Analytical Chemistry Commons^™

Leveraging The Structure Of Dnaja1 To Discover Novel Potential Pancreatic Cancer Therapies, Heidi E. Roth, Aline De Lima Leite, Nicolas Y. Palermo, Robert Powers

Chemistry Department: Faculty Publications

Pancreatic cancer remains one of the deadliest forms of cancer with a 5-year survival rate of only 11%. Difficult diagnosis and limited treatment options are the major causes of the poor outcome for pancreatic cancer. The human protein DNAJA1 has been proposed as a potential therapeutic target for pancreatic cancer, but its cellular and biological functions remain unclear. Previous studies have suggested that DNAJA10s cellular activity may be dependent upon its protein binding partners. To further investigate this assertion, the first 107 amino acid structures of DNAJA1 were solved by NMR, which includes the classical J-domain and its associated linker …

Natural Product Discovery And Mycotoxin Analysis Of Agricultural Endophytes And Pathogens, Jacob P. Walsh

Electronic Thesis and Dissertation Repository

This thesis focuses on the application of fungal natural product chemistry for the use of agriculture fungal pathogenesis research. The research in this work uses many analytical chemistry techniques and instruments such as HPLC, LC-MS/MS and NMR. In Chapter 2, a diagnostic fragmentation module was developed for the identification of compound classes in crude fungal extracts. This module identified the classes cytochalasins and chaetoglobosins from extracts of Penicillium, Chaetomium, and Xylaria. From these extracts a new chaetoglobosin was discovered and the module was implemented into the open-source software package MZmine 2.0. Chapter 3 discusses analytical chemistry techniques with the …

Material Analysis And Conservation Treatment Of Louise Nevelson’S Sculpture Dawn’S Image, Night, Kaela Nurmi

Art Conservation Master's Projects

Louise Nevelson’s large-scale, matte black assemblage sculpture Dawn’s Image, Night, 1969, is owned by and currently on display at SUNY Buffalo State College. The paint layers exhibited significant amounts of dust, some damages, vandalism, and unsightly fingerprints. Extensive scientific analysis and archival research were utilized to design an appropriate treatment and long-term preservation plan. Methods of analysis include: Fourier transform infrared spectroscopy, pyrolysis-gas chromatography-mass spectrometry, microchemical testing, and xray fluorescence spectroscopy. The project also addresses the ethical considerations surrounding the prior removal of original components for safety considerations, repainting as a possible treatment, and the overall obstacles of treating a …

Sensitized Photooxidation Of Prenylated Compounds: Mechanisms Of Downstream Dark Effects And Phototoxicity Priming, Shakeela Jabeen

Dissertations, Theses, and Capstone Projects

This thesis consists of four chapters as detailed below.

Chapter 1 discusses a singlet oxygen priming mechanism. Airborne singlet oxygen derived from photosensitization of triplet dioxygen is shown to react with an alkene surfactant (8-methylnon-7-ene-1 sulfonate) leading to ‘ene’ hydroperoxides that in the dark inactivate planktonic E. coli. The ‘ene’ hydroperoxide photoproducts are not toxic on their own, but they become toxic after the bacteria are pretreated with singlet oxygen. The total quenching rate constant (k_T) of singlet oxygen of the alkene surfactant was measured to be 1.1 × 10⁶ M⁻¹ s^{− …}

Ai Protein Structure Prediction-Based Modeling And Mutagenesis Of A Protostome Receptor And Peptide Ligands Reveal Key Residues For Their Interaction, Shi-Qi Guo, Ya-Dong Li, Ping Chen, Guo Zhang, Hui-Ying Wang, Hui-Min Jiang, Wei-Jia Liu, Ju-Ping Xu, Xue-Ying Ding, Ping Fu, Ke Yu, Hai-Bo Zhou, James W. Checco, Jian Jing

Chemistry Department: Faculty Publications

The protostome leucokinin (LK) signaling system, including LK peptides and their G protein-coupled receptors, has been characterized in several species. Despite the progress, molecular mechanisms governing LK peptide–receptor interactions remain to be elucidated. Previously, we identified a precursor protein for Aplysia leucokinin-like peptides (ALKs) that contains the greatest number of amidated peptides among LK precursors in all species identified so far. Here, we identified the first ALK receptor from Aplysia, ALKR. We used cell-based IP1 activation assays to demonstrate that two ALK peptides with the most copies, ALK1 and ALK2, activated ALKR with high potencies. Other endogenous ALK-derived peptides …

A Novel Electrochemical Sensor Based On Au/Rgo/Feooh For One-Step Detection Of Nitrite, Da-Juan Luo, Bing-Qian Liu, Meng-Yan Qin, Rong Gao, Li-Xia Su, Yong-Huan Su

Journal of Electrochemistry

Nitrite, a widespread raw material, is harmful to human health for long-term consumption. At present, the detection methods of nitrite mainly include chemical analysis, fluorescence, ultraviolet spectrophotometry and chromatography. These methods have ideal sensitivity and selectivity, but also have some characteristics: cumbersome operation, expensive equipment and professional personnel. Therefore, the development of a simple and sensitive nitrite assay is of great significance. In this paper, the Au/rGO/FeOOH composite materials, which revealed good synergistic catalytic performance among the three elements in the composite, were prepared by simple hydrothermal method and reduction method for the first time with large specific surface area …

Analyzing Enhanced Electrochemiluminescence Of Novel Materials, Liuqing Yang

Electronic Thesis and Dissertation Repository

As a powerful analytical technique, electrochemiluminescence (ECL) has found wide applications in the fields of bioanalysis and light-emitting devices. However, many ECL materials sustain the shortcomings of low ECL efficiencies. To better design novel materials with ECL enhancement, it is essential to investigate and the enhanced ECL mechanisms. In this thesis, ECL enhancements of various novel materials were analyzed utilizing ECL-voltage curves, potential pulsing experiments, ECL and photoluminescence spectroscopies, and other characterization methods. Specifically, two graphene quantum dots (GQDs) with different heteroatom doping were designed and synthesized. Structural characterizations and spectroscopies demonstrated that the heteroatom doping could change the surface …

Meta-Analysis Reveals Both The Promises And The Challenges Of Clinical Metabolomics, Heidi E. Roth, Robert Powers

Chemistry Department: Faculty Publications

Clinical metabolomics is a rapidly expanding field focused on identifying molecular biomarkers to aid in the efficient diagnosis and treatment of human diseases. Variations in study design, metabolomics methodologies, and investigator protocols raise serious concerns about the accuracy and reproducibility of these potential biomarkers. The explosive growth of the field has led to the recent availability of numerous replicate clinical studies, which permits an evaluation of the consistency of biomarkers identified across multiple metabolomics projects. Pancreatic ductal adenocarcinoma (PDAC) is the third-leading cause of cancer-related death and has the lowest five-year survival rate primarily due to the lack of an …

Contact Angle & Electrochemical Measurements Of Metallic Atmospheric Corrosion On Copper And Carbon Steel, Jacob J.M. Bunting, Jiju M. Joseph, Heng-Yong Nie, Samantha M. Gateman

Undergraduate Student Research Internships Conference

Understanding atmospheric corrosion has been incredibly challenging due to the complex interplay between surface microstructures, environmental variables, and electrochemical processes. The methodology presented is being developed to apply to atmospheric corrosion models of metals and other advanced materials by observing the change in contact angle in situ as a function of corrosion parameters. Performed contact angle measurements on two industrially relevant metals (copper and carbon steel) over a 1 min to 30-day time span to track the change in wettability due to the formation of an air-formed oxide layer (aged) as a function of surface roughness.

Simple And Fast Fabrication Methodology For Platinum And Carbon Ultramicroelectrodes (Ume) In Scanning Electrochemical Microscopy (Secm), Emma Mae Lord, Jiju Joseph, Samantha M. Gateman, Zhifeng Ding

Undergraduate Student Research Internships Conference

Scanning electrochemical microscopy (SECM) is a highly versatile method for measuring and imaging a wide range of systems. When paired with an intricately made ultramicroelectrode (UME) probe, SECM becomes an even more powerful tool for imaging microscale features in a system. However, purchasing these UME’s comes at a high cost with less ability for modification. Having high quality UME’s expands the ability of SECM and enables precise measuring and imaging in a wide range of applications such as solar cells in Dr. Ding’s lab, and corroding metals in Dr. Gateman’s lab. To combat this issue of high cost and set …

Development And Characterization Of A Peanut-Shell Based Activated Carbon And The Outcomes Of A Hands-On Approach To Chemical Education, Danielle Pitre

Theses and Dissertations

Heavy metals are a recognized toxic environmental contaminant, even at very low concentrations. There have been well-known events in the last decade within the US of high amounts of lead in the drinking water supplies of cities, leading to detrimental effects within its population. Ways have been found to remove this metal, and others, from water with expensive adsorbents. The aim of the first part of this research was to create an inexpensive adsorbent from a waste material and modify it in such a way that it would be adept at removing heavy metals from water.

In Chapter I, we …

Editorial: Expansion Of The Genetic Code: Unnatural Amino Acids And Their Applications, Subhendu Sekhar Bag, Ishu Saraogi, Jiantao Guo

Chemistry Department: Faculty Publications

No abstract provided.

Intersections Of Environmentalism, Chemistry, And Racism: An Experimental Study Of Halobenzene Hydrogenolysis And Critical Communication Studies Of Equitable Learning Practices Rooted In Black Feminism, Lauren O. Babb

Electronic Theses and Dissertations

Increasing concentrations of fluorinated aromatic compounds in surface water, groundwater, and soil pose threats to the environment. Fundamental studies that elucidate mechanisms of dehalogenation for C-X compounds (where X represents a halide) are required to develop effective remediation strategies. For halogenated benzenes, previously published research has suggested that the strength of the C-X bond is not rate-determining in the overall rate of dehalogenation. Instead, the rate-determining step has been hypothesized to be adsorption of the C-X compound onto the surface of a catalyst. Building on this hypothesis, in this work, we examine the reaction kinetics of fluorobenzene conversion to benzene, …

Elucidating Molecular Structure And Interactions Of Disease-Related Noncovalent Assemblies Through Ion Mobility Spectrometry - Mass Spectrometry, Amber Leann Hope Gray

Doctoral Dissertations

Ion mobility spectrometry – mass spectrometry (IMS-MS) is a powerful gas-phase technique that is routinely employed in the investigations of amyloid oligomers and conformational studies due to its ability to separate isobaric and isomeric species with the same mass-to-charge ratio (m/z). The goal of this dissertation is to use IMS-MS as a primary platform to probe the conformational landscape of a macrocyclic protein, Cyclosporin A (CycA), and to characterize interactions of amyloidogenic assemblies. Through five independent studies presented within document, the limits of IMS-MS are pushed by employing conditions which mimic biological environments.

Chapter 2 focused on how …

Dissolution And Electrochemical Recovery Of Uo2, Uo3, And U3o8 In Ionic Liquids, Katherine Iolani Thornock Luebke

UNLV Theses, Dissertations, Professional Papers, and Capstones

This research explores a novel method of increasing the solubility of uranium oxides and other actinide oxides in room temperature ionic liquids (IL) using direct dissolution. The goal is to further expand our knowledge of actinide dissolution and possible nuclear fuel cycle material applications using ionic liquids. The novelty of the methods is focused on the use of oxidizing gas generated using air passed through an ozone generator. While examples of dissolution exist in IL using acidic functionalized ionic liquids, the solubility of all possible oxide species was not demonstrated. Also, the addition of aqueous acid to IL containing actinide …

Isolation And Characterization Of Extracellular Vesicles From Various Biological Matrices Using Capillary-Channeled Polymer (C-Cp) Fiber Solid-Phase Extraction Spin-Down Tips, Kaylan Jackson

All Dissertations

A number of recent works have emphasized the need to isolate nanometer-scale analytes, like extracellular vesicles (EVs), from various biologically-relevant fluids. Exosomes are a subset of small EVs that range from 30-200 nm in diameter that serve as biomolecular snapshots of their cell of origin containing mother cell-specific DNA, miRNA, mRNA, and proteins. As critical components of intercellular communication, exosomes and other EVs play significant roles in many physiological and pathological processes. Diverse populations of these vesicles can be collected from biofluids, including blood, saliva, and urine, from cell culture conditioned media and primary cells, and even from plant …

Development Of Plasmonic And X-Ray Luminescence Nanoparticles For Bioimaging And Sensing Applications, Meenakshi Ranasinghe

All Dissertations

This dissertation discusses the development of plasmonic and X-ray luminescence nanoparticles (~100 nm) to use in bioimaging and sensing applications. The nanoparticles have interesting optical properties compared to their atomic levels and bulk materials. The optical properties of nanomaterials can be controlled by changing size, shape, crystal structure, etc. Also, they have a large surface area that can be functionalized with biomolecules. Therefore, the optical properties and biofunctionalized nanomaterials are useful in biomedical applications such as targeted drug delivery, bioimaging, and sensing. The overall theme is to use nanoparticles with interesting optical properties compared to their atomic levels and bulk …

Variations In Copper Form Exposure Differentially Modulate Zea Mays (Corn) Physiological Responses, Carolina Valdes Bracamontes

Open Access Theses & Dissertations

In the present study, Zea mays seedlings grown under nano Cu(OH)2 (nCu), bulk Cu(OH)2 (bCu), and ionic CuSO4 (iCu) compound exposure were harvested after six days. The nutritional profile was determined to be significantly disrupted in the roots by 1000 ppm bCu treatment, resulting in a 58.7% reduction in potassium compared to the control. In the shoots, a significant decrease of manganese was observed for 10 and 1000 ppm iCu treatments with 55.7% and 64.2% reductions, respectively. The overall protein content and catalase (CAT) enzymatic activity, however, remained unaffected in either roots or shoots, while an absence of polyphenol oxidase …

Exposure Of Candyland Red Tomatoes (¬Solanum Lycopersicum L.) To Various Metal Oxide Nanomaterials: Full Life Cycle And Assessment Of Fruit Quality, Jesus Manuel Cantu

Open Access Theses & Dissertations

The use of nanotechnology in agriculture has attained high interest to enhance crop production due to their unique properties. Moreover, metal oxide nanomaterials can potentially supplement nutrients, enhance plant growth, and crop production. When investigating fruits' nutritional quality, carbohydrates and phytonutrients (bioactive compounds) play important roles. Therefore, it is important to understand how nanomaterials will affect the quality of tomato fruits. In this dissertation, various metal oxides were synthesized and applied to Candyland Red tomato seedlings to assess the plant growth and tomato production. In the first investigation, Candyland Red tomatoes (Solanum lycopersicum) were exposed to synthesized pristine CuO and …

Identification And Quantitation Of Unspecified Impurities Discovered In Novel Oral Irinotecan By Lc-Ms/Ms And Uhplc, Laura B. Miller

Forensic Science Master's Projects

Irinotecan is a cancer medication approved for medical use in the United States in 1996. It is currently administered via intravenous injection. However, intravenous dosing has disadvantages such as requirement of administration by a trained professional in a medical facility, possible severe adverse effects, pain at the injection site, and possible hemolysis if injected too rapidly. Previously oral administration was not feasible because the p-glycoprotein (p-GP) on the cell membrane of stomach cells acts as a defense mechanism against harmful substances by pumping the irinotecan back into the intestinal lumen for excretion. With the discovery of the p-GP inhibitor encequidar …