Oceanography and Atmospheric Sciences and Meteorology Commons^™

Estimating Age From Recapture Data: Integrating Incremental Growth Measures With Ancillary Data To Infer Age-At-Length, Mitchell J. Eaton, William A. Link

United States Geological Survey: Staff Publications

Estimating the age of individuals in wild populations can be of fundamental importance for answering ecological questions, modeling population demographics, and managing exploited or threatened species. Significant effort has been devoted to determining age through the use of growth annuli, secondary physical characteristics related to age, and growth models. Many species, however, either do not exhibit physical characteristics useful for independent age validation or are too rare to justify sacrificing a large number of individuals to establish the relationship between size and age. Length-at-age models are well represented in the fisheries and other wildlife management literature. Many of these models …

Spatial Patch Occupancy Patterns Of The Lower Keys Marsh Rabbit, Mitchell J. Eaton, Phillip T. Hughes, James D. Nichols, Anne Morkill, Chad Anderson

United States Geological Survey: Staff Publications

Reliable estimates of presence or absence of a species can provide substantial information on management questions related to distribution and habitat use but should incorporate the probability of detection to reduce bias. We surveyed for the endangered Lower Keys marsh rabbit (Sylvilagus palustris hefneri) in habitat patches on 5 Florida Key islands, USA, to estimate occupancy and detection probabilities. We derived detection probabilities using spatial replication of plots and evaluated hypotheses that patch location (coastal or interior) and patch size influence occupancy and detection. Results demonstrate that detection probability, given rabbits were present, was <0.5 and suggest that naı¨ve estimates (i.e., estimates without consideration of imperfect detection) of patch occupancy are negatively biased. We found that patch size and location influenced probability of occupancy but not detection. Our findings will be used by Refuge managers to evaluate population trends of Lower Keys marsh rabbits from historical data and to guide management decisions for species recovery. The sampling and analytical methods we used may be useful for researchers and managers of other endangered lagomorphs and cryptic or fossorial animals occupying diverse habitats.

Rapid Wetland Expansion During European Settlement And Its Implication For Marsh Survival Under Modern Sediment Delivery Rates, Matthew L. Kirwan, A. Brad Murray, Jeffrey P. Donnelly, D. Reide Corbett

United States Geological Survey: Staff Publications

Fluctuations in sea-level rise rates are thought to dominate the formation and evolution of coastal wetlands. Here we demonstrate a contrasting scenario in which land-use–related changes in sediment delivery rates drive the formation of expansive marshland, and vegetation feedbacks maintain their morphology despite recent sediment supply reduction. Stratigraphic analysis and radiocarbon dating in the Plum Island Estuary (Massachusetts, United States) suggest that salt marshes expanded rapidly during the eighteenth and nineteenth centuries due to increased rates of sediment delivery following deforestation associated with European settlement. Numerical modeling coupled with the stratigraphic observations suggests that existing marshland could survive, but not …

Adaptive Resource Management And The Value Of Information, Byron K. Williams, Mitchell J. Eaton, David R. Breininger

United States Geological Survey: Staff Publications

The value of information is a general and broadly applicable concept that has been used for several decades to aid in making decisions in the face of uncertainty. Yet there are relatively few examples of its use in ecology and natural resources management, and almost none that are framed in terms of the future impacts of management decisions. In this paper we discuss the value of information in a context of adaptive management, in which actions are taken sequentially over a timeframe and both future resource conditions and residual uncertainties about resource responses are taken into account. Our objective is …

A Loess–Paleosol Record Of Climate And Glacial History Over The Past Two Glacial–Interglacial Cycles (~150 Ka), Southern Jackson Hole, Wyoming, Kenneth L. Pierce, Daniel R. Muhs, Maynard A. Fosberg, Shannon A. Mahan, Joseph G. Rosenbaum, Joseph M. Licciardi, Milan J. Pavich

United States Geological Survey: Staff Publications

Loess accumulated on a Bull Lake outwash terrace of Marine Oxygen Isotope Stage 6 (MIS 6) age in southern Jackson Hole, Wyoming. The 9 m section displays eight intervals of loess deposition (Loess 1 to Loess 8, oldest), each followed by soil development. Our age-depth model is constrained by thermoluminescence, meteoric ¹⁰Be accumulation in soils, and cosmogenic ¹⁰Be surface exposure ages. We use particle size, geochemical, mineral-magnetic, and clay mineralogical data to interpret loess sources and pedogenesis. Deposition of MIS 6 loess was followed by a tripartite soil/thin loess complex (Soils 8, 7, and 6) apparently re!ecting the …

Classroom Manipulative To Engage Students In Mathematical Modeling Of Disease Spread: 1 + 1 = Achoo!, H. Gaff, M. Lyons, G. Watson

Biological Sciences Faculty Publications

Infectious diseases ranging from the common cold to cholera affect our society physically, emotionally, ecologically, and economically. Yet despite their importance and impact, there remains a lack of effective teaching materials for epidemiology and disease ecology in K-12, undergraduate, and graduate curricula [2]. To address this deficit, we've developed a classroom lesson with three instructional goals: (1) Familiarize students on basic concepts of infectious disease ecology; (2) Introduce students to a classic compartmental model and its applications in epidemiology; (3) Demonstrate the application and importance of mathematical modeling as a tool in biology. The instructional strategy uses a game-based mathematical …

Behavior Constrains The Dispersal Of Long-Lived Spiny Lobster Larvae, Mark J. Butler Iv, Claire B. Paris, Jason S. Goldstein, Hirokazu Matsuda, Robert K. Cowen

Biological Sciences Faculty Publications

Behavior such as ontogenetic vertical migration (OVM) limits the transport of marine larvae with short pelagic larval durations (PLDs), but its effect on the supposed long-distance dispersal of larvae with long PLDs is unknown. We conducted laboratory tests of ontogenetic change in larval phototaxis and examined size-specific patterns of larval distribution in the plankton to characterize OVM in the Caribbean spiny lobster Panulirus argus during its long (6 mo) PLD. We then used a coupled biophysical model to explore the consequences of OVM and hydrodynamics on larval P. argus dispersal in the Caribbean Sea. Larvae reared in the laboratory were …

The Spatial Distribution Of Solar Radiation Under A Melting Arctic Sea Ice Cover, Karen E. Frey, Donald K. Perovich, Bonnie Light

Geography

The sea ice cover of the Chukchi and Beaufort Seas is currently undergoing a fundamental shift from multiyear ice to first-year ice. Field observations of sea ice physical and optical properties were collected in this region during June-July 2010, revealing unexpectedly complex spatial distributions of solar radiation under the melt-season ice cover. Based on our optical measurements of first-year ice, we found the under-ice light field in the upper ocean to be spatially heterogeneous and dependent on wavelength, ice thickness, and the areal and geometric distribution of melt ponded and bare ice surfaces. Much of the observed complexity in radiation …

A Synthesis Of The Long-Term Paleoclimatic Evolution Of The Arctic, Matthew O'Regan, Christopher J. Williams, Karen E. Frey, Martin Jakobsson

Geography

Since the Arctic Ocean began forming in the Early Cretaceous 112-140 million years ago, the Arctic region has undergone profound oceanographic and paleoclimatic changes. It has evolved from a warm epicontinental sea to its modern state as a cold isolated ocean with extensive perennial sea ice cover. Our understanding of the long-term paleoclimate evolution of the Arctic remains fragmentary but has advanced dramatically in the past decade through analysis of new marine and terrestrial records, supplemented by important insights from paleoclimate models. Improved understanding of how these observations fit into the long-term evolution of the global climate system requires additional …

The Carbon Footprint Associated With Water Management Policy Options In The Las Vegas Valley, Nevada, Eleeja Shrestha, Sajjad Ahmad, Walter Johnson, Jacimaria R. Batista

Civil and Environmental Engineering and Construction Faculty Research

A system dynamics model was developed to estimate the carbon dioxide (CO₂) emissions associated with conveyance of water from the water source to the distribution laterals of the Las Vegas Valley. In addition, the impact of several water management policies, including water conservation, reuse, and population growth rate change was evaluated. The results show that, at present, nearly 0.53 million metric tons of CO₂ emissions per year are released due to energy use for water conveyance in distribution laterals of the Valley from Lake Mead, located 32.2 km (20 miles) southeast of the Las Vegas at an …

2011-2012 Unlv Mcnair Journal, Cyndy Anang, Sajar Camara, Pamela Cornejo, Carla Antonieta Farcello, Ilse Anahi Garcia, Natiera Magnuson, William L. Mccurdy, Lorena Munoz, Maxym V. Myroshnychenko, Ricardo Rios, Theodore Waldeck, Barbara Wallen, Ana Zuniga, Brenda M. Aguilar, Tiffany Alexandra Alvarez, Daniel N. Erosa, Paige C. Espinosa, Carla Antonieta Farcello, Julienne Jochel Paraiso, Nathaniel Derek Phillipps, Carmen Vallin, Jacent N. Wamala, Ernesto Zamora-Ramos

McNair Journal

Journal articles based on research conducted by undergraduate students in the McNair Scholars Program

Table of Contents

Biography of Dr. Ronald E. McNair

Statements:

Dr. Neal J. Smatresk, UNLV President

Dr. Juanita P. Fain, Vice President of Student Affairs

Dr. William W. Sullivan, Associate Vice President for Retention and Outreach

Mr. Keith Rogers, Deputy Executive Director of the Center for Academic Enrichment and Outreach

McNair Scholars Institute Staff

Lsuhsc Facilities Biweekly Update: January 2011, Lsuhsc Property And Facilities Management

LSUHSC Facilities Biweekly Updates: 2011

LSUHSC Facilities Biweekly Updates from January 14 and 28, 2011.

These updates describe damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

Lsuhsc Facilities Daily Updates: January 2011, Lsuhsc Property And Facilities Management

LSUHSC Facilities Daily Updates: 2011

LSUHSC Facilities Daily Updates from January 2011.

These updates describe damage and a timeline of repairs at the LSU Health Sciences Center - New Orleans campus due to Hurricane Katrina which made landfall August 29, 2005.

The Integrated Wrf/Urban Modeling System: Development, Evaluation, And Applications To Urban Environmental Problems, Fei Chen, Hiroyuki Kusaka, Robert Bornstein, Jason Ching, C.S.B. Grimmond, Susanne Grossman-Clarke, Thomas Loridan, Kevin W. Manning, Alberto Martilli, Shiguang Miao, David J. Sailor, Francisco P. Salamanca, Haider Taha, Mukul Tewari, Xuemei Wang, Andrzej A. Wyszogrodzki, Chaolin Zhang

Mechanical and Materials Engineering Faculty Publications and Presentations

To bridge the gaps between traditional mesoscale modeling and microscale modeling, the National Center for Atmospheric Research (NCAR), in collaboration with other agencies and research groups, has developed an integrated urban modeling system coupled to the Weather Research and Forecasting (WRF) model as a community tool to address urban environmental issues. The core of this WRF/urban modeling system consists of: 1) three methods with different degrees of freedom to parameterize urban surface processes, ranging from a simple bulk parameterization to a sophisticated multi-layer urban canopy model with an indoor outdoor exchange sub-model that directly interacts with the atmospheric boundary layer, …

Foraminiferal Assemblages On Sediment And Reef Rubble At Conch Reef, Florida Usa, Christy Michelle Stephenson

USF Tampa Graduate Theses and Dissertations

Benthic foraminiferal assemblages are widely used to interpret responses of the benthic communities to environmental stresses. This study compares epibiotic foraminiferal assemblages, collected from reef rubble, with those from reef sediments. The study site, Conch Reef, is the site of the Aquarius Underwater Habitat research facility and includes protected areas used only for scientific studies. Although a number of studies have enumerated foraminiferal taxa from the Florida reef tract, no projects have focused on the assemblages that occur at Conch Reef.

Sediment and reef rubbles samples were collected via SCUBA from a depth range of 13 to 26 m during …

Dynamics Of Stony Coral Assemblages On Patch Reefs Of The Upper Florida Reef Tract, Including Biscayne National Park, Amy Wallace

USF Tampa Graduate Theses and Dissertations

The patch reefs located in Biscayne National Park (BNP) are some of the most northern reefs of the Florida reef system. The focus of my study is seven patch reefs that were first surveyed annually between 1977 and 1981, revealing 8% - 28% cover by scleractinian corals. An assessment of BNP patch reefs completed in 2000 reported that coral cover had decreased to approximately 0.4% - 10%. The once dominant species in the Florida reef tract, Acropora palmata and A. cervicornis, have rapidly declined over time and were not found in any transects during the 2000 survey.

This study is …

Assessment Of Fertility Potential In Bottlenose Dolphins (Tursiops Truncatus): An Elisa-Based Biomarker Analysis, Leslie Schwierzke Wade

USF Tampa Graduate Theses and Dissertations

As apex predators in coastal systems, bottlenose dolphins (Tursiops truncatus) are susceptible to persistent organic pollutant (POP) accumulation and retention over time, which has prompted continued interest in understanding the extent to which contaminant body burdens or other stressors are sufficient to cause adverse sublethal effects on energetic fitness, immune function, or reproduction. Increasing our knowledge of reproductive endocrinology in bottlenose dolphins may provide insight into changes in reproductive rates, thereby expanding the capacity to assess conservation status. This study used the Enzyme-Linked ImmunoSorbent Assay (ELISA) technique to examine peptide fertility hormones [inhibin A, inhibin B and anti-Müllerian …

Sex And The Seas: Gene Transfer Agents, Elizabeth Young

USF Tampa Graduate Theses and Dissertations

Gene Transfer Agents (GTAs) are phage-like pthesiss that are produced by many alpha proteobacteria in late stationary growth phase and are capable of transferring chromosomal genes (termed "constitutive transduction"). Examination of alpha proteobacterial genomic sequences indicated widespread occurrence of GTA-like elements. The goal of this study was to investigate gene transfer potential of GTAs of marine alpha proteobacteria in culture as well as in natural marine environments. Another goal was to determine the potential of bacterial symbionts from zooxanthellae and coral to genetically transfer beneficial properties between symbionts. Ruegeria mobilis (ID 45A6) was isolated from cultures of the coral endosymbiotic …

Potential Habitat Of Acropora Spp. On Florida Reefs, Katherine Wirt

USF Tampa Graduate Theses and Dissertations

Elkhorn and Staghorn corals (Acropora palmata, A. cervicornis) were listed as threatened species under the Endangered Species Act (ESA) in 2005. The threatened status of these species is unprecedented given the vital role they historically played as major constructors of western Atlantic and Caribbean coral reefs. The goal of my study was to evaluate the current extent of habitat of the two species using a database of reported in situ observations. From these observations, potential habitat maps were produced based on benthic substrata and depth parameters throughout the Florida reef tract using GIS software. Locations of 99% of …

Observed Change In Sahel Rainfall, Circulations, African Easterly Waves, And Atlantic Hurricanes Since 1979, Shih-Yu (Simon) Wang, Robert R. Gillies

Plants, Soils, and Climate Faculty Publications

Here, we examine the dynamic properties associated with the recent increase in the Sahel rainfall using an ensemble of five global reanalysis datasets (1979–2010). The rainfall that has been observed to be increasing over the Sahel is accounted for by enhancements in both the tropical easterly jet and the African easterly jet, both of which are known to induce wet anomalies. Moreover, positional shifts in the African easterly jet and African easterly waves (AEWs) accompanied the northward migration of the Sahel rainband. Change in the African easterly jet and AEWs are coupled to a northward shift and amplification of convective …

U.S. Law Of The Sea Cruise To Complete The Mapping Of Necker Ridge, Central Pacific Ocean, James V. Gardner, Brian R. Calder

Center for Coastal and Ocean Mapping

U.S. Law of the Sea Cruise to Complete the Mapping of Necker Ridge, Central Pacific Ocean

CRUISE KM1121

July 31, to August 10, 2011

Honolulu, HI to Honolulu, HI

Cataloguing Diseases And Pests In Captive Corals, Adrienne George

USF Tampa Graduate Theses and Dissertations

Stony corals (Order Scleractinia) are susceptible to a variety of diseases, which can occur from abiotic or biotic factors, or a combination of both. Public aquaria provide opportunities to study coral disease. Because coral mucus is the first line of defense against disease, the Biolog EcoplateTM is a useful tool to detect differences in microbial assemblages in the surface mucopolysaccharide (mucus) layer when comparing healthy and diseased corals. Histological examination is essential to document structural changes in coral tissue in response to diseases. This study identifies and characterizes diseases in captive corals through visual recognition, characterization of carbon utilization by …

From Source To Sink: An Isotopic Perspective On The Biogeochemical Relationship Between The Everglades And Florida Bay, Ana Maria Hoare

USF Tampa Graduate Theses and Dissertations

Increasing human populations and activities in coastal areas have led to high nutrient loading and estuarine ecosystem decline. Natural hydrological patterns in South Florida have been drastically altered by changes in water management and land use practices. As a result Florida Bay has experienced a series of negative ecosystem effects including hypersalinity events, degradation of water quality, and harmful algal blooms and declines in upper trophic level populations. To remediate ecosystem decline in Florida's coastal ecosystems, the Comprehensive Everglades Restoration Plan proposes to restore a more natural hydrologic flow in the Everglades. It is expected hydrologic restoration efforts will change …

Underwater Hearing In The Loggerhead Turtle (Caretta Caretta): A Comparison Of Behavioral And Auditory Evoked Potential Audiograms, Kelly Martin

USF Tampa Graduate Theses and Dissertations

Methods for collecting behavioral audiograms are often time consuming and require trained, captive subjects. It is more practical to measure hearing sensitivity using electrophysiological methods, such as auditory evoked potential (AEP) testing, in which electrodes measure action potentials in response to acoustic stimuli. These data can be collected in a matter of hours. However, results should be verified through behavioral testing. Current knowledge of marine turtle auditory abilities is based on a few electrophysiological tests. The purpose of this study was to collect and compare behavioral and auditory evoked potential audiograms in a captive adult loggerhead turtle (Caretta caretta …

The Influence Of Meteorological Parameters On Rainfall And Severe Weather In Pinellas County, Fl, Cristina A. Mazza

USF Tampa Graduate Theses and Dissertations

Pinellas County is located on a peninsula in Florida that experiences daily patterns of sea breeze associated rainfall mainly during the summer months of June through August. Previously, rainfall patterns, amounts and timing and severe weather in Pinellas County have not been examined considering dominant wind flow patterns, sea breeze circulations and other atmospheric variables. To improve forecasting of local mesoscale phenomena, this project examined the rainfall patterns, amounts and timing and severe weather occurrences that occur as a result of sea breezes and associated prevailing wind regimes within Pinellas County for the months of June, July and August for …

Stable Isotope Studies Of Paleoenvironment And Paleoclimate From Afar, Ethiopia, Zelalem K. Bedaso

USF Tampa Graduate Theses and Dissertations

The sedimentary deposits of the Hadar Formation at Dikika and the Mount Galili Formation at Galili preserve a wealth of paleoenvironmental and paleoclimatic records spanning the last 5.29 Ma. Stable carbon and oxygen isotopic compositions of herbivore tooth enamel were analyzed for more than 600 specimens of 15 different taxa from 10 stratigraphic intervals. The application of carbon and oxygen isotopes here aims principally at reconstructing shifts in the relative abundance of C₄ grasses, and its implications for climate indicators including temperature, aridity, and seasonality. The full range of δ¹³C_enamel values throughout the Plio-Pleistocene signifies a …

A Comparative Study Of Eucalanoid Copepods Residing In Different Oxygen Environments In The Eastern Tropical North Pacific: An Emphasis On Physiology And Biochemistry, Christine J. Cass

USF Tampa Graduate Theses and Dissertations

The eastern tropical north Pacific (ETNP) is characterized by one of the ocean's most severe midwater oxygen minimum zones (OMZs), where oxygen levels are often less than 5 µM. The copepod family Eucalanidae is a numerically abundant and diverse zooplankton group in the ETNP, and displays a wide range of vertical distributions related to environmental oxygen concentrations. The goal of this dissertation was to develop a better understanding of the ecology, physiology, and biochemistry of closely related copepod species (family Eucalanidae) that inhabit the ETNP OMZ system. This was accomplished through examining different parameters relating to (1) metabolic rates, (2) …

Microbial Landscapes Of Corals And Ctenophores, Camille Arian Daniels

USF Tampa Graduate Theses and Dissertations

As technology and engineering allow mankind to survey nature at finer scales, the importance of bacteria has been elucidated in their metabolic diversity, ability to transfer genetic information, involvement in biogeochemical cycling, and sheer abundance. With an individual domain of life unto themselves, this diverse group of microorganisms plays an integral role in facilitating life on land and in the oceans, and is second only to viruses in abundance on Earth. They carve niches in a wide range of environments, including those inhospitable to other life forms, and reside in concert or to the detriment of other microbes and/or hosts …

Palaeoclimatic Significance Of Perennial Ice Accumulations In Caves: An Example From Scarisoara Ice Cave, Romania, Aurel Persoiu Tiritu

USF Tampa Graduate Theses and Dissertations

Stable isotopes in ice cores drilled in the polar and high-mountain region have been used intensively to reconstruct past climatic changes and atmospheric dynamics. However, no similar studies have been conducted on perennial ice accumulations in caves due to a limited understanding of the links between the external and cave environments, and the way in which the climatic signal can be recorded by the cave ice.

In this thesis, we successfully designed and build a research methodology for the reconstruction of past climatic changes based on perennial ice accumulation in caves, using as example the Scarisoara Ice Cave, Romania. The …

Improvements To A Real-Time, Satellite-Derived Surface Current Product (Oscar) And Evaluation In The Intra-American Sea, Mindy Jo Robinson

USF Tampa Graduate Theses and Dissertations

A method of creating real-time height fields using available gridded altimetry data combined with extrapolated values computed using linear predictive coding for use in the Ocean Surface Currents Analysis, Real-time (OSCAR) is developed and tested. This method is implemented by Earth and Space Research (ESR) to produce operational height fields that are in turn used to calculate the geostrophic component velocity of OSCAR. The gridded altimetry product used in OSCAR is evaluated against sea level measured by tide gauges while the operational total near-surface velocity from OSCAR (geostrophic plus Ekman component velocity) is evaluated using ocean velocities from moored and …