Biomedical Engineering and Bioengineering Commons^™

Application Of Response Surface Methodology And Central Composite Design For 5p12-Rantes Expression In The Pichia Pastoris System, Frank M. Fabian

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Pichia pastoris has demonstrated the ability to express high levels of recombinant heterologous proteins. Protein expression is enhanced during fermentation at high cell density. However, the level of expression is mainly regulated by fermentation operation factors. This research is directed to investigate the effect of methanol growth rate, temperature and pH in the expression of the total 5P12-Rantes concentration, expression of active 5P12-Rantes and Specific yield using the response surface methodology and central composite design.

The response surface methodology, RSM, has been used successfully used by Zhang, W. and Ian, M. to optimize the cell density and fermentation process. The …

Fabrication Of Cao-Nao-Sio2/Tio2 Scaffolds For Surgical Applications, A. W. Wren, A. Coughlan, K. E. Smale, S. T. Misture, B. P. Mahon, O. M. Clarkin, Mark R. Towler

Chemical and Biochemical Engineering Faculty Research & Creative Works

A series of titanium (Ti) based glasses were formulated (0.62 SiO₂-0.14 Na₂O-0.24 CaO, with 0.05 mol% TiO₂ substitutions for SiO₂) to develop glass/ceramic scaffolds for bone augmentation. Glasses were initially characterised using X-ray diffraction (XRD) and particle size analysis, where the starting materials were amorphous with 4.5 μm particles. Hot stage microscopy and high temperature XRD were used to determine the sintering temperature (̃700 °C) and any crystalline phases present in this region (Na₂Ca₃Si₆O₁₆, combeite and quartz). Hardness testing revealed that the Ti-free control (ScC- …

Measuring Impedance Of Tissues Using A Microfabricated Microelectrode Array, Ashwini Bhat

Master's Theses

MEASURING IMPEDANCE OF TISSUES USING A MICROFABRICATED MICROELECTRODE ARRAY By Ashwini Bhat

This thesis looks at the possibility of using impedance spectroscopy for differentiating tissue, using a microelectrode array (MEA). The thesis first discusses the background and the motivation for this thesis. It covers the certain basic concepts of the human skin starting from the top epidermis layer all the way to the deep dermis layers of the skin. Then it discusses different types of skin cancer and how they occur, in humans. It also discusses various microfabrication techniques such as oxidation, wet etching, sputtering and photolithography for the creation …

Characterization Of Polyacrylonitrile Carbon Fibers, Christian Burke Iversen

Biomedical and Chemical Engineering – Theses

Carbon fiber composites are a widely used, advanced material with exceedingly high strength to weight properties. In this thesis, a literature overview of carbon fiber manufacturing was provided, as well as a thorough analysis of in- house electrospun polyacrylonitrile fiber stabilization and surface modification of the resulting carbon fibers. In the first section, an overview of precursor fiber fabrication is provided, followed by an analysis of stabilization using surface and bulk composition, dimensional analysis, and functional group analysis via FTIR. The second section uses the current stabilization procedure to develop carbon nanofibers. Fibers first underwent a nitric acid oxidation time …

Handitrike - Recumbent Tricycle, Sean Higginson, Kevin Howie, Vinay Patel

Mechanical Engineering

This report covers the design and construction of the recumbent racing tricycle for Mr. Robert T. Kelly, a disabled veteran. Unfortunately Rob’s right leg is five inches shorter than his left one and therefore is unable to properly operate standard cranks. Our team HandiTrike is composed of Sean Higginson, Kevin Howie, and Vinay Patel and our project requires us to come up with a design that is feasible to complete within the given three quarters, as well as allow Rob to gain full use of his tricycle. Currently Rob ‘s trike uses the standard crank set up found on most …

A Watershed Scale Evaluation Of Selected Second Generation Biofeedstocks On Water Quality, Gurdeep Singh

Graduate Theses and Dissertations

This study compares a novel simulation approach to the conventional Soil and Water Assessment Tool (SWAT) modeler's approach for targeting biofuel crop production on marginal lands. In conventional SWAT modeling approach, non-spatial definition of hydrological response units (HRUs) results in the simulation of biofuel crops on both marginal and non-marginal land. This study provides an alternative approach in which a marginal-land raster was integrated into the land use and land cover (LULC) raster in such a way that the land uses were divided into marginal and non-marginal components. This modified LULC was used for model setup which resulted in marginal …

Md Mouse: Integrated Blood Pressure Device, Anand Shah, Jamila Mckenzie, Rex Weinstein, Noelle Nelson, Clayton Goertemiller

Intersections Fall 2020

Hypertension, or high blood pressure, is a public health concern due to both its pervasiveness and the significant risk of disability, stroke, or heart attack that can occur years after high blood pressure is detected. Furthermore, new pandemic statistics suggest that patients with hypertension experience greater health consequences of COVID-19, indicating that the condition is more circumstantially deadly. Occasional visits to a doctor's office, the most common method to measure blood pressure, only provide a snapshot of a person's blood pressure and are not an accurate characterization. This is because blood pressure can fluctuate based on daily changes to the …

System For Enhanced Removal Of Gastrointestinal Clots, Neha Boinpally, Megan Buford, Emma Hammelef, Sharmila Iyer, Keyvon Rashidi

Intersections Fall 2020

Gastrointestinal (GI) bleeding is a hazardous clinical condition often resulting in morbidities and mortality in patients. After diagnosis, treatment options include administering proton pump inhibitors (PPIs), embolic agents to aid in the breakdown of the clots. At the same time, hemostasis can also be achieved using targeted endoscopic techniques and hemostatic forceps. During the procedure, the blood clots and other fibrous material are removed from the GI tract via suction from the endoscope instrument. However, this process is not overly effective with regard to removing the clots from the GI tract since the clots often cause blockages in the suction …

Stress Measurement Wearable Device Optimized For Use In The Clinical Icu, Jacob Baraz, Max Jesurum, Mason Jiang, Cierra Spriggs, Ryan Tatton

Intersections Fall 2020

The current benchmark for measuring stress in the intensive care unit (ICU) is the perceived stress questionnaire (PSQ). Validated by a large population of in-patients, the PSQ is a self-reported questionnaire used in clinical and laboratory settings for assessing stressful circumstances that typically exacerbate disease symptoms. However, clinicians and nurses operating in the ICU could benefit from a more efficient system for measuring the stress of admitted patients. Monitoring physiological markers for the degree of stress can aid clinicians in providing accurate and effective treatment methods to benefit the health condition and alleviate the stress of the patient. The proposed …

Port Injection Site Sanitization (Pss) Dispenser Design, Ya Gao, Lindsey Greenwood, Rachel Mann, Katherine He

Intersections Fall 2020

Peripheral venous catheters (PVCs) are the most used device in hospitals, used for intravenous medication and for drawing blood. It is estimated that over 150 million catheters are inserted into patients each year in the US. About 250,000 patients with PVCs get catheter-related bloodstream infections (CRBIs) which are estimated to have a $2.8 billion additional cost nationwide and a 12%-15% mortality rate. It is also estimated that a 1.6% decrease in the incidence of CRBIs would yield a cost savings of $113 per inserted catheter. These statistics denote a clinical need for a reduction of infections caused by PVCs, saving …

Novel Wearable System To Monitor, Predict, And Acutely Treat Epileptic Seizures, Jackie Kresic, Katherine Glaess, Sunayana Jampanaboyana, Cathy Tao

Intersections Fall 2020

Epilepsy, a chronic condition involving recurrent and unprovoked seizures, affects over 50 million individuals globally. Characterized by abnormalbrain activity, these seizures affect the daily functioning of individuals, and increase the risk of further physical, mental, and emotional harm.Traditional treatment options such as invasive brain surgery and anti-epileptic drugs (AEDs) do not fully prevent the occurrence of epileptic seizures,can remain ineffective for certain individuals, and can lead to severe adverse effects. To reduce the incidence of serious lifestyle complications, weare proposing a novel design for a daily-use wearable that involves biopotential monitoring, seizure prediction, and an automated acute interventionstrategy to reduce …

Morphometric, Biochemical, And Raman Spctral Analyses Of Muscle Damage In Patients With Peripheral Arterial Disease: Provising Objective Criteria For Diagnosis And Treatment Monitoring, Kim Cluff

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Peripheral arterial disease (PAD), which affects approximately 10 million Americans, is characterized by atherosclerosis of the non-coronary arteries. PAD produces a progressive accumulation of ischemic injury to the limbs that is reflected in a gradual worsening in the myofiber morphology and oxidative damage in the gastrocnemius muscle. In this study, we evaluated the hypothesis that quantitative morphological and biochemical parameters of gastrocnemius myofibers change in a consistent manner during the progression of PAD, provide an objective grading of muscle degeneration in the ischemic limb, and correlate to clinical stage of PAD. Myofiber morphometrics were determined precisely with mathematical equations that …

Design Of A Pretreatment And Enzymatic Saccharification Scheme Of Understory From Managed Pine Forest For A Biochemical-Refinery Platform: The Example Of The Sweetgum Tree, Angele Djioleu

Graduate Theses and Dissertations

The possibility of using sweetgum from southern pine dominated forests as a biobased refinery feedstock was investigated. First, a baseline hydrolysis scheme for sweetgum wood and bark was designed. Sweetgum wood and bark were pretreated with 0.98% (v/v) sulfuric acid at 140°C for 30, 40, 50, 60 or 70 min and at 160°C for 30, 40, 50 or 60 min. The water insoluble solid (WIS) fraction was hydrolyzed with a cellulase enzyme cocktail. Results showed that maximum xylose and glucose yields from the wood were 82 and 86%, respectively. Similarly, the respective maximum yields of xylose and glucose from the …

Altered Hemodynamics, Endothelial Function, And Protein Expression Occur With Aortic Coarctation And Persist After Repair, Arjun Menon, Thomas J. Eddinger, Hongfeng Wang, David C. Wendell, Jeffrey M. Toth, John F. Ladisa

Biomedical Engineering Faculty Research and Publications

Coarctation of the aorta (CoA) is associated with substantial morbidity despite treatment. Mechanically induced structural and functional vascular changes are implicated; however, their relationship with smooth muscle (SM) phenotypic expression is not fully understood. Using a clinically representative rabbit model of CoA and correction, we quantified mechanical alterations from a 20-mmHg blood pressure (BP) gradient in the thoracic aorta and related the expression of key SM contractile and focal adhesion proteins with remodeling, relaxation, and stiffness. Systolic and mean BP were elevated for CoA rabbits compared with controls leading to remodeling, stiffening, an altered force response, and endothelial dysfunction both …

On The Importance Of Modeling Stent Procedure For Predicting Arterial Mechanics, Shijia Zhao, Linxia Gu, Stacey R. Froemming

Department of Mechanical and Materials Engineering: Faculty Publications

The stent-artery interactions have been increasingly studied using the finite element method for better understanding of the biomechanical environment changes on the artery and its implications. However, the deployment of balloon-expandable stents was generally simplified without considering the balloon-stent interactions, the initial crimping process of the stent, its overexpansion routinely used in the clinical practice, or its recoil process. In this work, the stenting procedure was mimicked by incorporating all the above-mentioned simplifications. The impact of various simplifications on the stent-induced arterial stresses was systematically investigated. The plastic strain history of stent and its resulted geometrical variations, as well as …

The Effects Of Low Dose Ionizing Radiation Exposure On The Metabolic And Mechanical Properties Of Articular Cartilage, Carl Lindburg

All Theses

Radiation therapy is necessary treatment for many cancer patients due to its non-surgical, yet aggressive and efficacious properties. In fact, over 50% of patients with cancer will undergo some form of radiotherapy during the course of their treatment. While the biological response to ionizing radiation has been examined over the years and many adverse effects have been identified, the effects of radiation on mature cartilage and musculoskeletal tissues are not well understood. Bone, once thought to be a tissue relatively resistant to radiation, has recently been shown to have osteoporosis-like bone atrophy after exposure to low doses (2 Gy) of …

Bioswellable Amphiphilic Copolymers, David Ingram

All Theses

The suture is one of the most commonly used medical devices, consisting of a fiber, a surgical needle and the packaging in which it is stored. The fiber itself remains after implantation for a defined time and is responsible for the approximation of the wound during the healing process. The needle merely serves to aid in insertion, and preferably has a diameter larger than the diameter of the fiber .
The 1970's marked the birth of a new family of fibrous materials for the approximation of wounds: synthetic absorbable sutures. This family has the ability to provide wound support during …

Develop Novel Frap Techniques For Determining Anisotropic Solute Diffusion In Cartilaginous Tissues, Changcheng Shi

All Dissertations

Cartilaginous tissue is a connective tissue composed of specialized cells (e.g., chondrocytes and fibroblasts) that produce a large amount of extracellular matrix (ECM), which is comprised mostly of collagen fibers, abundant ground substance rich in proteoglycan, and elastic fibers. It is characterized by its avascular structures within the tissue, implying that nutrition for normal tissue cells, for maintaining a healthy ECM, is mainly supplied through diffusion from nearby vascularized tissues and synovial fluid. Poor nutritional supply to the cartilaginous tissue is believed to be an important factor leading to tissue degeneration. Moreover, due to the complex collagen fiber structures, the …

Induced Elastic Matrix Synthesis Within 3-Dimensional Collagen Constructs, Lavanya Venkataraman

All Dissertations

Elastin, a primary component of elastic arteries, maintains structural stability of the cyclically recoiling artery, and critically regulates vascular cell behavior. Accelerated degradation of elastic matrix, such as that seen in vascular pathologies like abdominal aortic aneurysms (AAA), can therefore severely compromise vessel homeostasis. Tissue engineering and in-situ matrix repair strategies evaluated so far are primarily limited in inducing adult vascular cells to replicate the complex elastic matrix assembly process, and restore lost matrix integrity. Previously, our lab established the elastogenic benefits of concurrent delivery of TGF-β1 and HA-oligomers (together termed elastogenic factors, EFs), within 2D cultures of rat aortic …

Functional Classification Of Skeletal Muscle Networks. I. Normal Physiology, Yu Wang, John Winters, Shankar Subramaniam

Biomedical Engineering Faculty Research and Publications

Extensive measurements of the parts list of human skeletal muscle through transcriptomics and other phenotypic assays offer the opportunity to reconstruct detailed functional models. Through integration of vast amounts of data present in databases and extant knowledge of muscle function combined with robust analyses that include a clustering approach, we present both a protein parts list and network models for skeletal muscle function. The model comprises the four key functional family networks that coexist within a functional space; namely, excitation-activation family (forward pathways that transmit a motoneuronal command signal into the spatial volume of the cell and then use Ca …