Botany Commons^™

A New Species Of Barssia (Ascomycota, Helvellaceae) From Turkey, Hasan Hüseyi̇n Doğan, Fuat Bozok, Hatira Taşkin

Turkish Journal of Botany

A new species of the genus Barssia was identified from Turkey using both morphological and phylogenetic analysis of the ribosomal internal transcribed spacer region (ITS rDNA) and nuclear ribosomal large subunit (LSU rDNA) gene sequences. Macroscopic and microscopic features of the fresh samples were photographed and a diagnostic key of the genus Barssia was built considering characteristics of known species.

Validation Of The Quercus (Fagaceae) Taxa Described By Djavanchir Khoie, Parisa Panahi, Ziba Jamzad

Turkish Journal of Botany

In a taxonomic revision of the genus Quercus L. in Iran, 25 taxa named by Djavanchir Khoie in 1967 were studied and evaluated. These taxa were described in his PhD thesis but not validly published according to Arts. 30.8. and 40.1. of the ICN. According to our studies, seven of them are accepted taxa. In this paper we validate them. The original descriptions are provided, an identification key for these taxa is presented, and the types are designated in MPU.

Noccaea Ali-Atahanii (Brassicaceae): A New Species From Southern Anatolia, Yelda Güzel, Bariş Özüdoğru, Sami̇m Kayikçi, Kurtuluş Özgi̇şi̇

Turkish Journal of Botany

Noccaea ali-atahanii , a new Brassicaceae species from southern Anatolia, is described herein. It is mostly similar to N. aghrica , but can be readily distinguished by the presence of apical placentation and orbiculate fruit with wings extending almost evenly from the base to the apex. Its phylogenetic relationships within the genus are provided based on the nuclear-encoded ribosomal internal transcribed spacer region. Carpological and ecological features of N. ali-atahanii and related species are also discussed.

การแยกและการคัดเลือกราไมคอร์ไรซาเพื่อกระตุ้นการเจริญของต้นกล้ากล้วยไม้น้ำ Epipactis Flava Seidenf., ญาณิศา พันธุ์สังข์

Chulalongkorn University Theses and Dissertations (Chula ETD)

จากการศึกษาครั้งนี้ สามารถแยกราเอนโดไฟต์จากกล้วยไม้น้ำ Epipactis flava Seidenf. ซึ่งเสี่ยงต่อการสูญพันธุ์ ได้ทั้งหมด 50 ไอโซเลต เป็นราที่แยกได้จากราก 35 ไอโซเลต และจากโปรโตคอร์ม 15 ไอโซเลต ราที่แยกได้ทั้งหมดถูกนำมาตรวจสอบการกระตุ้นการงอกของเมล็ดกล้วยไม้น้ำ พบว่ามีรา 7 ไอโซเลต ได้แก่ MSR07 MSR24 MSR34 MSP01 MSP02 MSP04 และ MSP13 ที่สามารถกระตุ้นการงอกของเมล็ดกล้วยไม้น้ำบนอาหารเลี้ยงเชื้อ Oat Meal Agar (OMA) ได้ภายใน 30 วัน หลังหว่านเมล็ด การกระตุ้นการงอกของเมล็ดและการพัฒนาของโปรโตคอร์มด้วยราทั้ง 7 ไอโซเลตถูกทดสอบบนอาหารเลี้ยงเชื้อ OMA เป็นเวลา 4 เดือน หลังหว่านเมล็ด พบว่ามีรา 6 ไอโซเลตที่สามารถกระตุ้นการงอกของเมล็ดและส่งเสริมการพัฒนาของโปรโตคอร์มจนถึงระยะที่ 2 ยกเว้นราไอโซเลต MSP04 ที่ไม่ส่งเสริมการพัฒนาของโปรโตคอร์ม ค่าดัชนีของอัตราการงอก (Germination rate index, GRI) ของราทั้ง 7 ไอโซเลตมีค่าอยู่ระหว่าง 56.62-148.14 โดยไอโซเลต MSP13 ให้ค่า GRI สูงที่สุด (148.14) ซึ่งไม่แตกต่างอย่างมีนัยสำคัญทางสถิติกับค่า GRI ของราไอโซเลต MSP01 (139.41) ค่าดัชนีของอัตราการพัฒนาของโปรโตคอร์ม (developmental rate index, DRI) ของราทั้ง 7 ไอโซเลตมีค่าอยู่ระหว่าง 0-33.20 จากการศึกษาพบว่า ราไอโซเลต MSP01 ให้ค่า DRI สูงที่สุด (33.20) ขณะที่เมล็ดที่ไม่ได้เพาะเลี้ยงร่วมกับรา (ชุดควบคุม) มีค่า GRI และ DRI เท่ากับ 6.76 และ 0 ตามลำดับ จากลักษณะทางสัณฐานวิทยาและการวิเคราะห์ทางชีววิทยาโมเลกุลที่ตำแหน่ง …

Birds And Vegetation Structure Of Isolated Juniper And Oak Communities In The Trans-Pecos Chihuahuan Desert., Kayla Garza

Open Access Theses & Dissertations

Birds of the Trans-Pecos region are historically understudied, with most literature covering birds of desert grasslands and scrub in New Mexico and Northern Mexico. A multitude of vegetation communities within the Chihuahuan Desert have also been neglected due to this gap in the research, for reasons including lack of access to public or preserve land in West Texas, and rough terrain. Indio Mountains Research Station (IMRS), is located 42-km southwest of Van Horn, Texas and encompasses many different vegetation communities, including juniper-oak habitats of arroyo and canyon systems. The purpose of this study was to document the bird species utilizing …

A New Anatomically-Preserved Plant From The Lower Devonian Of Quebec (Canada): Implications For Euphyllophyte Phylogeny And Early Evolution Of Structural Complexity, Selin Toledo

Cal Poly Humboldt theses and projects

An abrupt transition in the fossil record between Early Devonian plants with simple structure and structurally-complex later Devonian plants, has frustrated efforts to understand patterns of phylogeny across the Early/Middle Devonian boundary and the evolution of complex forms. Both these aspects have important implications for lignophyte and seed plant evolution. In the first chapter, I evaluate phylogenetic relationships between the earliest seed plants, Aneurophytales, and Stenokoleales, using comprehensive taxon sampling (28 species, including all relevant permineralized species) and a set of 40 discrete and nine continuous morpho-anatomical characters. Analysis of this dataset supports the three traditional taxonomic groups (seed plants, …

Assessing Spatio-Temporal Patterns Of Forest Decline Across A Diverse Landscape In The Klamath Mountains Using A 28-Year Landsat Time-Series Analysis, Drew S. Bost

Cal Poly Humboldt theses and projects

Rates of tree mortality in California and the Pacific Northwest have greatly increased in recent years, driven largely by pest and pathogen outbreaks as well as the effects of hotter, warmer droughts. While there have been a multitude of regional-scale assessments of mortality and forest decline, landscape-level studies are necessary to better identify forests that are most vulnerable to decline and to anticipate future changes. This need is particularly notable in the remote and little-studied mountains of northwest California, which are renowned for their diverse, heterogeneous vegetation types. A recent observation of elevated levels of Shasta red fir (Abies …

Jeweled Spider Flies (Eulonchus Tristis) Are Important Pollinators Of Iris Bracteata, A Rare Siskiyou Mountain Endemic, Jean-Paul E. Ponte

Cal Poly Humboldt theses and projects

Little is known about the pollination biology of the Pacific Coast Irises (Iris: series Californicae, hereafter PCI), especially who visits and pollinates their flowers. In general, Iris flowers are considered bee-pollinated, however, flies in the genus Eulonchus (Acroceridae) are known to visit some PCI members. Therefore, I assessed the relative importance of Eulonchus and other insect visitors to the pollination of a rare PCI species native to the Siskiyou Mountains, I. bracteata.

Methods. I quantified pollinator importance for all flower visitors at sites in northern California and southern Oregon as the product of average visit rate and …

Sown Forb Performance In Cp42 Fields, Nathan Theel, Mark Sherrard

Undergraduate Student Work

CP42 is a general conservation practice that attempts to establish pollinator-friendly habitat

In total, >500,000 acres have been converted to CP42 (>40% of which is in Iowa) [1]

To date, there has been no formal assessment of practice success (i.e., post-seeding forb establishment)

In this study, we assess forb establishment in randomly selected CP42 fields near Cedar Falls, Iowa

We identify forbs with high/low establishment and relate this to seed cost in an effort to improve seed mix design

Floral Resource Dynamics For Pollinators In A Central Iowa Tallgrass Prairie Restoration, Lily Conrad, Ben Hoksch, Mark C. Myers

Undergraduate Student Work

Recently, native and managed colonies of pollinators, including bees, butterflies, and other insects, have experienced a largescale declines. In an effort to restore habitat for pollinators, the United States Department of Agriculture’s Farm Service Agency (FSA) created the CP-42 Pollinator Habitat conservation practice under the Conservation Reserve Program. This program pays private landowners to restore habitat for pollinator species with ecological and economic importance. To qualify for the program, CP-42 seed mixes must include:

• A minimum of 9 pollinator-friendly flowering plants,

• A minimum of three species in bloom during each of three seasonal periods (April-June 15, June 15-July, …

Mary Agnes Chase, James P. Smith Jr

Botanical Studies

No abstract provided.

Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Association studies use statistical links between genetic markers and the phenotype variation across many individuals to identify genes controlling variation in the target phenotype. However, this approach, particularly conducted on a genome-wide scale (GWAS), has limited power to identify the genes responsible for variation in traits controlled by complex genetic architectures. In this study, we employ real-world genotype datasets from four crop species with distinct minor allele frequency distributions, population structures and linkage disequilibrium patterns. We demonstrate that different GWAS statistical approaches provide favourable trade-offs between power and accuracy for traits controlled by different types of genetic architectures. FarmCPU provides …

Intragenic Meiotic Crossovers Generate Novel Alleles With Transgressive Expression Levels, Sanzhen Liu, James C. Schnable, Alina Ott, Cheng-Ting Yeh, Nathan M. Springer, Jianming Yu, Gary Muehlbauer, Marja C. P. Timmermans, Michael J. Scanlon, Patrick S. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Meiotic recombination is an evolutionary force that generates new genetic diversity upon which selection can act. Whereas multiple studies have assessed genome-wide patterns of recombination and specific cases of intragenic recombination, few studies have assessed intragenic recombination genome-wide in higher eukaryotes. We identified recombination events within or near genes in a population of maize recombinant inbred lines (RILs) using RNA-sequencing data. Our results are consistent with case studies that have shown that intragenic crossovers cluster at the 5' ends of some genes. Further, we identified cases of intragenic crossovers that generate transgressive transcript accumulation patterns, that is, recombinant alleles displayed …

Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

A decline in land and water productivity, increase in the cost of cultivation, and labor-intensive practices are affecting the cereal-based farming system in Nepal, particularly in the Indo-Gangetic Plains (IGP). Conservation agriculture (CA) practices have been found to be the climate-, energy-, and labor-smart and sustainable agricultural production technologies. Sustainable and Resilient Farming System Intensification (SRFSI) has been working since 2014 in response to the sustainability of the cereal-based (rice–wheat and rice–maize) farming in Sunsari and Dhanusha districts of Nepal. This study was conducted to assess the adoption and scaling up of CA in addition to input usage, production, net …

Improving An Active-Optical Reflectance Sensor Algorithm Using Soil And Weather Information, G. M. Bean, N. R. Kitchen, J. J. Camberato, R. B. Ferguson, F. G. Fernandez, D. W. Franzen, C. A. M. Laboski, E. D. Nafziger, J. E. Sawyer, P. C. Scharf, J. Schepers, J. S. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Active-optical reflectance sensors (AORS) use light reflectance characteristics from a crop canopy as an indicator of the plant’s N health. However, studies have shown AORS algorithms used in conjunction with measured reflectance characteristics for corn (Zea mays L.) N fertilizer rate recommendations are not consistently accurate. Our objective was to determine if soil and weather information could be utilized with an AORS algorithm developed at the University of Missouri (ALG_MU) to improve in-season (~V9 corn development stage) N fertilizer recommendations. Nitrogen response trials were conducted across eight states over three growing seasons, totaling 49 sites with soils …

Interesting, Provocative, And Enigmatic: Morphological Observations On Southeastern Quillworts (Isoetes Isoetaceae, Lycopodiophyta, Rebecca D. Bray, Peter W. Schafran, Lytton J. Musselman

Biological Sciences Faculty Publications

The unique morphology of quillworts has received limited attention, and such studies have been limited to only a few species. Our extensive field work during the past two decades has revealed variation in the structures of the plant, including the rhizomorph, scales, phyllopodia, and abscission caps. Polarity of the axes of southeastern quillwort rhizomorphs varies from discoid (most species), to elongate, to upright with axis branching in several species. In species of intermittent streams, these branched rhizomorphs produce plantlets that break off in running water. Scales are tiny brown or black structures in alternating whorls with sporophylls (leaves). They are …

Biomass Production Of Herbaceous Energy Crops In The United States: Field Trial Results And Yield Potential Maps From The Multiyear Regional Feedstock Partnership, Dokyoung Lee, Ezra Aberle, Eric K. Anderson, William Anderson, Brian S. Baldwin, David D. Baltensperger, Michael Barrett, Jurg Blumenthal, Stacy Bonos, Joe Bouton, David I. Bransby, Charlie Brummer, Pane S. Burks, Chengci Chen, Christopher Daly, Jose Egenolf, Rodney L. Farris, John H. Fike, Roch E. Gaussoin, John R. Gill, Kenneth Gravois, Michael D. Halbleib, Anna Hale, Wayne Hanna, Keith Harmoney, Emily A. Heaton, Ron W. Heiniger, Lindsey Hoffman, Chang O. Hong, Gopal Kakani, Robert Kallenbach, Bisoondat Macoon, James C. Medley, Ali Missaoui, Robert B. Mitchell, Ken J. Moore, Jesse I. Morrison, Gary N. Odvody, Jonathan D. Richwine, Richard Ogoshi, Jimmy Ray Parrish, Lauren Quinn, Ed Richard, William L. Rooney, J. Brett Rushing, Ronnie Schnell, Matt Sousek, Scott A. Staggenborg, Thomas Tew, Goro Uehara, Donald R. Viands, Thomas Voigt, David Williams, Linda Williams, Lloyd Ted Wilson, Andrew Wycislo, Yubin Yang, Vance Owens

Department of Agronomy and Horticulture: Faculty Publications

Current knowledge of yield potential and best agronomic management practices for perennial bioenergy grasses is primarily derived from small-scale and short-term studies, yet these studies inform policy at the national scale. In an effort to learn more about how bioenergy grasses perform across multiple locations and years, the U.S. Department of Energy (US DOE)/Sun Grant Initiative Regional Feedstock Partnership was initiated in 2008. The objectives of the Feedstock Partnership were to (1) provide a wide range of information for feedstock selection (species choice) and management practice options for a variety of regions and (2) develop national maps of potential feedstock …

Assessing Explanatory Factors For Variation In On-Farm Irrigation In Us Maize-Soybean Systems, Katherine E.B. Gibson, Haishun S. Yang, Trenton E. Franz, Dean E. Eisenhauer, John B. Gates, Paolo Nasta, Bhupinder S. Farmaha, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Irrigation exhibits large variation across producer fields, even within same region and year. A knowledge gap exists relative to factors that explain this variation, in part due to lack of availability of high-quality irrigation data from multiple field-years. This study assessed sources of variation in irrigation using a large database collected during 9 years (2005–2013) from ca. 1400 maize and soybean producer fields in Nebraska, central USA (total of 12,750 field-year observations). The study area is representative of ca. 4.5 million ha of irrigated land sown with maize and soybean. Influence of biophysical (weather, soil, and crop type) and behavioral …

Lowland Rice Nutrient Responses For The Guinea And Sudan Savannas Of Nigeria, Christogonus K. Daudu, Enemona M. Ugbaje, Eunice Y. Oyinlola, Bitrus D. Tarfa, Adamu A. Yakubu, Ishaku Y. Amapu, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

Copyright © 2018 by the American Society of Agronomy

This is an open access article

doi:10.2134/agronj2017.08.0469

Mulch And Groundcover Effects On Soil Temperature And Moisture, Surface Reflectance, Grapevine Water Potential, And Vineyard Weed Management, Christina M. Bavougian, Paul E. Read

Department of Agronomy and Horticulture: Faculty Publications

The objectives of this research were to identify alternatives to glyphosate for intra- row (under-trellis) vineyard floor management and to evaluate the potential for intra- row and inter-row (alleyway) groundcovers to reduce vegetative vigor of `Marquette' grapevines (Vitis spp.) in a southeast Nebraska vineyard. The experiment was a randomized factorial design with five intra-row treatments (crushed glass mulch [CG], distillers' grain mulch [DG], creeping red fescue [CRF], non-sprayed control [NSC], and glyphosate [GLY]) and three inter-row treatments (creeping red fescue [CRF], Kentucky bluegrass [KB], and resident vegetation [RV]). Treatments were established in 2010-2011 and measurements were conducted during 2012 …