Atomic, Molecular and Optical Physics Commons^™

Fish-Spec: Fast Identification System For Handheld Spectroscopy And Species Classification, Mitchell Sueker, Nicholas Mackinnon, Gregory Bearman, Amanda Tabb, Diane Kim, Rosalee S. Hellberg, Alireza Akhbardeh, Hamid Reza Marateb, Jianwei Qin, Moon Kim, Fartash Vasefi, Hossein Kashani Zadeh

Food Science Faculty Articles and Research

Accurate fish species identification is critical to prevent mislabeling and fraud in the seafood industry. We present a handheld multi-mode point spectroscopy system that combines fluorescence (365 and 395 nm excitation) and reflectance measurements in the visible to near-infrared (∼350–900 nm) and short-wave infrared (∼900–1700 nm) regions for rapid, non-destructive classification of fish fillets. Tissue spectra were acquired at 25 positions on 68 fillets from 11 species, in both frozen and thawed states. Feature-level fusion across all four modes enabled higher classification accuracy than any single mode alone. A global machine-learning model classified all species with 85 ± 2.8 %, …

Parameterizing Ion–Lipid Interactions From Local Clusters To Reproduce Experimental Bulk Properties Of Lipid Bilayers, W. Matthew Saunders

USF Tampa Graduate Theses and Dissertations

Phospholipids are the main component of cell membranes, providing a delimiting boundary for cells from their environments or from their organelles from the cytosol. Thiscompartmentalization allows cells to maintain quite different solutions within their cells and organelles, including different mixtures dissolved ions. Consequently, these membranes are constantly flanked by complex mixtures of salts at varied concentrations. To study membrane structure, one cannot neglect the contribution of the salts in the local solution. Ions perturb bilayer structure via specific interaction with the phospholipids, primarily with the headgroups. Experimental studies of these systems are somewhat at odds — scattering experiments with different …

Electric-Field Tunable Magnetoexcitons In Xenes/Hbn/Tmdc, Xenes/Hbn/Bp, And Xenes/Hbn/Tmtc Heterostructures, Roman Ya. Kezerashvili, Anastasia Spiridonova, Klaus Ziegler

Publications and Research

In this work, we propose novel van der Waals heterostructures composed of Xenes, transition metal dichalcogenides (TMDCs), phosphor ene, and transition metal trichalcogenides (TMTCs), which are separated by insulating hexagonal boron nitride (hBN) layers. We theoreti cally investigate the behavior of Rydberg indirect excitons in Xenes/hBN/TMDC, Xenes/hBN/phosphorene and Xenes/hBN/TMTC heterostructures subjected to parallel external electric and magnetic fields that are oriented perpendicular to the layers. By incorporating both isotropic and anisotropic materials, we demonstrate that excitonic properties can be effectively tuned through the external field strengths and the heterostructure design. Our results show that the exciton reduced mass and the …

Intrinsic Defects (Vacancies And Antisites) In Neutron Irradiated Cdsip2 Crystals, Timothy D. Gustafson, Elizabeth M. Scherrer, Nancy C. Giles, Kevin T. Zawilski, Peter G. Schunemann, Jonathan E. Slagle, Kent L. Averett, Larry E. Halliburton

Faculty Publications

Cadmium silicon phosphide (CdSiP₂) is a nonlinear optical material widely used in optical parametric oscillators. Intrinsic defects (vacancies and antisites) are responsible for unwanted broad optical absorption bands in these crystals that degrade the performance of the devices. In the present work, optical absorption and electron paramagnetic resonance (EPR) spectra are acquired (at room temperature and 12 K, respectively) from a neutron-irradiated CdSiP₂ crystal. After the irradiation, the crystal is highly absorbing from the band edge near 600 nm to beyond 1.3 μm because of overlapping defect-related absorption bands. Heating to 550 °C removes nearly all the …

Unveiling The Interplay Of Electronic And Phononic Excitations In Laser-Induced Oxygen Activation On Ru(0001), Xiangrui Wang, Jiamin Wang, Paul Spiering, Liping Liu, Jörg Meyer, Jerry L. Larue, Hongliang Xin

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding laser-induced dynamics on metal surfaces poses significant challenges due to the intricate interplay between electronic and phononic degrees of freedom, which evolve on distinct timescales. In this study, we introduce a machine learning-accelerated approach to molecular dynamics simulations that incorporates anisotropic electronic friction, providing deeper insights into these complex processes. Our framework extends the accessible time and length scales for nonadiabatic dynamics simulations, enabling a detailed investigation of the laser-induced activation of oxygen on the Ru(0001) surface. Statistical analysis reveals that strong electronic excitation dominates the first 800 fs after laser exposure. Beyond this timescale, energy deposited by electronic …

Coupled-Channel Calculations Of Fully Differential Cross Sections For Ionization In 75-Kev P + He Collisions, K. H. Spicer, N. W. Antonio, M. S. Schöffler, Michael Schulz, A. S. Kadyrov

Physics Faculty Research & Creative Works

The fully differential cross section is the most detailed quantity that can be measured or calculated to study ionization in few-body systems. For 75 keV proton collisions with helium, various experimental data are available. However, previous theoretical calculations found significant discrepancies across the entire range of data. In this work the wave-packet convergent close-coupling method is extended to calculating these cross sections for electrons ejected with energies from 1 to 75.4 eV. The approach utilizes a two-center expansion and correlated two-electron helium wave functions to describe the four-body proton-helium system. While there is good agreement with the experiment for electrons …

Multiply Differential Study Of Detachment With Simultaneous Target Excitation In Anion-Atom Collisions, M. Schulz, F. Herrmann, W. Zhang, D. V. Chicharro, A. Dorn, M. Grieser, F. Grussie, H. Kreckel, O. Novotny, F. Trost, A. Wolf, T. Pfeifer, C. D. Schröter

Physics Faculty Research & Creative Works

We have measured momenta of electrons and recoil ions in triple coincidence with neutralized projectiles for slow collisions between various anions and target atoms. From the data we extracted triple differential momentum and angular distributions of electrons ejected in detachment, in detachment with simultaneous target ionization (DI), and in detachment with simultaneous target excitation (DE). The DI rates relative to the DE rates depend sensitively on the projectile speed and on the properties of the target.

Continuous Pump-Probe Experiment To Observe Zeeman Wave-Packet Dynamics, K. L. Romans, K. Foster, S. Majumdar, B. P. Acharya, O. Russ, A. H.N.C. De Silva, Daniel Fischer

Physics Faculty Research & Creative Works

In this work, we study the coherent dynamics of an atomic Zeeman wave packet using a continuous pump-probe scheme. A polarized Zeeman wave packet is created in laser-cooled lithium atoms via few-photon excitation by a femtosecond laser pulse, producing a state with a magnetic moment tilted relative to an external magnetic field. The subsequent Larmor precession of the atomic magnetic moment is probed via continuous ionization by an optical dipole trap (ODT) laser. The resulting ionization fragments—photoelectrons and photo ions—are detected in coincidence using a cold target recoil ion momentum spectrometer (COLTRIMS). While the ODT facilitates further cooling of the …

Electrical Characterization Of Germanium Tin Alloys And Devices For Space Reliability, Kevin K. Choe

Theses and Dissertations

GeSn (germanium tin) alloys are potentially well suited for near-mid infrared space optoelectronic applications. Alloys of GeSn have similar properties to group III-V and mercury-cadmium-telluride semiconductors and are compatible with cost-effective complementary metal oxide semiconductor (CMOS) manufacturing technology. Recent progress in non-equilibrium remote plasma-enhanced chemical vapor deposition (RPECVD) has enabled the crystalline growth of GeSn with Sn concentrations of up to 10% without Sn surface segregation. Several experimental studies in previous literature report CVD- or molecular beam epitaxy (MBE)-grown GeSn alloys achieving a direct bandgap with 6%-9% Sn content. This novel growth technique opens opportunities for a cost-effective, next-generation optical …

Single-Molecule Orientation And Localization Microscopy, Sophie Brasselet, Matthew D. Lew

Electrical & Systems Engineering Publications and Presentations

Single-molecule localization microscopy (SMLM) offers enhanced spatial resolution in optical microscopy, providing detailed insights into the spatial organization of proteins in cells at the nanoscale. Over the past decade, SMLM has progressively incorporated the capability to retrieve the orientations of single molecules using their polarized dipolar emission pattern. Here we explore recent advancements in single-molecule orientation and localization microscopy (SMOLM), which yields super-resolved images of molecular three-dimensional (3D) orientations, wobble and 3D positions. This advancement opens possibilities to explore the nanoscale organization and conformation of biological molecules as well as to monitor and design local 3D optical fields in nanophotonics. …

Nonlinear Optics Through Femtosecond Light-Matter Interactions, Shah Faisal B. Mazhar

Dissertations, Theses, and Capstone Projects

This dissertation offers experimental and theoretical insights into nonlinear light-matter interactions induced by intense femtosecond (fs) laser pulses. It investigates key phenomena, including stimulated Raman scattering (SRS) from phonon and magnon quasiparticles, supercontinuum (SC) generation via self-phase modulation (SPM), conical emission (CE) arising from four-wave mixing (4WM), and modulation instability (MI) driven by cross-phase modulation (XPM) between SRS and SC processes. These effects are studied in diverse media using state-of-the-art femtosecond lasers.

The interplay among SRS, SC, 4WM, and MI is examined to probe vibrational modes and temperature-dependent magnetic excitations in condensed-matter systems. Experiments are conducted on anisotropic uniaxial calcite …

Simulating Chemiluminescence Spectra Of Oh Radical Using Quantum Dynamical Simulations, Triet M. Cao

Research from the Berry Summer Thesis Institute, 2025

Chemiluminescence is a phenomenon of light emission that occurs when molecules transition from an excited state to the ground state. This phenomenon is widely utilized in applications ranging from quantifying product yields in chemical reactions to biological imaging and atmospheric chemistry studies. It has also been used in many crucial applications in the scarce conditions of heat and electricity, such as light sources for astronomy discovery or deep-sea diving. A notable example of such reactions is combustion, where highly reactive hydroxyl radicals (OH) are products. These radicals exhibit a chemiluminescence spectrum because of the interaction between their ground state and …

The Effects Of I-127 On A High-Granularity Lii(Eu) Bonner Sphere Spectrometer Response Matrix, Adam Card, Andrew W. Decker

Student Publications

The measurement of neutron energy spectra using a Bonner Sphere Spectrometer (BSS) requires spectrum unfolding. One necessary component of spectrum unfolding is an accurate neutron response matrix, which describes the energy shift experienced by neutrons when passing through different moderation configurations prior to detection. Leveraging the recently-released ENDF/B-VIII.0 cross-section library, this work details the development of a new LiI(Eu) scintillator response matrix that features improved energy binning granularity as well as increased isotopic and statistical accuracy. Using MCNP6.2, detector responses were modeled at 105 discrete log-equi-spaced incident neutron energies from 1.000 × 10⁻⁹ to 2.512 × 10¹ MeV …

Non-Linear Atom-Laser Interactions Using Rubidium Pump-Probe Spectroscopy, Grace Neil

Beyond: Undergraduate Research Journal

An experiment was performed to demonstrate the pump-probe spectroscopy of Rubidium (Rb) vapor, revealing the nonlinear atom-laser interactions in the 5S1/2 ↔ 5D5/2 transition in Rb that can be used to generate quantum entanglement between two laser beams. The setup included a tunable infrared diode laser, optical mirrors, photodiode-detectors, a beam-splitter, and a temperature- regulated rubidium gas chamber, all of which are controlled by the TeachSpin laser controller and monitor. The output from the laser-diode was split into a pump (90%) and a signal probe (10%), which intersected in counter-propagating directions inside the Rubidium chamber. The analysis shows that in …

Volumetric Imaging Of Cellular Dynamics Using Light-Sheet Microscopy: From Subcellular Structures To Whole Organisms, Md Nasful Huda Prince

Optical Science and Engineering ETDs

Advancing biomedical imaging requires platforms that combine high-resolution, speed, and stability across biological scales. This dissertation presents three innovations designed to address limitations of conventional light-sheet and oblique plane imaging. First, we introduce Reflected Inline Detection in Epi-Oblique Plane Microscopy (RIDE-OPM), a compact and drift-resistant system that eliminates a tertiary detection path while maintaining alignment flexibility, enabling robust long-term live imaging. Second, we present a high-speed Axially Swept Light-Sheet Microscopy (ASLM) platform for cleared tissues, using dual foci and synchronized sweeping to achieve isotropic sub-micron resolution at up to 40 frames-per-second, a fourfold improvement over standard ASLM. Integrated with a …

Phase Nanoscopy With Correlated Frequency Combs, Xiaobing Zhu

Optical Science and Engineering ETDs

In this dissertation a sensing method applying to any physical quantity that modifies optical phase is developed. Two pulses are produced inside a synchronously pumped Optical Parametric Oscillator, generating two identical, undistinguishable frequency combs. The physical quantity to be measured applies a small phase shift/round trip to one of the pulses, resulting in a frequency shift of the corresponding comb. The latter frequency is measured as a beat by interfering the two combs on a detector. A world record resolution, close to the quantum limit, of 0.033 nanoradian (corresponding to 0.006 fm in displacement) is achieved. A detailed analysis of …

Advancing Diamond Quantum Sensors: Isotropic Flux Concentrators And Phase Noise Mitigation, Maziar Saleh Ziabari

Optical Science and Engineering ETDs

Two methods for improving the sensitivity of nitrogen vacancy quantum sensors in diamond are explored. First, by passively concentrating the magnetic flux, three orthogonally oriented ferrite truncated cone pairs amplify the field isotropically by 19 times, allowing measurement of Earth's field without a bias field and increasing sensitivity. Through thorough analysis, modeling and tuning a novel 3-dimensional flux concentrator system, we achieve a fractional standard deviation of less than 1% anisotropy and quantify minimal deadzones and ambient temperature-limited variations below 40 nT/hour. Second, we characterize, model and calculate phase noise in NV experiments, which in NV sensors is effectively indistinguishable …

A Molecular Dynamics Study Of Single Crystal And Intergranular Crack Growth Behavior In WX M1−X Binary Aloys (M = V, Mo, Ta, Re), Samuel C. Wagers, Adib J. Samin

Faculty Publications

This study employs molecular dynamics simulations to investigate the fracture behavior of four binary refractory alloys W_xM_1−x (M = V, Mo, Ta, Re) and their dependence on crystallographic orientation, composition, and grain boundary (GB) structure, focusing on six distinct low-sigma grain boundaries. The simulations reveal that the effect of composition is complex with the most pronounced effect, accompanied by the maximum or minimum stress intensity factor, generally occurring at intermediate compositions. All compositions showed a higher fracture resistance in the [110] orientation compared to the [100] orientation. There was a strong thermodynamic tendency for Mo and V, …

Monitoring The Degradation Of Methylammonium Lead Iodide Perovskite Thin Films By Uv Exposure, Addison Dau, Ethan Dale, James Heyman

Macalester Journal of Physics and Astronomy

This project involved lead-halide perovskite thin films, a promising novel solar cell material. The goal was to monitor the composition of the samples during degradation from blue light exposure using vibrational spectroscopy. IR and THz spectroscopy measured the composition of the samples in-situ between periods of blue light exposure, probing the N-H and Pb-I vibrational modes. Plotting MA and MAPI concentrations versus blue light exposure showed that the MA and MAPI concentrations initially decreased in a gradual linear fashion until a threshold photon flux where both vibrational absorption bands simultaneously collapsed. This suggests that there is a discontinuous change in …

2d Cuo/Rgo Nanocomposite: A Novel Architecture For Enhanced Cr(Vi) Photo-Reduction, Islam Gomaa, Nasser M. Hosny, Medhat A. Ibrahim

Nanotechnology Research Centre

he urgent need for efficient detoxification of carcinogenic hexavalent chromium (Cr(VI)) in aquatic environments has driven the development of advanced photocatalytic materials. This study presents the synthesis of 2D CuO/reduced graphene oxide (rGO) nanocomposite via probe sonication, designed to synergistically enhance the photocatalytic reduction of Cr(VI) to less toxic Cr(III). The nanocomposite was meticulously characterized using XRD, HRTEM, FESEM, XPS, and UV-Vis diffuse reflectance spectroscopy. Structural analysis confirmed the formation of CuO nanosheets (average size: 396 nm, thickness: 6 nm) integrated with rGO, where the rGO acted as an electron acceptor, mitigating charge recombination. XPS revealed Cu²⁺ in CuO and …