Biomedical Engineering and Bioengineering Commons^™

Thermal Stability And Decomposition Of Diesel Fuel Under Subcritical And Supercritical Conditions, Ronghong Lin, Lawrence L. Tavlarides

Biomedical and Chemical Engineering - All Scholarship

A novel concept of clean diesel combustion using supercritical fluids is proposed and being investigated to address some key challenges encountered in the fuel and transportation sector. The core of this concept is to inject diesel fuel (DF) in the supercritical state to achieve clean, high-efficient combustion in diesel engines. Among other challenging issues that must be addressed for the implementation of this new concept is the thermal stability of DF and the potential decomposition and solid deposit formation under engine conditions. In this work, thermal stability of DF was experimentally evaluated under subcritical and supercritical conditions in both static …

Metacom: Automated Data Processing And Analysis Of Metagenomic Community Sequences, Cody A. Tramp, Charles D. Miller

Browse all Datasets

Advances in next generation sequencing technology have allowed metagenomic researchers to study the composition of bacterial communities through analysis of the vast numbers of sequence reads that these technologies generate. It is not feasible to analyze and interpret this large amount of data manually and individual research groups must create automated scripts and programs to analyze this data. Here, we present MetaCom, a program that offers a common set of analysis and organizational tools that can be used by research groups in the analysis of environmental samples. MetaCom is an open-source software tool that can process next generation sequencing output, …

Significance And Analysis Of Milia-Like Cysts In Dermoscopy Skin Lesion Images, Sneha K. Mahajan

Masters Theses

“Milia-like cysts (MLCs) are dermoscopic structures frequently observed in seborrheic keratoses(SKs), which are the most common type of skin lesions. Diverse appearances of these skin lesions make them difficult to differentiate from melanoma, a deadly type of skin cancer. Classified by size into two main groups, starry MLCs and cloudy MLCs, the presence of these structures in a skin lesion has been known to help differentiate benign lesions from melanoma. Though the presence of cloudy MLCs is not exclusively associated with SKs, they can be a useful tool to differentiate SKs from melanoma. This research study determines the statistical occurrence …

A Biocompatible Sic Rf Antenna For In-Vivo Sensing Applications, Shamima Afroz

USF Tampa Graduate Theses and Dissertations

A continuous glucose sensor employing radio frequency (RF) signals is presented using the biocompatible material Silicon Carbide (SiC). Unlike biosensors that require direct contact with interstitial fluids to trigger chemical reactions to operate, this biocompatible SiC sensor does not require a direct interface. The sensing mechanism for this SiC sensor is based upon a shift in resonant frequency, as a function of change in glucose levels, which electrically manifests itself as a change in blood permittivity and

conductivity. For in vivo applications the antenna sensor needs to operate inside the body environment, and it has been found that the best …

Slowing The Onset Of Hypoxia Increases Colony Forming Efficiency Of Connective Tissue Progenitor Cells In Vitro, Christopher M. Heylman, Tonya N. Caralla, Cynthia A. Boehm, Thomas E. Patterson, George F. Muschler

Biomedical Engineering

Background: Survival and colony formation by transplanted tissue derived connective tissue progenitor cells (CTPs) are thought to be important factors in the success of clinical tissue engineering strategies for bone regeneration. Transplantation of cells into defects larger than a few millimeters expose cells to a profoundly hypoxic environment. This study tested the hypothesis that delaying the onset of hypoxia will improve the survival and performance of CTPs in vitro.

Methods: To mimic declines seen in an avascular in vivo bone defect, colony forming efficiency by marrow derived nucleated cells was assessed under osteogenic conditions. Variation in the rate of …

Independent Component Analysis Enhancements For Source Separation In Immersive Audio Environments, Yue Zhao

Theses and Dissertations--Electrical and Computer Engineering

In immersive audio environments with distributed microphones, Independent Component Analysis (ICA) can be applied to uncover signals from a mixture of other signals and noise, such as in a cocktail party recording. ICA algorithms have been developed for instantaneous source mixtures and convolutional source mixtures. While ICA for instantaneous mixtures works when no delays exist between the signals in each mixture, distributed microphone recordings typically result various delays of the signals over the recorded channels. The convolutive ICA algorithm should account for delays; however, it requires many parameters to be set and often has stability issues. This thesis introduces the …

Development Of An Eeg Brain-Machine Interface To Aid In Recovery Of Motor Function After Neurological Injury, Elizabeth Salmon

Theses and Dissertations--Biomedical Engineering

Impaired motor function following neurological injury may be overcome through therapies that induce neuroplastic changes in the brain. Therapeutic methods include repetitive exercises that promote use-dependent plasticity (UDP), the benefit of which may be increased by first administering peripheral nerve stimulation (PNS) to activate afferent fibers, resulting in increased cortical excitability. We speculate that PNS delivered only in response to attempted movement would induce timing-dependent plasticity (TDP), a mechanism essential to normal motor learning. Here we develop a brain-machine interface (BMI) to detect movement intent and effort in healthy volunteers (n=5) from their electroencephalogram (EEG). This could be used in …

Noninvasive Near-Infrared Diffuse Optical Monitoring Of Cerebral Hemodynamics And Autoregulation, Ran Cheng

Theses and Dissertations--Biomedical Engineering

Many cerebral diseases are associated with abnormal cerebral hemodynamics and impaired cerebral autoregulation (CA). CA is a mechanism to maintain cerebral blood flow (CBF) stable when mean arterial pressure (MAP) fluctuates. Evaluating these abnormalities requires direct measurements of cerebral hemodynamics and MAP. Several near-infrared diffuse optical instruments have been developed in our laboratory for hemodynamic measurements including near-infrared spectroscopy (NIRS), diffuse correlation spectroscopy (DCS), hybrid NIRS/DCS, and dual-wavelength DCS flow-oximeter. We utilized these noninvasive technologies to quantify CBF and cerebral oxygenation in different populations under different physiological conditions/manipulations. A commercial finger plethysmograph was used to continuously monitor MAP. For investigating …

Effects Of Acute Stretch On Cardiac Electrical Properties In Swine, Anuj Agarwal

Theses and Dissertations--Biomedical Engineering

Stretch is known to result in an electrically less stable ventricular substrate, yet the reported effects of stretch on measured electrophysiological parameters have been inconsistent and even contradictory. The goal of this study was to evaluate the effects of acute mechanical stretch on cardiac electrical features thought to be key in generation of arrhythmia, namely restitution of action potential duration (APD), electrical memory, and onset of alternans.

Microelectrodes were used to record intracellular potentials pre, during, and post-stretch from isolated right ventricular tissues from swine. In separate experiments, the effects of two levels of stretch were quantified. Pacing protocols employing …

Hysteresis In Repolarization Of Cardiac Action Potentials: Effects Of Spatial Heterogeneity And Slow Repolarization Currents, Linyuan Jing

Theses and Dissertations--Biomedical Engineering

Repolarization alternans, i.e. beat-to-beat variation of repolarization of action potential, is proposed as a predictor of life-threatening arrhythmias. Restitution relates repolarization duration with its previous relaxation time, i.e. diatstolic interval (DI), and is considered a dominant mechanism for alternans. Previously, we observed that different repolarization durations at the same DI during decelerating and accelerating pacing, i.e. restitution displays hysteresis, which is a measure of “cardiac memory”.

Objective of the current study was to investigate in the pig 1) the mechanism for a previously observed hysteresis type phenomenon, where alternans, once started at higher heart rate, persists even when heart rate …

Development Of A Multilayered Association Polymer System For Sequential Drug Delivery, Sharath Kumar Chinnakavanam Sundararaj

Theses and Dissertations--Biomedical Engineering

As all the physiological processes in our body are controlled by multiple biomolecules, comprehensive treatment of certain disease conditions may be more effectively achieved by administration of more than one type of drug. Thus, the primary objective of this research was to develop a multilayered, polymer-based system for sequential delivery of multiple drugs. This particular device was designed aimed at the treatment of periodontitis, a highly prevalent oral inflammatory disease that affects 90% of the world population. This condition is caused by bacterial biofilm on the teeth, resulting in a chronic inflammatory response that leads to loss of alveolar bone …

Growth Plate Regeneration Using Polymer-Based Scaffolds Releasing Growth Factor, Amanda Clark

Theses and Dissertations--Biomedical Engineering

Currently growth plate fractures account for nearly 18.5% of fractures in children and can lead to stunted bone growth or angular deformation. If the body is unable to heal itself a bony bar forms, preventing normal bone growth. Clinical treatment involves removing the bony bar and replacing it with a filler substance, which causes poor results 60% of the time.

Using primarily poly(lactic-co-glycolic acid) (PLGA) as the scaffold material, the goal was to develop an implant that would support to the implant site, allow for cell ingrowth, and degrade away over time. Porous scaffolds were fabricated from PLGA microspheres using …

Induction Of Cell Death Mechanisms And Apoptosis By Nanosecond Pulsed Electric Fields (Nspefs), Stephen J. Beebe, Nova M. Sain, Wei Ren

Bioelectrics Publications

Pulse power technology using nanosecond pulsed electric fields (nsPEFs) offers a new stimulus to modulate cell functions or induce cell death for cancer cell ablation. New data and a literature review demonstrate fundamental and basic cellular mechanisms when nsPEFs interact with cellular targets. NsPEFs supra-electroporate cells creating large numbers of nanopores in all cell membranes. While nsPEFs have multiple cellular targets, these studies show that nsPEF-induced dissipation of DeltaPsim closely parallels deterioration in cell viability. Increases in intracellular Ca2+ alone were not sufficient for cell death; however, cell death depended of the presence of Ca2+. When both events occur, cell …

A Dna Computer For Glioblastoma Multiforme Diagnosis And Drug Delivery, Sumaiya F. Hashmi

CMC Senior Theses

Glioblastoma multiforme (GBM) is a debilitating malignant brain tumor with expected patient survival of less than a year and limited responsiveness to most treatments, often requiring biopsy for diagnosis and invasive surgery for treatment. We propose a DNA computer system, consisting of input, computation, and output components, for diagnosis and treatment. The input component will detect the presence of three GBM biomarkers: vascular endothelial growth factor (VEGF), caveolin-1α (CAV), and B2 receptors. The computation component will include indicator segments for each of these genes, and ensure that output is only released if all the biomarkers are present. The output component …

Recovering Local Neural Tract Directions And Reconstructing Neural Pathways In High Angular Resolution Diffusion Mri, Ning Cao

Theses and Dissertations--Computer Science

Magnetic resonance imaging (MRI) is an imaging technique to visualize internal structures of the body. Diffusion MRI is an MRI modality that measures overall diffusion effect of molecules in vivo and non-invasively. Diffusion tensor imaging (DTI) is an extended technique of diffusion MRI. The major application of DTI is to measure the location, orientation and anisotropy of fiber tracts in white matter. It enables non-invasive investigation of major neural pathways of human brain, namely tractography. As spatial resolution of MRI is limited, it is possible that there are multiple fiber bundles within the same voxel. However, diffusion tensor model is …

Investigation Of Nanoparticle Delivery To Cancer Cells By Conjugation With Various Targeting Moieties, Leila Hossein Rashidi

Bioengineering Theses - Archive

Recently, mapping and profiling of specific tumor biomarkers characterizing cancer cells, followed by understanding of signal cascades involved in the pathogenesis of tumors (targeted therapy), as well as diagnosis in early stages, have become promising topics in cancer research. Since, the most considerable limitations of conventional therapies and diagnostic modalities are associated with nonspecific targeting; designing intelligent new anti-cancer nanocarries improved by targeting biomolecules could enhance therapeutic efficiencies as well as diagnosis in early stage of cancer. Active targeting which is based on the surface accessibility and the high level of expression of specific cancer antigens has attracted much attention …

Effect Of Body Mass Index On The Biomechanical Properties Of Anterior Vaginal Wall Tissue Of Prolapsed Patients, Sandra Gabriela Ochoa Lopez

Bioengineering Theses - Archive

Anterior Vaginal Wall (AVW) prolapse is a bothersome condition that affects thousands of women. Its onset and progression is not well understood but is thought to be multifactorial. Biomechanical properties of AVW tissue from prolapsed patients have been measured in-vitro using excised tissue specimens with great variability found in results, possibly from differences in tissue preparation, setting, preservation time, temperature, hydration, etc. In-vivo test using a BTC-2000TM cutometer-like device has recently been developed that measures the tissue uplift under suction pressure load. In this study, a systematical analysis of biomechanical property measurements from AVW tissues was done, including both in-vitro …

Measurement Of Transverse Relaxation Times Of Cerebral Metabolites In Brain Tumors, Akshay Madan

Bioengineering Theses - Archive

Proton (¹H) magnetic resonance spectroscopy (MRS) provides a non-invasive means of assessing metabolite concentration for a range of biologically important cerebral compounds in vivo. To extract quantitative information, additional data regarding proton spin relaxation phenomena is critical. Transverse relaxation times (T₂) of cellular metabolites depend on the local molecular environment in which they reside. Several neurological diseases alter the molecular environment, which may be reflected in the changes of the T₂ relaxation times. Therefore alterations in T₂ in tumors may provide important information about the local environment and a potential non-invasive diagnostic tool. Thirty-seven adult patients with gliomas and 11 …

Microfluidic Chip-Based Fabrication Of Hollow Alginate Microfiber For Enzyme Entrapment And Reaction, Uyen Hoang Thao Pham

Bioengineering Theses - Archive

This thesis demonstrates a simple process to generate alginate hollow microfibers by using a non-lithographic PDMS microfluidic device. The microfluidic device was fabricated by a novel template method in a wet lab without the support of any conventional lithography techniques. The relationships of the flow rate and the diameter of hollow alginate fibers were characterized. It was found that the outer diameter of the alginate hollow fiber was independent of the flow rate, but the core flow and sheath flow played an important role to control the internal diameter and the wall thickness of the alginate hollow microfiber. At a …

Design, Fabrication And Evaluation Of A Novel Microfluidic Based In Vitro Cell Migration Assay, Sai Sirisha Dhavala

Bioengineering Theses - Archive

Microfabrication and microfluidic devices have been recognized as potential platforms for cell-based and drug screening studies. Human glioblastoma multiforme (hGBM) cells migrate inside the central nervous system (CNS) in narrow space constrictions and rarely metastasize through bloodstream. Hence, microfluidic devices consisting of narrow channels are considered as suitable models to study cell migration in vitro. Further the migratory capability of each individual cell could be easily obtained and quantified using such system. This effort presents the design and development of an alternative microfluidic system that provides an integrated array of channels for screening multiple drugs simultaneously. This system is an …