Oceanography and Atmospheric Sciences and Meteorology Commons^™

A Preliminary Investigation Of Research Collaboration Through Scientific Paper Co-Authorship In The Gulf Of Mexico, Juliet Vallejo, Evelyn Roozee, Dongkyu Kim, Andrew M. Song, Christopher A. Gabler, Jasper R. De Vries, Antonia Sohns, Gordon M. Hickey, Owen Temby

School of Earth, Environmental, & Marine Sciences Faculty Publications

It is well known that publications with collaborators from external institutions increase citations. This effect scales with spatial distance. There are also many barriers to long-distance collaborations, including linguistic differences, funding constraints, and the incremental costs of remote collaboration. This paper uses the Gulf of Mexico as a case study to examine long-distance research collaboration because it consists of three countries with diverse development levels and two prominent diplomatic languages, within a singular regional ecosystem of tremendous natural and economic value. This paper uses bibliometric network analysis to examine scientific research article co-authorship in the Gulf of Mexico from 2000 …

Satellite-Based Identification Of Mesoscale And Submesoscale Eddies And Fronts In The Gulf Of Mexico, Ethan Cruz

Theses and Dissertations

Mesoscale and submesoscale processes in the Gulf of Mexico (GoM) are fundamental in shaping the region’s physical and biogeochemical ocean dynamics. Advances in high-resolution satellite observations now allow detailed detection of submesoscale (< 25 km radius) and mesoscale eddies and ocean fronts, which drive heat, nutrient, and carbon fluxes. This dissertation integrates two complementary investigations: (1) a comparison of eddy-tracking algorithms: Contour Tracing (CT) and Temperature Thresholding (TT), applied to Optimum Interpolation Sea Surface Temperature (OISST, 1/4°) and Operational Sea Surface Temperature and Ice Analysis (OSTIA, 1/20°) products; and (2) a comparative evaluation of three ocean front detection algorithms: Canny Edge Detection (Canny), the Cayula–Cornillon Algorithm (CCA), and the Belkin–O’Reilly Algorithm (BOA), across multiple satellite-derived parameters, including sea surface temperature (SST), sea surface salinity (SSS), chlorophyll-a (Chl-a), and altimetry-derived absolute dynamic topography (ADT). The eddy-tracking analysis shows that the higher-resolution OSTIA consistently detected more eddies than OISST, with TT performing best during winter when SST gradients were strongest. The front detection analysis, incorporating datasets from the Surface Water and Ocean Topography (SWOT) and Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) missions, was evaluated under diverse conditions, including flood and drought periods, Loop Current phase changes, and extreme weather events. A machine learning–based Gaussian Mixture Modeling (GMM) approach was also developed, providing a novel framework for dynamic front detection. By benchmarking traditional and machine learning methods, this integrated study identifies optimal algorithm–dataset combinations for resolving submesoscale and mesoscale features in the GoM, with applicability to other regions.

Data For Research Collaboration And Co-Authorship In The Gulf Of Mexico, 2000–2018, Owen Temby, Dongkyu Kim, Juliet Vallejo

Datasets

This dataset documents research collaboration and co-authorship among organizations engaged in environmental science in the Gulf of Mexico from 2000 to 2018. The data were compiled through bibliometric analysis of scientific articles, with each record containing publication-level and author affiliation information, as well as institutional and country codes. The dataset provides the basis for network analysis of collaborative patterns among institutions in the United States, Mexico, and Cuba. Variable definitions and data structure are described in the accompanying README file.

Subtropical Estuarine Ecosystems Display Both Long-Term Stability And Change, Garrett L. Miller

USF Tampa Graduate Theses and Dissertations

Subtropical estuaries often support abundant and diverse faunal assemblages, but it is unclear how these productive ecosystems are responding to climate change. In the eastern Gulf of Mexico, estuarine faunal assemblages have been sampled for decades as part of a fisheries-independent long-term monitoring program. I assessed trends in submerged aquatic vegetation, water temperature, and the abundance, richness, and structure of faunal assemblages over more than two decades in four estuarine systems using this dataset. I used both univariate and multivariate analyses to quantify and describe the dynamics of these habitat and faunal variables. Further, I separated my analyses for summer …

Exploring The Dynamics Of September Fish Spawning On The West Florida Shelf Through The Dna Barcoding Of Fish Eggs, Keith G. Keel

USF Tampa Graduate Theses and Dissertations

Identifying spawning areas for economically and ecologically important fishes is critical for fisheries conservation and ecosystem-based management. Additionally, monitoring the spawning dynamics of fishes is increasingly important as temperatures and oceanic conditions change. I used genetic barcoding to identify fish eggs collected across the West Florida Shelf (WFS) during September of 2013, 2014, and 2019. Fish eggs were collected on National Oceanic and Atmospheric Administration (NOAA) Southeast Area Monitoring and Assessment Program (SEAMAP) ichthyoplankton cruises using a Continuous Underway Fish Egg Sampler (CUFES). Analysis of 4,400 fish eggs from the three years resulted in the identification of 83 unique species …

4500-Year Paleohurricane Record From The Western Gulf Of Mexico, Coastal Central Tx, Usa, Sarah B. Monica, Davin J. Wallace, Elizabeth J. Wallace, Xiaojing Du, Sylvia G. Dee, John B. Anderson

OES Faculty Publications

Texas receives the second-highest number of tropical cyclone (TC) landfalls per year in the United States. At present, long-term TC projections from climate models remain uncertain due to the short and biased nature of Atlantic TC observations. Sediment archives of past storms can help extend the observational record of TC strikes over the past few millennia. When a TC makes landfall along the central Texas coast, coastal downwelling channels and storm currents transport and deposit coarse sediment to a zone of rapid accumulation along the shelf, known as the Texas Mud Blanket (TMB). This “backwash” process results in expansive storm …

Prevalence, Faunal Composition, And Vertical Distribution Of Bioluminescence In The Pelagic Gulf Of Mexico: Fishes, Crustaceans, Cephalopods And Gelatinous Megaplankton, Devynne M. Brown

All HCAS Student Capstones, Theses, and Dissertations

Bioluminescence is the phenomenon of light emission by living organisms. It occurs through a chemical reaction within an organism and serves various purposes. The diversity of bioluminescent capabilities and occurrence in unrelated taxa suggest that bioluminescence has evolved independently numerous times amongst taxa thriving in certain environments. One such environment is the deep ocean, where little to no sunlight penetrates the water column, specifically in the mesopelagic (200-1000 m depth) and bathypelagic (> 1000 m) zones. The mesopelagic and bathypelagic zones have been extensively sampled and well documented in the Gulf of Mexico (GoM), one of the few places globally …

Tropical Cyclone And Ocean-Atmosphere Interactions In The Gulf Of Mexico, Emily Nichole Eley

Theses and Dissertations

The Gulf of Mexico (GoM) is historically a favorable region for the formation, maintenance and intensification of tropical cyclones that frequently evolve into powerful hurricanes. These natural disasters threaten the basin’s innate habitat and wildlife diversity, and the expansive coastal economies and communities. The dominant ocean circulation feature in the GoM is the Loop Current System (LCS) which includes the Loop Current (LC) and its associated mesoscale eddy field. The LC originates at the Yucatán Channel, loops anticyclonically into the basin, and ends at the Florida Straits; further it produces both anticyclonic and cyclonic eddies. The existence of the LCS …

Fish Community Analysis Using Multidirectional Rov Video Surveys In The Northwestern Gulf Of Mexico, Keegan J. Angerer

Theses and Dissertations

In this study, ROV surveys with multidirectional video were used to analyze the fish communities associated with artificial reef patches in the Rio Grande Valley artificial reef 13.7 km off the coast of South Padre Island, TX. Nine configurations of reef patches consisting of varying combinations and densities of concrete pyramid and low-profile modules were surveyed. The highest species diversity was found at patches with large deployments of both pyramids and low-profile modules. Total Red Snapper Lutjanus campechanus abundance did not differ between configurations, but the highest abundances of juvenile Red Snapper were found at configurations with one pyramid and …

Growth And Reproduction In Gulf Of Mexico Black Corals (Antipatharians) In Field And Laboratory Studies, Victoria E. Salinas

Theses and Dissertations

Black corals provide an important ecosystem of marine life and are found throughout all the oceans of the world at depths between 2 and 8,600 m. However, little is understood about their life history and the factors that control the distribution of black corals, particularly in the Gulf of Mexico (GoM). Given the impacts of the Deepwater Horizon oil spill on soft corals (e.g., black corals and octocorals) in the GoM, studies of their growth and reproductive biology in both natural and aquaculture environments are crucial for restoration efforts. The objectives of this study were to examine reproductive processes, compare …

Network Analysis Of Scientific Research In The Gulf Of Mexico, Juliet S. Vallejo

Theses and Dissertations

The Gulf of Mexico ecosystem represents a significant management challenge in its 3,423-mile coastline and transnational regulatory setting, along five states from the United States, six states from Mexico, and Cuba which borders the southeastern quadrant. Providing various resources to the regional economies, the continued success of these resources depends on the collaboration among transnational participants in bringing together complementary skills and multidisciplinary approaches to producing, circulating, and utilizing scientific knowledge. Using bibliometric analysis of Gulf of Mexico-related published research over 18 years from 2000 to 2018 allows for identifying organizations, their connections, and trends in the production of scientific …

Ocean Eddies And Frontal Zones In The Gulf Of Mexico And Straits Of Florida, Yingjun Zhang

USF Tampa Graduate Theses and Dissertations

Ocean eddies and fronts in the Gulf of Mexico (GoM) and the Straits of Florida (SoF) play important roles in ocean physics, biology, and ecology. These two ubiquitous physical features have been studied worldwide for decades, yet many questions remain unanswered or poorly studied for the GoM and SoF. This study aims to improve the understanding of ocean eddies and frontal zones in the GoM and SoF using satellite remote sensing, in situ observations and model outputs, as well as state-of-the-art algorithms, with the following objectives: 1) analyze the three-dimensional (3-D) statistical characteristics and thermohaline structure of mesoscale eddies in …

Zooplankton Biodiversity In The Northeast Gulf Of Mexico And On The West Florida Shelf From 2005 - 2014, Megan Ferguson

USF Tampa Graduate Theses and Dissertations

Zooplankton abundance and biodiversity was measured in the northeast Gulf of Mexico (NEGoM) and on the West Florida Shelf. Bongo net samples were collected between May 2005 to September 2009 through the SEAMAP program, and between July 2010 to August 2014 through the C-IMAGE program. Calanoid copepods were the most abundant zooplankton group in most of the samples collected, but ostracods, larvaceans, and chaetognaths were also abundant. Shannon and Inverse Simpson indices were calculated for all zooplankton samples and generally showed similar trends, but only Shannon indices were used for statistical analyses. In the winter and spring there were significant …

Population Genomic Dynamics Of Mesopelagic Lanternfishes Diaphus Dumerilii, Lepidophanes Guentheri, And Ceratoscopelus Warmingii (Family: Myctophidae) In The Gulf Of Mexico, Andrea Bernard, Kimberly A. Finnegan, Tracey Sutton, Ron Eytan, Max Weber, Mahmood Shivji

Marine & Environmental Sciences Faculty Articles

Assessing the impacts of the Deepwater Horizon oil spill (DWHOS) on deep-sea fish assemblages of the Gulf of Mexico (GOM) has been hindered by an absence of baseline (pre-spill) data concerning the population genetic dynamics of these fishes. The lanternfishes (Myctophidae) are a speciose, yet understudied, taxonomic group, that comprise a significant portion of the global deep-sea biomass, making them integral members of meso- and bathy-pelagic food webs. Herein, we used a genomic approach (double digest restriction site associated DNA sequencing) to investigate the temporal genetic dynamics of three species of lanternfishes within the northern GOM in the region of …

Mid-Breton Sediment Diversion (Mbrsd) Assessment – Final Report, Jerry D. Wiggert, Brandy N. Armstrong, M. Kemal Cambazoglu, Sandeep Kalathupurath Kuttan

Faculty Publications

The purpose of this project is to provide managers at the Mississippi Department of Marine Resources (MDMR) with the scientific information needed to accurately address public concerns regarding the potential effects of the Louisiana Coastal Master Plan / Coastal Protection and Restoration Authority (CPRA) Mid-Breton Sediment Diversion (MBrSD) on the jurisdictional waters and resources of Mississippi. The stated design purpose of the MBrSD is to reconnect and re-establish the deltaic sediment deposition process between the Mississippi River and the Breton Sound Basin through a diversion that will deliver up to 75,000 cfs of sediment-laden freshwater. The report presented herein provides …

Small-Scale Resuspension And Redistribution Of Surface Sediments In The Northeast Gulf Of Mexico, Austin Harris

Master's Theses

Following the release of ~4.9 million barrels of oil into the Gulf of Mexico from the Macondo wellhead, a vast area of the seafloor contained recently deposited marine sediments contaminated by the oil spill. The initial deposition of these contaminated marine sediments was likely not the end of the journey for the particles. Downslope gravitational processes and events of increased current speed in the deep ocean setting can result in recently deposited sediments to resuspend and be moved laterally with the current flow, increasing the area effected by the oil spill. Erosion experiments performed in a closed-loop resuspension flume were …

Microplankton Dynamics In The River-Dominated Mississippi Bight, Adam D. Boyette

Dissertations

The Mississippi Bight (MSB) is a river-dominated continental margin influenced by multiple large river systems, including the Mississippi River, Alabama and Tombigbee rivers via Mobile Bay, and numerous smaller rivers, creeks, and bayous. This is part of a biologically-rich ecosystem that supports the second largest fishery industry by volume in the United States. Despite our understanding of the linkages between primary production with higher trophic levels, there remains limited studies quantifying these trophic interactions in this system. Microplankton (µm) community dynamics and trophic connectivity between primary producers and heterotrophic protists represent a critical nexus influencing overall biological productivity in this …

Assessing The Real-Time Lagrangian Predictability Of The Operational Navy Coastal Ocean Model In The Gulf Of Mexico, Lea Kristen Locke

Dissertations

This study quantitatively assesses the drift predictive skill of Fleet Numerical Meteorology and Oceanography Center’s (FNMOC’s) operational ocean models which are used to support a wide range of military and civilian applications. Overall, the findings of this work support the recommendation of spatial filtering for regional-scale ocean model velocity fields used in deep-water drift applications. In conjunction with filtering, the use of a pure particle drift algorithm is suggested for short-term forecasts and a drift algorithm including a sub-grid scale, random flight, parameterization for predictions requiring extended forecast predictions.

Drift prediction skill is quantified through metrics of in-cloud percentage, distance …

Elevating Dissolved Oxygen—Reflections On Developing And Using Long-Term Data, Nancy N. Rabalais

Gulf and Caribbean Research

This prospectus took me about as long to generate as my 36—year record of working on the issue of northern Gulf of Mexico (nGOM) oxygen deficiency, or so I felt. There was so much to cover, but I focused on the issue of hypoxia on the Louisiana continental shelf from the early 1980s to present and my participation in the research and outreach. Not that I was ignoring other aspects of my academic research career (e.g., stone crab populations and their differences in physiology and larval development along the nGOM coast; settlement of crab megalopae, especially blue crabs, on artificial …

Monitoring 2019 Bonnet Carré Spillway Impacts - Final Report, J. Read Hendon, Jerry D. Wiggert, Jill Hendon

Faculty Publications

Due to the multiple and extended openings of the Bonnet Carré Spillway in 2019, the University of Southern Mississippi (USM) was tasked by the Mississippi Department of Marine Resources to conduct ecological sampling in the Mississippi Sound and adjacent waters. in an effort to better understand the impacts of the extensive freshwater diversion of Bonnet Carré Spillway operations on Mississippi's coastal and marine resources. The period of performance for this project was June 1, 2019, to August 31, 2019. This technical report summarizes the three months of weekly surveys and analyses, over June - August 2019, conducted by the University …

Trophic Structure And Sources Of Variation Influencing The Stable Isotope Signatures Of Meso- And Bathypelagic Micronekton Fishes, Travis M. Richards, Tracey Sutton, R. J.David Wells

Marine & Environmental Sciences Faculty Articles

To better understand spatiotemporal variation in the trophic structure of deep-pelagic species, we examined the isotope values of particulate organic matter (POM) (isotopic baseline) and seven deep-pelagic fishes with similar diet compositions but contrasting vertical distributions across mesoscale features in the Gulf of Mexico using stable isotope and amino acid compound-specific isotope analyses. Species examined included four migratory (Benthosema suborbitale, Lepidophanes guentheri, Melamphaes simus, Sigmops elongatus) and three non-migratory zooplanktivorous fishes (Argyropelecus hemigymnus, Cyclothone obscura, Sternoptyx pseudobscura). Isotopic values of POM increased with depth, with meso- and bathypelagic samples characterized by higher δ C and δ N values relative to …

First Insights Into The Vertical Habitat Use Of The Whitespotted Eagle Ray Aetobatus Narinari Revealed By Pop‐Up Satellite Archival Tags, L. R. Brewster, B. V. Cahill, M. N. Burton, C. Dougan, J. S. Herr, L. Issac Norton, S. A. Mcguire, M. Pico, E. Urban-Gedamke, K. Bassos-Hull, J. P. Tyminski, R. E. Hueter, Bradley M. Wetherbee, Mahmood S. Shivji, N. Burnie, M. J. Ajemian

Marine & Environmental Sciences Faculty Articles

The whitespotted eagle ray Aetobatus narinari is a tropical to warm‐temperate benthopelagic batoid that ranges widely throughout the western Atlantic Ocean. Despite conservation concerns for the species, its vertical habitat use and diving behaviour remain unknown. Patterns and drivers in depth distribution of A. narinari were investigated at two separate locations—western North Atlantic (Islands of Bermuda) and Eastern Gulf of Mexico (Sarasota, Florida, USA). Between 2010 and 2014, seven pop‐up satellite archival tags (PSATs) were attached to A. narinari using three methods: a through‐tail suture; external tail‐band; and through‐wing attachment. Retention time ranged from 0–180 days, with tags attached via …

Bonnet Carré Spillway Freshwater Transport And Corresponding Biochemical Properties In The Mississippi Bight, Sabrina M. Parra, Virginie Sanial, Adam D. Boyette, M. Kemal Cambazoglu, Inia M. Soto, Adam T. Greer, Luciano M. Chiaverano, Angie Hoover, Michael S. Dinniman

CCPO Publications

Large freshwater pulses to coastal ecosystems change local hydrologic regimes and alter biogeochemical processes. The Mississippi Bight coastal ecosystem, located in the northern Gulf of Mexico shelf, is influenced by extensive freshwater inputs: the Mississippi River (MSR) and several smaller rivers to the east. Under river flood conditions, MSR waters flow through the Bonnet Carré Spillway (BCS) to relieve pressure on levees in New Orleans, Louisiana. In 2015, mild wintertime temperatures and heavy rainfall throughout the MSR watershed led to extreme flooding and prompted an unusually early BCS opening on January 10, 2016 for 23 days. This study examines the …

Taxonomic Richness And Diversity Of Larval Fish Assemblages In The Oceanic Gulf Of Mexico: Links To Oceanographic Conditions, Corinne R. Meinert, Kimberly Clausen-Sparks, Maëlle Cornic, Tracey Sutton, Jay R. Rooker

Marine & Environmental Sciences Faculty Articles

Biodiversity enhances the productivity and stability of marine ecosystems and provides important ecosystem services. The aim of this study was to characterize larval fish assemblages in pelagic waters of the northern Gulf of Mexico (NGoM) and identify oceanographic conditions associated with areas of increased taxonomic richness (T ) and Shannon diversity (H’). Summer ichthyoplankton surveys were conducted in the NGoM in 2015 and 2016 using neuston net (surface layer; upper 1 m) and oblique bongo net (mixed layer; 0–100 m) tows. Over 17,000 fish larvae were collected over the two-year study, and 99 families of fish larvae were present. Catch …

Hiding In Plain Sight: Elopomorph Larvae Are Important Contributors To Fish Biodiversity In A Low-Latitude Oceanic Ecosystem, Jon A. Moore, Dante Fenolio, April Coan, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Leptocephalus larvae of elopomorph fishes are a cryptic component of fish diversity in nearshore and oceanic habitats. However, identifying those leptocephali can be important in illuminating species richness in a region. Since the Deepwater Horizon oil spill in 2010, sampling of offshore fishes in the epi-, meso-, and upper bathypelagic depth strata of the northern Gulf of Mexico resulted in 8989 identifiable specimens of leptocephalus larvae or transforming juveniles, in 118 taxa representing 83 recognized and established species and an additional 35 distinctive leptocephalus morphotypes not yet linked to a known described species. Leptocephali account for ∼13% of the total …

Pelagic Habitat Partitioning Of Late-Larval And Juvenile Tunas In The Oceanic Gulf Of Mexico, Nina Pruzinsky, Rosanna Milligan, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Tunas are ecologically important in pelagic ecosystems, but due to their high economic value, large-bodied species are overfished. Declines in fishery landings of large-bodied tuna species in the Gulf of Mexico (GoM) are expected to increase fishing pressures on unmanaged, small-bodied tuna species, whose life history traits are less known. While predicting spawning stocks and recruitment success typically focuses on estimates of larval abundances, juveniles may provide a better estimate of future adult stock sizes, as they are more likely to survive to adulthood because mortality rates scale inversely with body size. However, distributional studies on juveniles are rare, leading …

Phytoplankton And Carbon Dynamics In The Estuarine-Coastal Waters Of The Northern Gulf Of Mexico From Field Data And Ocean Color Remote Sensing, Bingqing Liu

LSU Doctoral Dissertations

In this study, phytoplankton community and carbon dynamics were examined in the optically complex estuarine-coastal regions of the northern Gulf of Mexico (nGOM) from field and satellite ocean color observations. As part of this study, bio-optical ocean color algorithms for i) dissolved organic carbon (DOC), ii) phytoplankton pigment composition, iii) adaptive estimation of Chl a and iv) phytoplankton size fractions were developed to facilitate the study of biogeochemical cycling in the nGOM.

The phytoplankton based algorithms were applied to Sentinel 3A/B-OLCI oean color data to assess phytoplankton community dynamics to extreme river discharge conditions as well as hurricanes in the …

Simulating Wave Dynamics In The Northern Gulf Of Mexico And Barataria Pass, Azadeh Razavi Arab

LSU Master's Theses

The coastal wetlands of Louisiana constitute ~40% of the wetlands in the United States. However, it suffers from 80% of the wetland losses in the whole country. In shallow coastal and estuarine environments, bed shear stresses related to wind waves contributes substantially to the edge erosion in the northern Gulf of Mexico (NGoM). Therefore, wave simulations in shallow estuarine areas are of great importance.

There are several challenges in simulating waves nearshore, especially over the shallow and nearly horizontal sea beds typical of the NGoM continental shelf and adjacent complex geometry estuaries: determination of the appropriate wind forcing dataset to …

The Vertical And Horizontal Distribution Of Deep-Sea Crustaceans In The Order Euphausiacea In The Vicinity Of The Deepwater Horizon Oil Spill, Tamara Frank, Charles Douglas Fine, Eric A. Burdett, April Cook, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The vertical and horizontal distributions of Euphausiacea in the northern Gulf of Mexico (GOM), including the location of the Deepwater Horizon oil spill, were analyzed from 340 trawl samples collected between April and June 2011. This study is the first comprehensive survey of euphausiid distributions from depths deeper than 1000 m in the GOM and includes stratified sampling from five discrete depth ranges (0–200 m, 200–600 m, 600–1000 m, 1000–1200 m, and 1200–1500 m), and expands the depth ranges of 30 species. In addition, this study demonstrates significantly higher abundance and biomass of the euphausiid assemblage from slope vs. offshore …

Gulf Coast Marine Laboratories Past, Present And Future, Donald F. Boesch

Gulf and Caribbean Research

I spent my nearly 50—year career in marine science working at marine laboratories, most of that as a chief executive officer. So, it is appropriate that my reflections are about marine laboratories, rather than my own science. After relating my career course, I turn my attention to the history and development of marine laboratories along the U.S. coast of the Gulf of Mexico (GOM). Surprisingly, the region’s first laboratory was actually constructed in 1903 at Cameron, LA, but operated less than a decade before closing. It was not until after World War II that the university—affiliated marine laboratories of today …