Statistics and Probability Commons^™

Developments In Nonparametric Regression Methods With Application To Raman Spectroscopy Analysis, Jing Guo

Theses and Dissertations--Epidemiology and Biostatistics

Raman spectroscopy has been successfully employed in the classification of breast pathologies involving basis spectra for chemical constituents of breast tissue and resulted in high sensitivity (94%) and specificity (96%) (Haka et al, 2005). Motivated by recent developments in nonparametric regression, in this work, we adapt stacking, boosting, and dynamic ensemble learning into a nonparametric regression framework with application to Raman spectroscopy analysis for breast cancer diagnosis. In Chapter 2, we apply compound estimation (Charnigo and Srinivasan, 2011) in Raman spectra analysis to classify normal, benign, and malignant breast tissue. We explore both the spectra profiles and their derivatives to …

Nonlinear Hierarchical Models For Longitudinal Experimental Infection Studies, Michael David Singleton

Theses and Dissertations--Epidemiology and Biostatistics

Experimental infection (EI) studies, involving the intentional inoculation of animal or human subjects with an infectious agent under controlled conditions, have a long history in infectious disease research. Longitudinal infection response data often arise in EI studies designed to demonstrate vaccine efficacy, explore disease etiology, pathogenesis and transmission, or understand the host immune response to infection. Viral loads, antibody titers, symptom scores and body temperature are a few of the outcome variables commonly studied. Longitudinal EI data are inherently nonlinear, often with single-peaked response trajectories with a common pre- and post-infection baseline. Such data are frequently analyzed with statistical methods …

Sobriety In Delta Not Sober, Joe Mashburn

Mathematics Faculty Publications

We will show that the space delta not sober defined by Coecke and Martin is sober in the Scott topology, but not in the weakly way below topology.

Robust Estimates For Hp-Adaptive Approximations Of Non-Self-Adjoint Eigenvalue Problems, Stefano Giani, Luka Grubišić, Agnieszka Międlar, Jeffrey S. Ovall

Mathematics and Statistics Faculty Publications and Presentations

We present new residual estimates based on Kato’s square root theorem for spectral approximations of non-self-adjoint differential operators of convection–diffusion–reaction type. These estimates are incorporated as part of an hp-adaptive finite element algorithm for practical spectral computations, where it is shown that the resulting a posteriori error estimates are reliable. Provided experiments demonstrate the efficiency and reliability of our approach.

Investigating Use Of Beta Coefficients For Stock Predictions, Jeffrey Swensen

Williams Honors College, Honors Research Projects

By using previous stock market data, investors can get a good sense of how to invest for the future. A common way to determine what stocks are riskier than others is by using the beta coefficient. This paper investigates the relationship between the overall S&P 500 market and certain individual stocks to see if we can use past stock return data to predict the future riskiness of certain stocks. Correlation between the individual stocks and the S&P 500 will allow us to determine the relationship between the two. Finding the beta coefficients for the individual stock market will allow investors …

Estimation And Identification Of Change Points In Panel Models With Nonstationary Or Stationary Regressors And Error Term, Badi H. Baltagi, Chihwa Kao, Long Liu

Center for Policy Research

This paper studies the estimation of change point in panel models. We extend Bai (2010) and Feng, Kao and Lazarová (2009) to the case of stationary or nonstationary regressors and error term, and whether the change point is present or not. We prove consistency and derive the asymptotic distributions of the Ordinary Least Squares (OLS) and First Difference (FD) estimators. We find that the FD estimator is robust for all cases considered.

Unavoidable Minors Of Large 4-Connected Bicircular Matroids, Deborah Chun, Tyler Moss, Dan Slilaty, Xiangqian Zhou

Mathematics and Statistics Faculty Publications

It is known that any 3-connected matroid that is large enough is certain to contain a minor of a given size belonging to one of a few special classes of matroids. This paper proves a similar unavoidable minor result for large 4-connected bicircular matroids. The main result follows from establishing the list of unavoidable minors of large 4-biconnected graphs, which are the graphs representing the 4-connected bicircular matroids. This paper also gives similar results for internally 4-connected and vertically 4-connected bicircular matroids.

Using Time Series Models For Defect Prediction In Software Release Planning, James W. Tunnell

All Master's Theses

To produce a high-quality software release, sufficient time should be allowed for testing and fixing defects. Otherwise, there is a risk of slip in the development schedule and/or software quality. A time series model is used to predict the number of bugs created during development. The model depends on the previous numbers of bugs created. The model also depends, in an exogenous manner, on the previous numbers of new features resolved and improvements resolved. This model structure would allow hypothetical release plans to be compared by assessing their predicted impact on testing and defect- fixing time. The VARX time series …

Statistics In The Billera-Holmes-Vogtmann Treespace, Grady S. Weyenberg

Theses and Dissertations--Statistics

This dissertation is an effort to adapt two classical non-parametric statistical techniques, kernel density estimation (KDE) and principal components analysis (PCA), to the Billera-Holmes-Vogtmann (BHV) metric space for phylogenetic trees. This adaption gives a more general framework for developing and testing various hypotheses about apparent differences or similarities between sets of phylogenetic trees than currently exists.

For example, while the majority of gene histories found in a clade of organisms are expected to be generated by a common evolutionary process, numerous other coexisting processes (e.g. horizontal gene transfers, gene duplication and subsequent neofunctionalization) will cause some genes to exhibit a …

Characterizations Of Gamma Distribution Via Sub-Independent Random Variables, Gholamhossein Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

The concept of sub-independence is based on the convolution of the distributions of the random variables. It is much weaker than that of independence, but is shown to be sufficient to yield the conclusions of important theorems and results in probability and statistics. It also provides a measure of dissociation between two random variables which is much stronger than uncorrelatedness. Inspired by the excellent work of Jin and Lee (2014), we present certain characterizations of gamma distribution based on the concept of sub-independence.

Kumaraswamy-Half-Cauchy Distribution: Characterizations And Related Results, Gholamhossein Hamedani, I. Ghosh

Mathematics, Statistics and Computer Science Faculty Research and Publications

We present various characterizations of a recently introduced distribution (Ghosh 2014), called Kumaraswamy- Half- Cauchy distribution based on: (i) a simple relation between two truncated moments; (ii) truncated moment of certain function of the 1^st order statistic; (iii) truncated moment of certain function of the random variable; (iv) hazard function; (v) distribution of the 1^st order statistic; (vi) via record values. We also provide some remarks on bivariate Gumbel copula distribution whose marginal distributions are Kumaraswamy- Half-Cauchy distributions.

Statistical Learning With Artificial Neural Network Applied To Health And Environmental Data, Taysseer Sharaf

USF Tampa Graduate Theses and Dissertations

The current study illustrates the utilization of artificial neural network in statistical methodology. More specifically in survival analysis and time series analysis, where both holds an important and wide use in many applications in our real life. We start our discussion by utilizing artificial neural network in survival analysis. In literature there exist two important methodology of utilizing artificial neural network in survival analysis based on discrete survival time method. We illustrate the idea of discrete survival time method and show how one can estimate the discrete model using artificial neural network. We present a comparison between the two methodology …

Gene Expression Changes Reflect Clinical Response In A Placebo-Controlled Randomized Trial Of Abatacept In Patients With Diffuse Cutaneous Systemic Sclerosis, Eliza F. Chakravarty, Viktor Martyanov, David Fiorentino, Tammara A. Wood, David J. Haddon, Justin A. Jarrell, Paul Utz, Mark Genovese, Michael Whitfield, Lorinda Chung

Dartmouth Scholarship

Systemic sclerosis is an autoimmune disease characterized by inflammation and fibrosis of the skin and internal organs. We sought to assess the clinical and molecular effects associated with response to intravenous abatacept in patients with diffuse cutaneous systemic.

Evaluation Of The Signature Molecular Descriptor With Blosum62 And An All-Atom Description For Use In Sequence Alignment Of Proteins, Lindsay M. Aichinger

Williams Honors College, Honors Research Projects

This Honors Project focused on a few aspects of this topic. The second is comparing the molecular signature kernels to three of the BLOSUM matrices (30, 62, and 90) to test the accuracy of the mathematical model. The kernel matrix was manipulated in order to improve the relationship by focusing on side groups and also by changing how the structure was represented in the matrix by increasing the initial height distance from the central atom (Height 1 and Height 2 included).

There were multiple design constraints for this project. The first was the comparison with the BLOSUM matrices (30, 62, …

Investigation Of Robust Optimization And Evidence Theory With Stochastic Expansions For Aerospace Applications Under Mixed Uncertainty, Harsheel R. Shah

Doctoral Dissertations

One of the primary objectives of this research is to develop a method to model and propagate mixed (aleatory and epistemic) uncertainty in aerospace simulations using DSTE. In order to avoid excessive computational cost associated with large scale applications and the evaluation of Dempster Shafer structures, stochastic expansions are implemented for efficient UQ. The mixed UQ with DSTE approach was demonstrated on an analytical example and high fidelity computational fluid dynamics (CFD) study of transonic flow over a RAE 2822 airfoil.

Another objective is to devise a DSTE based performance assessment framework through the use of quantification of margins and …

The Subject Librarian Newsletter, Statistics, Fall 2015, Patti Mccall

Libraries' Newsletters

No abstract provided.

Ranking Interesting Changes In Correlation Coefficient Matrix Results From Varying Data Partitions In Causal Graphic Modeling, Yesica Daniela Bravo Gonzalez

Master's Theses

Problem

In life we need to compare situations in order to select the best solution. The study in this paper is about analyzing data (variables), which is also called data mining. There are situations where it is not enough to compare variables among themselves at one specific moment. Sometimes it is necessary to compare the behavior of variables at different periods of time and know how they behave at different times in order to select the best arrangements for any situation.

Method

To find correlation among variables, traffic intersections were simulated so they could be compared, since the correlation coefficient …

Bayesian Semi- And Non-Parametric Analysis For Spatially Correlated Survival Data, Haiming Zhou

Theses and Dissertations

Flexible incorporation of both geographical patterning and risk effects in cancer survival models is becoming increasingly important, due in part to the recent availability of large cancer registries. The analysis of spatial survival data is challenged by the presence of spatial dependence and censoring for survival times. Accurately modeling the risk factors and geographical pattern that explain the differences in survival is particularly of interest. Within this dissertation, the first chapter reviews commonlyused baseline priors, semiparametric and nonparametric Bayesian survival models and recent approaches for accommodating spatial dependence, both conditional and marginal. The last three chapters contribute three flexible survival …

High-Throughput Data Analysis: Application To Micronuclei Frequency And T-Cell Receptor Sequencing, Mateusz Makowski

Theses and Dissertations

The advent of high-throughput sequencing has brought about the creation of an unprecedented amount of research data. Analytical methodology has not been able to keep pace with the plethora of data being produced. Two assays, ImmunoSEQ and the cytokinesisblock micronucleus (CBMN), that both produce count data and have few methods available to analyze them are considered.

ImmunoSEQ is a sequencing assay that measures the beta T-cell receptor (TCR) repertoire. The ImmunoSEQ assay was used to describe the TCR repertoires of patients that have undergone hematopoietic stem cell transplantation (HSCT). Several different methods for spectratype analysis were extended to the TCR …

Considerations For Screening Designs And Follow-Up Experimentation, Robert D. Leonard

Theses and Dissertations

The success of screening experiments hinges on the effect sparsity assumption, which states that only a few of the factorial effects of interest actually have an impact on the system being investigated. The development of a screening methodology to harness this assumption requires careful consideration of the strengths and weaknesses of a proposed experimental design in addition to the ability of an analysis procedure to properly detect the major influences on the response. However, for the most part, screening designs and their complementing analysis procedures have been proposed separately in the literature without clear consideration of their ability to perform …