancerous Bone Cements: Glass Characterization And Physical Properties, A. W. Wren, A. Coughlan, L. Placek, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

A gallium (Ga) glass series (0.48SiO₂-0.40ZnO-0.12CaO, with 0.08 mol% substitution for ZnO) was developed to formulate a Ga-containing Glass Polyalkenoate Cement (GPC) series. Network connectivity (NC) and X-ray Photoelectron Spectroscopy (XPS) was employed to investigate the role of Ga³⁺ in the glass, where it is assumed to act as a network modifier. Ga-GPC series was formulated with E9 and E11 polyacrylic acid (PAA) at 50, 55 and 60 wt% additions. E11 working times (T_w) ranged from 68 to 96 s (Lcon.) and 106 s for the Ga-GPCs (LGa-1 and LGa-2). Setting times (T_s) …

A Novel Method For Determining Acetabular Orientation, Sean Higgins

Theses and Dissertations

Enhanced knowledge of the acetabulum is of paramount importance in the diagnostic, planning, and execution stages of procedures and treatments targeting the hip joint. The convoluted and highly variable morphology of the structures comprising the bony pelvis make ascertaining measures of the acetabulum challenging. Furthermore, current methods for determining acetabular orientation assume symmetry between the separate halves of the pelvis by utilizing a coordinate system based on bilateral landmarks. The purpose of this study was to determine the three-dimensional orientation of the entire acetabulum. For this research, an improved programmatic method was developed for determining acetabular orientation using three-dimensional data. …

Upper Extremity Biomechanical Model For Evaluation Of Pediatric Joint Demands During Wheelchair Mobility, Alyssa J. Paul, Brooke A. Slavens, Adam Graf, Joseph Krzak, Lawrence Vogel, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

Current methods for evaluating upper extremity (UE) dynamics during pediatric wheelchair use are limited. We propose a new model to characterize UE joint kinematics and kinetics during pediatric wheelchair mobility. The bilateral model is comprised of the thorax, clavicle, scapula, upper arm, forearm, and hand segments. The modeled joints include: sternoclavicular, acromioclavicular, glenohumeral, elbow and wrist. The model is complete and is currently undergoing pilot studies for clinical application. Results may provide considerable quantitative insight into pediatric UE joint dynamics to improve wheelchair prescription, training and long term care of children with orthopaedic disabilities.

Storage And Loss Moduli Of Bone In Osteogenesis Imperfecta (Oi), Carolyne Albert, John Jameson, Jeffrey Toth, Peter A. Smith, Gerald F. Harris

Biomedical Engineering Faculty Research and Publications

No abstract provided.

Understanding The In Vivo Uptake Kinetics Of A Phosphatidylethanolamine-Binding Agent 99mTc-Duramycin, Said H. Audi, Zhixin Li, Joseph Capacete, Yu Liu, Wei Fang, Laura G. Shu, Ming Zhao

Biomedical Engineering Faculty Research and Publications

Introduction

^99mTc-Duramycin is a peptide-based molecular probe that binds specifically to phosphatidylethanolamine (PE). The goal was to characterize the kinetics of molecular interactions between ^99mTc-Duramycin and the target tissue.

Methods

High level of accessible PE is induced in cardiac tissues by myocardial ischemia (30 min) and reperfusion (120 min) in Sprague–Dawley rats. Target binding and biodistribution of ^99mTc-duramycin were captured using SPECT/CT. To quantify the binding kinetics, the presence of radioactivity in ischemic versus normal cardiac tissues was measured by gamma counting at 3, 10, 20, 60 and 180 min after injection. A partially inactivated form of …

Oral Delivery Of Peptide Drugs For Mitigation Of Crohn's Disease, Paul Blichmann

All Theses

Protein drugs are typically administered intravenously, but this practice has clear disadvantages such as widespread circulation and swift clearance from the body. Orally delivered protein drugs are not yet available but potentially offer improved distribution, retention, and activity by use of protective matrices and cell-specific targeting. Much work has been done on delayed release formulations for the upper intestine, but there has not been overwhelming evidence of protection of peptides from gastric conditions. In many instances the large intestine may be a better release target due to lower proteolytic activity. Afflictions of the colon such as Inflammatory Bowel Disease and …

The Formulation Of A Bone Targeted Drug Delivery System Of Poly(Glycolic Acid)-Poly(Ethylene Glycol) Coated Hydroxyapatite Nanoparticles For The Delivery Of Statins, Erika Jelen

All Theses

Bone is a form of mineralized connective tissue that provides strength and rigidity to the skeleton. The two primary components within bone tissue are an organic extracellular matrix, containing type I collagen, and an inorganic mineral component composed mainly of calcium phosphate hydroxyapatite crystals. Over time the microarchitecture of bone can break down due to a variety of different factors, mainly the onset of osteoporosis in post-menopausal women, Paget's disease, and the experience of a loss of gravity during space flight. Currently there are about ten million people in the United States alone suffering from osteoporosis.
The prevention of further …

The Effect Of A Navigational Aid On Training Of A Minimally Invasive Surgery Camera Task, Ketan Vidwans

Theses and Dissertations

Minimally Invasive Surgery (MIS) differs from Open Surgery as surgeons view the surgical site indirectly on a monitor. The view shown is typically from an angled endoscope off to one side of the surgery (i.e., uncollocated with the view of the hands). This makes camera navigation a challenging ability to learn. MIS thus requires longer training periods, more practice and mental effort to achieve proficiency. Current training setups and Operating Room (OR) environments lack appropriate real-time visual cues for navigation and other perception related information that could help with learning and performance in the OR. The purpose of this research …