Oceanography and Atmospheric Sciences and Meteorology Commons^™

Collection And Corrections Of Oblique Multiangle Hyperspectral Bidirectional Reflectance Imagery Of The Water Surface, Charles R. Bostater Jr., Taylor S. Oney

Ocean Engineering and Marine Sciences Faculty Publications

Hyperspectral images of coastal waters in urbanized regions were collected from fixed platform locations. Surf zone imagery, images of shallow bays, lagoons and coastal waters are processed to produce bidirectional reflectance factor (BRF) signatures corrected for changing viewing angles. Angular changes as a function of pixel location within a scene are used to estimate changes in pixel size and ground sampling areas. Diffuse calibration targets collected simultaneously from within the image scene provides the necessary information for calculating BRF signatures of the water surface and shorelines. Automated scanning using a pushbroom hyperspectral sensor allows imagery to be collected on the …

Bumper V1.0: A Bayesian User-Friendly Model For Palaeo-Environmental Reconstruction, Philip B. Holden, H. John B. Birks, Stephen J. Brooks, Mark B. Bush, Grace M. Hwang, Frazer Matthews-Bird, Bryan G. Valencia, Robert Van Woeslk

Ocean Engineering and Marine Sciences Faculty Publications

We describe the Bayesian user-friendly model for palaeo-environmental reconstruction (BUMPER), a Bayesian transfer function for inferring past climate and other environmental variables from microfossil assemblages. BUMPER is fully self-calibrating, straightforward to apply, and computationally fast, requiring ~2 s to build a 100- taxon model from a 100-site training set on a standard personal computer. We apply the model’s probabilistic framework to generate thousands of artificial training sets under ideal assumptions. We then use these to demonstrate the sensitivity of reconstructions to the characteristics of the training set, considering assemblage richness, taxon tolerances, and the number of training sites. We find …

Multiple Drivers Of Seasonal Change In Pri: Implications For Photosynthesis 2. Stand Level, Anatoly A. Gitelson, John A. Gamon, Alexei E. Solovchenko

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The goal of this study was to explore the relationships between stand-level photochemical reflectance index (PRI) and canopy structure/ pigment pools, as well as light use efficiency (LUE) of photosynthetically active vegetation focusing on seasonal or ontogenetic time frames. PRI was originally designed as a means of assessing the xanthophyll cycle and LUE over short (e.g. diurnal) time frames, and few studies have explored the drivers of PRI over longer, seasonal time frames, particularly in crops having different photosynthetic pathways or canopy structures. Consequently, our purpose was to understand and quantify the drivers of PRI responses over seasonal time scales …

Review Of A Chorus Of Cranes: The Cranes Of North America And The World By Paul A. Johnsgard, Aaron T. Pearse

United States Geological Survey: Staff Publications

Cranes (Gruidae) are widely distributed throughout the world, have lived on Earth for several million years, and currently reside on five continents. Archaeological evidence and historical references suggest that humans have interacted with and been captivated by cranes for many thousands of years (e.g., Leslie 1988, Muellner 1990). A glimpse of our reverence for these birds can be found in A Chorus of Cranes by Paul A. Johnsgard, with photographs by Thomas D. Mangelsen. Many species of cranes are currently identified as threatened or endangered, and their future will likely rest in the hands of humans; this book presents their …

Variation In Δ15N And Δ13C Values Of Forages For Arctic Caribou: Effects Of Location, Phenology And Simulated Digestion, Lindsay L. Vansomeren, Perry S. Barboza, David D. Gustine, M. Syndonia Bret-Harte

United States Geological Survey: Staff Publications

RATIONALE: The use of stable isotopes for dietary estimates of wildlife assumes that there are consistent differences in isotopic ratios among diet items, and that the differences in these ratios between the diet item and the animal tissues (i.e., fractionation) are predictable. However, variation in isotopic ratios and fractionation of δ¹³C and δ¹⁵N values among locations, seasons, and forages are poorly described for arctic herbivores especially migratory species such as caribou (Rangifer tarandus).

METHODS: We measured the δ¹³Cand δ¹⁵N values of seven species of forage growing along a 200-km …

Assessment Of Frequency And Duration Of Point Counts When Surveying For Golden Eagle Presence, Ben R. Skipper, Clint W. Boal, Jo-Szu Tsai, Mark R. Fuller

United States Geological Survey: Staff Publications

We assessed the utility of the recommended golden eagle (Aquila chrysaetos) survey methodology in the U.S. Fish and Wildlife Service 2013 Eagle Conservation Plan Guidance. We conducted 800-m radius, 1-hr point-count surveys broken into 20-min segments, during 2 sampling periods in 3 areas within the Intermountain West of the United States over 2 consecutive breeding seasons during 2012 and 2013. Our goal was to measure the influence of different survey time intervals and sampling periods on detectability and use estimates of golden eagles among different locations. Our results suggest that a less intensive effort (i.e., survey duration shorter …

Flood Effects Provide Evidence Of An Alternate Stable State From Dam Management On The Upper Missouri River, K. Skalak, A. Benthem, C. Hupp, E. Schenk, J. Galloway, R. Nustad

United States Geological Survey: Staff Publications

We examine how historic flooding in 2011 affected the geomorphic adjustments created by dam regulation along the approximately 120 km free flowing reach of the Upper Missouri River bounded upstream by the Garrison Dam (1953) and downstream by Lake Oahe Reservoir (1959) near the City of Bismarck, ND, USA. The largest flood since dam regulation occurred in 2011. Flood releases from the Garrison Dam began in May 2011 and lasted until October, peaking with a flow of more than 4200m³ s^-1. Channel cross-section data and aerial imagery before and after the flood were compared with historic rates …

Micronuclei And Other Erythrocyte Nuclear Abnormalities In Fishes From The Great Lakes Basin,Usa, Ryan P. Braham, Vicki S. Blazer, Cassidy H. Shaw, Patricia M. Mazik

United States Geological Survey: Staff Publications

Biological markers (biomarkers) sensitive to genotoxic and mutagenic contamination in fishes are widely used to identify exposure effects in aquatic environments. The micronucleus assay was incorporated into a suite of indicators to assess exposure to genotoxic and mutagenic contamination at five Great Lakes Areas of Concern (AOCs), as well as one non-AOC (reference) site. The assay allowed enumeration of micronuclei as well as other nuclear abnormalities for both site and species comparisons. Erythrocyte abnormality data was also compared to skin and liver tumor prevalence and hepatic transcript abundance. Erythrocyte abnormalities were observed at all sites with variable occurrence and severity …

Challenges For Creating A Site-Specific Groundwater-Use Record For The Ozark Plateaus Aquifer System (Central Usa) From 1900 To 2010, Katherine J. Knierim, Anna M. Nottmeier, Scott Worland, Drew A. Westerman, Brian R. Clark

United States Geological Survey: Staff Publications

Hydrologic budgets to determine groundwater availability are important tools for water-resource managers. One challenging component for developing hydrologic budgets is quantifying water use through time because historical and site-specific water-use data can be sparse or poorly documented. This research developed a groundwater-use record for the Ozark Plateaus aquifer system (central USA) from 1900 to 2010 that related county-level aggregated water-use data to site-specific well locations and aquifer units. A simple population-based linear model, constrained to 0 million liters per day in 1900, provided the best means to extrapolate groundwater-withdrawal rates pre-1950s when there was a paucity of water-use data. To …

Habitat Mosaics And Path Analysis Can Improve Biological Conservation Of Aquatic Biodiversity In Ecosystems With Low-Head Dams, Sean M. Hitchman, Martha E. Mather, Joseph M. Smith, Jane S. Fencl

United States Geological Survey: Staff Publications

Conserving native biodiversity depends on restoring functional habitats in the face of human-induced disturbances. Low-head dams are a ubiquitous human impact that degrades aquatic ecosystems worldwide. To improve our understanding of how low-head dams impact habitat and associated biodiversity, our research examined complex interactions among three spheres of the total environment. i.e., how low-head dams (anthroposphere) affect aquatic habitat (hydrosphere), and native biodiversity (biosphere) in streams and rivers. Creation of lake-like habitats upstream of low-head dams is a well-documented major impact of dams. Alterations downstream of low head dams also have important consequences, but …

Temporal Shift Of Sea Turtle Nest Sites In An Eroding Barrier Island Beach, Ikuko Fujisaki, Margaret Lamont, Ray Carthy

United States Geological Survey: Staff Publications

Shoreline changes affect functionality of a sandy beach as a wildlife habitat and coastal erosion is among the primary causes of the changes. We examined temporal shifts in locations where loggerheads placed nests in relation to coastal erosion along a barrier island beach in the northern Gulf of Mexico. We first confirmed consistency in long-term (1855–2001), short-term (1976–2001), and more recent (2002–2012) shoreline change rates in two adjacent beach sections, one historically eroding (west beach) and the other accreting (east beach). The mean annual shoreline change rate in the two sections was significantly different in all time periods. The recent …

Degradation Of Crude 4‑Mchm (4-Methylcyclohexanemethanol) In Sediments From Elk River, West Virginia, Isabelle M. Cozzarelli, Denise M. Akob, Mary Jo Baedecker, Tracey Spencer, Jeanne Jaeschke, Darren S. Dunlap, Adam C. Mumford, Amisha T, Poret-Peterson, Douglas B. Chambers

United States Geological Survey: Staff Publications

In January 2014, approximately 37 800 L of crude 4-methylcyclohexanemethanol (crude MCHM) spilled into the Elk River, West Virginia. To understand the long-term fate of 4-MCHM, we conducted experiments under environmentally relevant conditions to assess the potential for the 2 primary compounds in crude MCHM (1) to undergo biodegradation and (2) for sediments to serve as a long-term source of 4-MCHM. We developed a solid phase microextraction (SPME) method to quantify the cis- and transisomers of 4-MCHM. Autoclaved Elk River sediment slurries sorbed 17.5% of cis-4-MCHM and 31% of trans-4-MCHM from water during the 2-week experiment. …

Design Tradeoffs In Long-Term Research For Stream Salamanders, Adrianne B. Brand, Evan H. Campbell Grant

United States Geological Survey: Staff Publications

Long-term research programs can benefit from early and periodic evaluation of their ability to meet stated objectives. In particular, consideration of the spatial allocation of effort is key. We sampled 4 species of stream salamanders intensively for 2 years (2010–2011) in the Chesapeake and Ohio Canal National Historical Park, Maryland, USA to evaluate alternative distributions of sampling locations within stream networks, and then evaluated via simulation the ability of multiple survey designs to detect declines in occupancy and to estimate dynamic parameters (colonization, extinction) over 5 years for 2 species. We expected that fine scale microhabitat variables (e.g., cobble, detritus) …

Floristic Quality Index And Forested Floristic Quality Index: Assessment Tools For Restoration Projects And Monitoring Sites In Coastal Louisiana, Kari F. Cretini, William B. Wood, Jenneke M. Visser, Ken W. Krauss, Leigh Anne Sharp, Gregory D. Steyer, Gary P. Shaffer, Sarai C. Piazza

United States Geological Survey: Staff Publications

In 2003, the Coastwide Reference Monitoring System (CRMS) program was established in coastal Louisiana marshes and swamps to assess the effectiveness of individual coastal restoration projects and the cumulative effects of multiple projects at regional and coastwide scales (Steyer et al., 2003). In order to make these assessments, analytical teams were assembled for each of the primary data types sampled under theCRMS program, including vegetation, hydrology, landscape, and soils. These teams consisted of scientists and support staff from the US Geological Survey and other federal agencies, the Coastal Protection and Restoration Authority of Louisiana, and university academics. Each team was …

Linking Animals Aloft With The Terrestrial Landscape, Jeffrey J. Buler, Wylie C. Barrow Jr., Matthew E. Boone, Deanna K. Dawson, Robert H. Diehl, Frank R. Moore, Lori A. Randall, Timothy D. Schreckengost, Jaclyn A. Smolinsky

United States Geological Survey: Staff Publications

Despite using the aerosphere for many facets of their life, most flying animals (i.e., birds, bats, some insects) are still bound to terrestrial habitats for resting, feeding, and reproduction. Comprehensive broad-scale observations by weather surveillance radars of animals as they leave terrestrial habitats for migration or feeding flights can be used to map their terrestrial distributions either as point locations (e.g., communal roosts) or as continuous surface layers (e.g., animal densities in habitats across a landscape). We discuss some of the technical challenges to reducing measurement biases related to how radars sample the aerosphere and the flight behavior of animals. …

Extending The Habitat Concept To The Airspace, Robert H. Diehl, Anna C. Peterson, Rachel T. Bolus, Douglas Johnson

United States Geological Survey: Staff Publications

Habitat is one of the most familiar and fundamental concepts in the fields of ecology, animal behavior, and wildlife conservation and management. Humans interact with habitats through their senses and experiences and education to such a degree that their perceptions of habitat have become second nature. For this reason, it may be difficult at first to accept the airspace as habitat, an area that is invisible, untouchable, highly dynamic, and its occupants difficult to see. Nonetheless, the habitat concept, by definition and in practice, applies readily to the airspace. Some ecological and behavioral processes including habitat selection, foraging, and reproduction …

Linking Animals Aloft With The Terrestrial Landscape, Jeffrey J. Buler, Wylie C. Barrow Jr., Matthew E. Boone, Deanna K. Dawson, Robert H. Diehl, Frank R. Moore, Lori A. Randall, Timothy D. Schreckengost, Jaclyn A. Smolinsky

United States Geological Survey: Staff Publications

Despite using the aerosphere for many facets of their life, most flying animals (i.e., birds, bats, some insects) are still bound to terrestrial habitats for resting, feeding, and reproduction. Comprehensive broad-scale observations by weather surveillance radars of animals as they leave terrestrial habitats for migration or feeding flights can be used to map their terrestrial distributions either as point locations (e.g., communal roosts) or as continuous surface layers (e.g., animal densities in habitats across a landscape). We discuss some of the technical challenges to reducing measurement biases related to how radars sample the aerosphere and the flight behavior of animals. …

Extending The Habitat Concept To The Airspace, Robert H. Diehl, Anna C. Peterson, Rachel T. Bolus, Douglas Johnson

United States Geological Survey: Staff Publications

Habitat is one of the most familiar and fundamental concepts in the fields of ecology, animal behavior, and wildlife conservation and management. Humans interact with habitats through their senses and experiences and education to such a degree that their perceptions of habitat have become second nature. For this reason, it may be difficult at first to accept the airspace as habitat, an area that is invisible, untouchable, highly dynamic, and its occupants difficult to see. Nonetheless, the habitat concept, by definition and in practice, applies readily to the airspace. Some ecological and behavioral processes including habitat selection, foraging, and reproduction …

Water-Level And Recoverable Water In Storage Changes, High Plains Aquifer, Predevelopment To 2015 And 2013–15, Virginia L. Mcguire

United States Geological Survey: Staff Publications

The High Plains aquifer underlies 111.8 million acres (about 175,000 square miles) in parts of eight States—Colorado, Kansas, Nebraska, New Mexico, Oklahoma, South Dakota, Texas, and Wyoming. Water-level declines began in parts of the High Plains aquifer soon after the beginning of substantial irrigation with groundwater in the aquifer area (about 1950). This report presents water-level changes and change in recoverable water in storage in the High Plains aquifer from predevelopment (about 1950) to 2015 and from 2013 to 2015.

The methods to calculate area-weighted, average water-level changes; change in recoverable water in storage; and total recoverable water in storage …

Key Differences Between Lakes And Reservoirs Modify Climate Signals: A Case For A New Conceptual Model, Nicole M. Hayes, Bridget R. Deemer, Jessica R. Corman, N. Roxanna Razavi, Kristin E. Strock

United States Geological Survey: Staff Publications

Lakes and reservoirs are recognized as important sentinels of climate change, integrating catchment and atmospheric climate change drivers. Climate change conceptual models generally consider lakes and reservoirs together despite the possibility that these systems respond differently to climate-related drivers. Here, we synthesize differences between lake and reservoir characteristics that are likely important for predicting waterbody response to climate change. To better articulate these differences, we revised the energy mass flux framework, a conceptual model for the effects of climate change on lentic ecosystems, to explicitly consider the differential responses of lake versus reservoir ecosystems. The model predicts that catchment and …

Sea-Level Rise Induced Amplification Of Coastal Protection Design Heights, Arne Arns, Soenke Dangendorf, Juergen Jensen, Stefan Talke, Jens Bender, Charitha Pattiaratchi

Civil and Environmental Engineering Faculty Publications and Presentations

Coastal protection design heights typically consider the superimposed effects of tides, surges, waves, and relative sea-level rise (SLR), neglecting non-linear feedbacks between these forcing factors. Here, we use hydrodynamic modelling and multivariate statistics to show that shallow coastal areas are extremely sensitive to changing non-linear interactions between individual components caused by SLR. As sea-level increases, the depth-limitation of waves relaxes, resulting in waves with larger periods, greater amplitudes, and higher run-up; moreover, depth and frictional changes affect tide, surge, and wave characteristics, altering the relative importance of other risk factors. Consequently, sea-level driven changes in wave characteristics, and to a …

Mapping The Nonstationary Internal Tide With Satellite Altimetry, Edward Zaron

Civil and Environmental Engineering Faculty Publications and Presentations

t Temporal variability of the internal tide has been inferred from the 23 year long combined records of the TOPEX/Poseidon, Jason-1, and Jason-2 satellite altimeters by combining harmonic analysis with an analysis of along-track wavenumber spectra of sea-surface height (SSH). Conventional harmonic analysis is first applied to estimate and remove the stationary components of the tide at each point along the reference ground tracks. The wavenumber spectrum of the residual SSH is then computed, and the variance in a neighborhood around the wavenumber of the mode-1 baroclinic M2 tide is interpreted as the sum of noise, broadband nontidal processes, and …

Green Infrastructure Training For Veterans, Carol L. Considine, Michael W. Seek, Jon Lester, Anthony W. Dean

Engineering Technology Faculty Publications

The Environmental Protection Agency launched a Strategic Agenda to Protect Waters and Build More Livable Communities through Green Infrastructure in April of 2011. This initiative supports local communities in using green infrastructure to manage rain water while creating co-benefits of green space, which makes communities more attractive and livable. (EPA) In the fall of 2014 the Environmental Protection Agency along with the U.S. Department of Agriculture, U.S. Department of Defense, U.S. Department of Energy, U.S. Department of Housing and Urban Development, U.S. Department of the Interior and U.S. Department of Transportation signed a federal letter of support for green infrastructure …

Marsh-Exported Dissolved Organic Matter Fate In Estuaries, Laura Ann Logozzo

Dissertations and Theses

Dissolved organic matter (DOM) is a significant driver of estuarine productivity and nutrient cycling. The colored component of DOM, chromophoric dissolved organic matter (CDOM), impacts coastal optical properties, ocean color, and light attenuation. While marshes are largely considered sinks for carbon due to their high productivity and low soil carbon degradation rates, laterally they are sources of carbon as optically and chemically distinct DOM to surrounding aquatic ecosystems; these inputs are often essential in sustaining a net heterotrophic system. However, the photoreactivity and bioavailability of marsh-exported DOM is largely uncategorized, thus making it difficult to quantify its impacts on estuarine …

Is Initial Post-Disturbance Regeneration Indicative Of Longer-Term Trajectories?, Nathan S. Gill, Daniel Jarvis, Thomas T. Veblen, Steward T.A. Pickett, Dominik Kulakowski

Geography

The ability to estimate and model future vegetation dynamics is a central focus of contemporary ecology and is essential for understanding future ecological trajectories. It is therefore critical to understand when the influence of initial post-disturbance regeneration versus stochastic processes dominates long-term post-disturbance ecological processes. Often, conclusions about post-disturbance dynamics are based upon initial regeneration in the years immediately after disturbances. However, the degree to which initial post-disturbance regeneration indicates longer-term trends is likely to be contingent on the types, intensities, and combinations of disturbances, as well as pre-disturbance ecosystem structure and composition. Our relatively limited understanding of why initial …

An Example Of Nature's Mathematics: The Rainbow, John A. Adam

Mathematics & Statistics Faculty Publications

No abstract provided.

Assessing The Optimized Precision Of The Aircraft Mass Balance Method For Measurement Of Urban Greenhouse Gas Emission Rates Through Averaging, Alexie M F Heimburger, Rebecca M. Harvey, Paul B. Shepson, Brian H. Stirm, Chloe Gore, Jocelyn Turnbull, Maria Obiminda L. Cambaliza, Olivia E. Salmon, Anna-Elodie M. Kerlo, Tegan Lavoie, Kenneth J. Davis, Thomas Lauvaux, Anna Karion, Colm Sweeney, W Alan Brewer, R Michael Hardesty, Kevin R. Gurney

Physics Faculty Publications

To effectively address climate change, aggressive mitigation policies need to be implemented to reduce greenhouse gas emissions. Anthropogenic carbon emissions are mostly generated from urban environments, where human activities are spatially concentrated. Improvements in uncertainty determinations and precision of measurement techniques are critical to permit accurate and precise tracking of emissions changes relative to the reduction targets. As part of the INFLUX project, we quantified carbon dioxide (CO2), carbon monoxide (CO) and methane (CH4) emission rates for the city of Indianapolis by averaging results from nine aircraft-based mass balance experiments performed in November-December 2014. Our goal was to assess the …

Climate Change Adaptation For Southern California Groundwater Managers: A Case Study Of The Six Basins Aquifer, Frank Lyles

Pomona Senior Theses

Groundwater has been very important to the economic development of Southern California, and will continue to be a crucial resource in the 21st century. However, Climate Change threatens to disrupt many of the physical and economic processes that control the flow of water in and out of aquifers. One groundwater manager, the Six Basins Watermaster in eastern Los Angeles and western San Bernardino Counties, has developed a long-term planning document called the Strategic Plan that mostly fails to address the implications of Climate Change, especially for local water supplies. This thesis presents an in-depth analysis of the Six Basin Watermaster’s …

Sediment Transport And Slope Stability In The Northern Gulf Of Mexico, Jeffrey Blake Obelcz

LSU Doctoral Dissertations

Sediment transport and slope stability are fundamental organizing agents of the geological record. These processes have been extensively studied along the northern margin of the Gulf of Mexico basin for both basic and applied purposes, but our knowledge of them is limited by the spatial and temporal sampling capabilities of traditional geologic oceanographic surveying tools such as coring, single-beam echosounders, and sidescan sonar. This dissertation seeks to update the state of knowledge regarding northern Gulf of Mexico sediment transport and slope stability from annual to millennial timescales, primarily using relatively high-resolution acoustic geophysical tools such as swath bathymetric echosounders and …

The Effects Of Thermal Stress On Fluorescent Protein Expression In An Indo-Pacific Scleractinian Coral Species, Acropora Tenuis, Anna Knochel

Independent Study Project (ISP) Collection

The scleractinian coral species that so heavily define tropical coral reefs are increasingly threatened by anthropogenic global warming. Rising sea surface temperatures in combination with light stress causes the photosynthetic breakdown of the coral’s algal symbiont, Symbiodinium. Corals have developed a number of physiological responses to handle acute stressors, such as the production of ultraviolet-protecting amino acids, heat shock proteins, the ability to shift symbionts, and the production of fluorescent proteins. The latter has been thought to play a photoprotective role in the coral holobiont, and studies have shown evidence that corals orient these pigments to divert harmful light away …