Oceanography and Atmospheric Sciences and Meteorology Commons^™

The Path To Preservation: Using Proteomics To Decipher The Fate Of Diatom Proteins During Microbial Degradation, Brook L. Nunn, Ying S. Ting, Lars Malmström, Yihsuan S. Tsai, Angela Aquier, David R. Goodlett, H. Rodger Harvey

OES Faculty Publications

We drew upon recent advances in tandem mass spectrometry-based proteomic analyses in order to examine the proteins that remain after a diatom bloom enters the stationary phase, precipitates out of the photic zone, and is subjected to microbial degradation over a 23-d period within a controlled laboratory environment. Proteins were identified from tandem mass spectra searched against three different protein databases in order to track proteins from Thalassiosira pseudonana and any potential bacterial contributions. A rapid loss of diatom protein was observed over the incubation period; 75% of the proteins initially identified were not detected after 72 h of exposure …

Effect Of The Heterotrophic Dinoflagellate Oxyrrhis Marina And The Copepod Acartia Tonsa On Vertical Carbon Flux In And Around Thin Layers Of The Phytoflagellate Isochrysis Galbana, A. B. Bochdansky, S. M. Bollens, G. C. Rollwagen-Bollens, A. H. Gibson

OES Faculty Publications

Dynamics of material and energy flow through food webs differ when resources are allocated in patches in comparison to situations in which the same resources are distributed evenly throughout the water column. Thin layers of plankton are special cases of such resource patches. While previous studies have predominantly focused on the response of organisms to these layers, we investigated how 2 types of grazers in turn affect thin layers. In an experimental study with tightly controlled environmental conditions, we monitored the redistribution of particulate organic (POC), dissolved organic (DOC) and inorganic (DIC) carbon from thin layers of Isochrysis galbana. …

Role Of Macroscopic Particles In Deep-Sea Oxygen Consumption, Alexander B. Bochdansky, Hendrik M. Van Aken, Gerhard J. Herndl

OES Faculty Publications

Macroscopic particles (> 500 µg), including marine snow, large migrating zooplankton, and their fast-sinking fecal pellets, represent primary vehicles of organic carbon flux from the surface to the deep sea. In contrast, freely suspended microscopic particles such as bacteria and protists do not sink, and they contribute the largest portion of metabolism in the upper ocean. In bathy- and abyssopelagic layers of the ocean (2,000-6,000 m), however, microscopic particles may not dominate oxygen consumption. In a section across the tropical Atlantic, we show that macroscopic particle peaks occurred frequently in the deep sea, whereas microscopic particles were barely detectable. In …

Causes Of Tropical Atlantic Paleo-Salinity Variation During Periods Of Reduced Amoc, Xiuquan Wan, Ping Chang, Matthew W. Schmidt

OES Faculty Publications

During periods of reduced Atlantic meridional overturning circulation (AMOC) associated with a freshening of northern North Atlantic surface water, paleo proxy records indicate a corresponding surface salinity increase over the entire tropical Atlantic. Although latitudinal-shifts in the mean position of the Atlantic Intertropical Convergence Zone (ITCZ) can explain certain features of the paleo salinity reconstructions, this mechanism does not offer an explanation for the reconstructed basin-wide paleo-salinity response to AMOC change. Here, we present new results from general circulation model simulations that suggest the sea surface salinity (SSS) increase in the tropical north Atlantic during periods of weakened AMOC is …

Interannual Differences In Nutrient Dynamics During A Brown Tide Bloom (Aureococcus Anophagefferens) And The Interaction Of A. Anophagefferens With Heterotrophic Bacteria, George Eric Boneillo

OES Theses and Dissertations

Blooms of Aureococcus anophagefferens (Brown Tides) in Chincoteague Bay were observed over a six-year period (2002–2007) during which interannual differences in nitrogen and carbon uptake and concentrations of dissolved constituents were compared at two sites, one in Maryland and the other in Virginia. Overall, I observed an increase in bloom intensity and duration over time. No single nitrogen compound was responsible for fueling blooms. Instead, A. anophagefferens demonstrated the ability to use a wide range of nitrogen compounds to meet its nutritional demands. Results show that NO₃-, NH₄+, urea, and DFAA were taken up simultaneously during …

Comparison Of In Situ And Columnar Aerosol Spectral Measurements During Texaqs-Gomaccs 2006: Testing Parameterizations For Estimating Aerosol Fine Mode Properties, Dean B. Atkinson, Paola Massoli, Norman T. O'Neill, Patricia K. Quinn, Sarah D. Brooks, Barry Lefer

Chemistry Faculty Publications and Presentations

During the 2006 Texas Air Quality Study and Gulf of Mexico Atmospheric Composition and Climate Study (TexAQS-GoMACCS 2006), the optical, chemical and microphysical properties of atmospheric aerosols were measured on multiple mobile platforms and at ground based stations. In situ measurements of the aerosol light extinction coefficient (σep) were performed by two multi-wavelength cavity ring-down (CRD) instruments, one located on board the NOAA R/V Ronald H. Brown (RHB) and the other located at the University of Houston, Moody Tower (UHMT). An AERONET sunphotometer was also located at the UHMT to measure the columnar aerosol optical depth (AOD). The σep data …

Concentrations, Distributions And Chemical Speciation Of Zinc And Cadmium In The Equatorial And South Atlantic Ocean, Gonzalo G. Carrasco

OES Theses and Dissertations

Certain trace metals are important cofactors in enzymatic systems and are thus, essential for life in the world's oceans. Two of these metals, Zn and Cd, are required by phytoplankton for enzymes that facilitate carbon uptake (Morel and Price, 2003). In seawater the total dissolved concentration of a metal (MTD) is distributed among different chemical species and this chemical speciation dictates a metal's bioavailability. Strong organic metal-binding ligands greatly affect the metal's chemical speciation in the ocean, potentially limiting phytoplankton growth by reducing the concentrations of Zn²⁺ and Cd²⁺, the bioavailable forms of these two metals to …

Trace Metal Biogeochemistry In The Western North Pacific, Peter Lynn Morton

OES Theses and Dissertations

Dissolved and suspended particulate samples collected during the Intergovernmental Oceanographic Commission 2002 Contaminant Baseline Survey were analyzed to determine the surface and vertical distributions of Cd, Co, Cu, Mn, Ni Zn and Pb across the western and central North Pacific.

Dissolved trace metal concentrations were measured using a novel isotope dilution-ICP-MS method after extraction over an 8-hydroxyquinoline resin column and validated through the use of the SAFe consensus reference materials. Filtered suspended particulate matter was digested using an HCl/HNO3/HF mixture and analyzed by HR-ICP-MS to obtain total particulate concentrations for the trace metals and other tracer elements such as Al, …

Aerosol Optical Depth Retrieval For Spot Hrv Images, Chien-Hui Liu, Gin-Rong Liu

Journal of Marine Science and Technology–Taiwan

Atmospheric aerosol is an important factor of the Earth’s radiation budget. The aerosol optical depth (AOD) is also the key parameter in generating surface products from remotely sensed data. An image-based retrieval algorithm of aerosol characteristics and surface reflectance is used to retrieve the AOD from SPOT satellite images in this paper. The accuracy of retrieved AOD is assessed using sunphotometer measurements. SPOT satellite images in Jhongli , Taoyuan county are used to testify the algorithm. The results show that the rootmean-square error (RMSE) of the retrieved AOD at 0.55 µm is 0.10. Over the range of measured AOD 0.08~0.34, …

Unsteady Motions Of Separated Shear Layer In Wake Flow Due To Upstream Disturbance, Chin-Tsan Wang, Jun-Ji Miau, Cheng Kuang Shaw

Journal of Marine Science and Technology–Taiwan

The phenomenon of physical wake flow is complex and remains relatively unknown, especially for the relationship between the span-wise motions of separated shear layers and low frequency variations embedded in the vortex shedding process of upstream disturbances. In this study experiments were executed by situating a mesh grid and controlling cylinder upstream. Results showed that the integral time scale of the span-wise motions for a separated shear layer was close to that of the low frequency variations for an upstream disturbance. This evidence supports the idea that span-wise motions of a separated shear layer and the low frequency variations should …

The 2009-2010 El Nino: Hydrologic Relief To U.S. Regions, Glenn A. Tootle, Thomas C. Piechota, Oubeidillah Aziz, William Paul Miller, Venkat Lakshmi, John A. Dracup, Carly Jerla

Civil and Environmental Engineering and Construction Faculty Research

Current forecasts by the U.S. National Oceanic and Atmospheric Administration (NOAA) are that the Pacific Ocean will experience El Niño conditions in late 2009 and into 2010. These forecasts are similar to past El Niño events in 1972–1973, 1982–1983, 1986–1987, and 2002–2003.

Evaluating the hydrologic conditions for these past El Niño events reveals that during these times, surface water supply conditions improved in many parts of the United States, including the Southeast, Midwest, and Southwest. At the same time, the Pacific Northwest and other specific regions of the United States experienced below-average water supply conditions. This is consistent with the …

Analyzing Spatial Patterns In Reefscape Ecology Via Remote Sensing, Benthic Habitat Mapping, And Morphometrics, Shanna K. Dunn

HCNSO Student Theses and Dissertations

A growing number of scientists are investigating applications of landscape ecology principles to marine studies, yet few coral reef scientists have examined spatial patterns across entire reefscapes with a holistic ecosystem-based view. This study was an effort to better understand reefscape ecology by quantitatively assessing spatial structures and habitat arrangements using remote sensing and geographic information systems (GIS).

Quantifying recurring patterns in reef systems has implications for improving the efficiency of mapping efforts and lowering costs associated with collecting field data and acquiring satellite imagery. If a representative example of a reef is mapped with high accuracy, the data derived …

Distribution And Diversity Of Archaeal And Bacterial Ammonia Oxidizers In Salt Marsh Sediments, Nicole S. Moin, Katelyn A. Nelson, Alexander Bush, Anne E. Bernhard

Biology Faculty Publications

Diversity and abundance of ammonia-oxidizing Betaproteobacteria (β-AOB) and archaea (AOA) were investigated in a New England salt marsh at sites dominated by short or tall Spartina alterniflora (SAS and SAT sites, respectively) or Spartina patens (SP site). AOA amoA gene richness was higher than β-AOB amoA richness at SAT and SP, but AOA and β-AOB richness were similar at SAS. β-AOB amoA clone libraries were composed exclusively of Nitrosospira-like amoA genes. AOA amoA genes at SAT and SP were equally distributed between the water column/sediment and soil/sediment clades, while AOA amoA sequences at SAS were primarily affiliated with the …

Sfa Weather Station-December 2009, Arthur Temple College Of Forestry And Agriculture, Stephen F. Austin State University

Weather Station Data

No abstract provided.

Climate Change, Coral Reef Ecosystems, And Management Options For Marine Protected Areas, Brian D. Keller, Daniel F. Gleason, Elizabeth Mcleod, Christa M. Woodley, Satie Airame, Billy D. Causey, Alan M. Friedlander, Rikki Grober-Dunsmore, Johanna E. Johnson, Steven Miller, Robert S. Steneck

Marine & Environmental Sciences Faculty Articles

Marine protected areas (MPAs) provide place-based management of marine ecosystems through various degrees and types of protective actions. Habitats such as coral reefs are especially susceptible to degradation resulting from climate change, as evidenced by mass bleaching events over the past two decades. Marine ecosystems are being altered by direct effects of climate change including ocean warming, ocean acidification, rising sea level, changing circulation patterns, increasing severity of storms, and changing freshwater influxes. As impacts of climate change strengthen they may exacerbate effects of existing stressors and require new or modified management approaches; MPA networks are generally accepted as an …

Fisheries Research Report No. 197 - Coastal And Marine Resource Condition Monitoring - Scoping Project, Brett A. Human, Justin I. Mcdonald

Fisheries Research Reports

Final NRM Report – Project 073007

Part 1– Knowledge review and gap analysis: Resource condition monitoring in the Pilbara and Kimberley regions of Western Australia

This report details extensive literature searches for both research and monitoring programs that have been undertaken in the marine and coastal environments of the Pilbara and Kimberley region of northern Western Australia. The Pilbara and Kimberley region is remote and difficult to access, resulting in very little monitoring effort of the marine and coastal environments in that region.

We currently know very little of the condition of marine and coastal natural resources in the Pilbara …

A Study Of The Mesosphere-Lower Thermosphere: Noctilucent Cloud Observations And Rocket Borne Density Measurements, Shelton Simmons

All Theses

Herein, a study of a noctilucent cloud, NLC, display from 17 July 2007 is analyzed. A photogrammetric analysis was applied to time lapsed photographs taken from two observation sites, RŸgen and KŸhlungsborn, Germany. Both Kelvin-Helmholtz instabilities and internal gravity waves were identified during the NLC display based on the typical characteristics of such waves in the mesopause region. With the two observation sites, the location of details can be identified with an accuracy of ±0.125¡ longitude and ±0.5¡ latitude. A gravity wave with a wavelength of 50km and Kelvin-Helmholtz instability or gravity wave of wavelength 16.5km were observed. The 16.5km …

Spatial Distribution Of Petroleum Hydrocarbons In Sediment Cores From Blind Pass, St. Pete Beach, Florida, Charles M. Featherstone, John Proni, Thomas P. Carsey, Cheryl J. Brown, Madeleine M. Adler, Patricia Blackwelder, Husain Alsayegh, Teresa A. Hood, Christina Piela, Donald S. Mccorquodale Jr.

Marine & Environmental Sciences Faculty Reports

One hundred and one sediment cores were collected to characterize the spatial distribution of petroleum hydrocarbons within and just outside Blind Pass, St. Pete Beach, Florida. Twenty-five percent of the cores exhibited levels of petroleum hydrocarbons above detection limits of the gas chromatograph/flame ionization detector (GC/FID) (0.01 mg/Kg), but at generally low concentrations. Petroleum hydrocarbon speciation studies of these samples (gas chromatography/mass spectroscopy [GC/MS]) indicate above-detection level (1 μg/Kg) petroleum hydrocarbons are similar to the non-volatile petroleum hydrocarbons found in a Bouchard 155 reference sample collected after the 1993 oil spill in the area, but are in a much degraded …

Extraction And Analysis Of Coral Reef Core Samples From Broward County, Florida., Anastasios Stathakopoulos

HCNSO Student Theses and Dissertations

The reefs off Broward County exist as three shore-parallel, sequentially deeper terraces named the "inner", "middle", and "outer" reefs and also a shallower, nearshore ridge complex. These structures span the continental coast of southeast Florida from Palm Beach County to southern Miami-Dade County and were characterized as relict, early Holocene shelf-edge and mid-shelf reefs along with limestone ridges. Presently, the reefs are colonized by a fauna characteristic of West Atlantic/Caribbean reef systems. Scleractinian coral cover is low except for a few dense patches of Acropora cervicornis, while Acropora palmata is absent except for a few individual living colonies.

Coral …

Satellite-Based Estimation Of Chlorophyll-Α Concentration In Turbid Productive Waters, Wesley Moses

School of Natural Resources: Dissertations, Theses, and Student Research

Inland, coastal, and estuarine waters, which are often turbid and biologically productive, play a crucial role in maintaining global bio-diversity and are of immense value to aquatic life as well as human-beings. Concentration of chlorophyll-a (chl-a) is a key indicator of the trophic status of these waters, which should be regularly monitored to ensure that their ecological balance is not disturbed. Remote sensing is a powerful tool for this.

Due to the optical complexity of turbid productive waters, standard algorithms that use blue and green reflectances are unreliable for estimating chl-a concentration. Algorithms based on red and near-infrared (NIR) reflectances …

Rainsford Island Shoreline Evolution Study (Rises), Christopher V. Maio

Graduate Masters Theses

RISES conducted a shoreline change study in order to accurately map, quantify, and predict trends in shoreline evolution on Rainsford Island occurring from 1890-2008. It employed geographic information systems (GIS) and analytical statistical techniques to identify coastal hazard zones vulnerable to coastal erosion, rising sea-levels, and storm surges. The 11-acre Rainsford Island, located in Boston Harbor, Massachusetts, consists of two eroded drumlins connected by a low-lying spit. Settled by Europeans in 1636, the Island was later used as the Harbor’s main quarantine station. Previous archeological surveys have identified numerous historically sensitive sites dating to before the Revolutionary War period, including …

Lsuhsc Facilities Daily Update: December 2009, Lsuhsc Property And Facilities Management

LSUHSC Facilities Daily Updates: 2009

LSUHSC Dailly Facilities Updates from December 2009. These updates describe damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

Lsuhsc Facilities Biweekly Update: December 2009, Lsuhsc Property And Facilities Management

LSUHSC Facilities Biweekly Updates: 2009

LSUHSC Facilities Biweekly Updates from December 4 and 18, 2009.

These updates describe damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

Functional Characterization Of Calcium Dependent Protein Kinase 32 From Arabidopsis, Rucha Karve

All Dissertations

Calcium-dependent protein kinases (CPKs) are major plant Ca2+ sensors, many of which have roles in plant stress responses. The Arabidopsis genome encodes 34 CPK isoforms. Here we report characterization of AtCPK32 gene function. Analysis of transgenic plants expressing pCPK32-GUS shows that CPK32 is highly expressed in roots, pollen and embryo, as well as leaf hydathodes, and the abscission zone of mature siliques. Real time RT-PCR and promoter expression patterns show that CPK32 is responsive to abiotic and biotic stresses. Plants treated with salt, ABA, osmotic stress (PEG), wounding, and flagellin 22 peptide show up-regulation of CPK32 upon these stress treatments. …

Nutrient Cycles And Marine Microbes In A Co2-Enriched Ocean, David A. Hutchins, Margaret R. Mulholland, Feixue Fu

OES Faculty Publications

The ocean carbon cycle is tightly linked with the cycles of the major nutrient elements nitrogen, phosphorus, and silicon. It is therefore likely that enrichment of the ocean with anthropogenic CO2 and attendant acidification will have large consequences for marine nutrient biogeochemistry, and for the microbes that mediate many key nutrient transformations. The best available evidence suggests that the nitrogen cycle may respond strongly to higher CO2 through increases in global N2 fixation and possibly denitrification, as well as potential decreases in nitrification. These trends could cause nitrification to become a nitrogen cycle "bottleneck," by increasing the flux of N2 …

A Fateful Year For Climate Change, William J. Antholis

Brookings Scholar Lecture Series

Since 1979, 20% of the polar ice cap has melted away. While the public is aware of climate change, the urgency to action is not there. Climate change is also an issue of national security, but enforcement of the the Kyoto and Copenhagen treaties is hampered.

Lower Tropospheric Temperature Variability Over The Usa: A Gis Approach, Souleymane Fall, Dev Niyogi, Gilbert L. Rochon

GIS Day

We use the high resolution North American Regional Analysis (NARR) dataset to build for the United States a Temperature Change Index (TCI) based on four contributing variables derived from the layer-averaged temperature and lapse rate of the 1000mb - 700mb layer (near-surface to 3000 meters) for the 1979-2008 period. The analysis uses Geographic Information Systems (GIS) methods to identify distinct regional patterns based on aggregate temperature trends and variability scores. The resulting index allows us to identify and compare regions that experience high (low) temperature trends and variability that are referred to as hot spots (cold spots). The upper Midwest …

Climate Change Economics 101, Adele C. Morris

Brookings Scholar Lecture Series

Outline of Talk:
- Climate change is a market failure
- Climate and energy facts
- Economically efficient policy design
- Economics of Domestic Legislation

Impact Of High Frequency Waves On The Ocean Altimeter Range Bias, Douglas C. Vandemark, Bertrand Chapron, T. Elfouhaily, J. W. Campbell

Ocean Process Analysis Laboratory

New aircraft observations are presented on the range determination error in satellite altimetry associated with ocean waves. Laser-based measurements of the cross correlation between the gravity wave slope and elevation are reported for the first time. These observations provide direct access to a long, O(10 m), gravity wave statistic central to nonlinear wave theory prediction of the altimeter sea state bias. Coincident Ka-band radar scattering data are used to estimate an electromagnetic (EM) range bias analogous to that in satellite altimetry. These data, along with ancillary wind and wave slope variance estimates, are used alongside existing theory to evaluate …

Observations Of Heterogeneous Reactions Between Asian Pollution And Mineral Dust Over The Eastern North Pacific During Intex-B, Cameron Mcnaughton, A D. Clarke, V Kapustin, Yohei Shinozuka, S G. Howell, B E. Anderson, E L. Winstead, Jack E. Dibb, Eric Scheuer, Ronald C. Cohen, Paul J. Wooldridge, A E. Perring, L Gregory Huey, S Kim, Jose L. Jimenez, E J. Dunlea, P F. Decarlo, Paul Wennberg, John D. Crounse, Andrew Weinheimer, F Flocke

Earth Sciences

In-situ airborne measurements of trace gases, aerosol size distributions, chemistry and optical properties were conducted over Mexico and the Eastern North Pacific during MILAGRO and INTEX-B. Heterogeneous reactions between secondary aerosol precursor gases and mineral dust lead to sequestration of sulfur, nitrogen and chlorine in the supermicrometer particulate size range.

Simultaneous measurements of aerosol size distributions and weak-acid soluble calcium result in an estimate of 11 wt% of CaCO3 for Asian dust. During transport across the North Pacific, ∼5ĝ€ "30% of the CaCO3 is converted to CaSO4 or Ca(NO 3)2 with an additional ∼4% consumed through reactions with HCl. The …