Oceanography and Atmospheric Sciences and Meteorology Commons^™

On The Seasonal Mixed Layer Simulated By A Basin-Scale Ocean Model And The Mellor-Yamada Turbulence Scheme, Tal Ezer

CCPO Publications

Seasonal changes and vertical mixing processes in the upper layers of the North Atlantic Ocean are simulated with a basin-scale sigma coordinate ocean model that uses the Mellor-Yamada turbulence closure scheme. The cause of insufficient surface mixing and a too shallow summertime thermocline, common problems of ocean models of this type, is investigated in detail by performing a series of sensitivity experiments with different surface forcing conditions and different turbulence parameterizations. A recent improvement in the parameterization of the dissipation term in the Mellor-Yamada turbulence scheme, which has shown a significant improvement in one-dimensional calculations, had a positive but relatively …

Physicochemical Characteristics And Macroinvertebrate Assemblages Of Riffles Upstream And Downstream Of A Streambank Impacted By Unrestricted Cattle Access, Ronald L. Johnson, Daniel D. Ward, Richard S. Grippo

Journal of the Arkansas Academy of Science

Riparian zones are important contributors to stream ecosystem health. Alteration of such areas can change stream structure and function, resulting in modified productivity and hydrologic patterns. We studied two riffle sites on the South Fork of the Spring River in Fulton County, AR upstream and downstream of a streambank ostensibly degraded by unrestricted cattle access. The two sites were measured for differences in physical habitat (including bank width, stream velocity, depth, substrate composition, and embeddedness), chemical characteristics (including dissolved oxygen, pH, conductivity, turbidity and total suspended solids) and biological characteristics (including benthic macroinvertebrate community composition, similarity, and standing crop). Measurements …

Department Of Fisheries Annual Report Highlights 1999 - 2000, Department Of Fisheries, Western Australia

Department of Fisheries Annual Reports

1999/2000 has marked a 'sea change' in fisheries management throughout Australia towards the principles of Ecologically Sustainable Development (ESD). This is a dynamic concept with an evolving framework that requires a balancing of social, economic and environmental considerations.

The principles of ESD - of using, conserving and enhancing the community's resources so that ecological processes, on which life depends, are maintained, and the total quality of fisheries, now and in the future, can be increased - are vital in a state, national and international context for Fisheries WA and its clients. Having fisheries that are governed under ESD principles is …

Natural And Anthropogenic Influences On The Distribution Of The Threatened Neosho Madtom In A Midwestern Warmwater Stream, Mark L. Wildhaber, Vernon M. Tabor, Daniel W. Mulhern, Kenneth L. Powell, Scott P. Sowa

United States Geological Survey: Staff Publications

We attempted to discern the contributions of physical habitat, water chemistry, nutrients, and contaminants from historic lead-zinc mining activities on the riffle-dwelling benthic fish community of the Spring River, a mid western warm water stream that originates in Missouri and flows into Kansas and Oklahoma. The Spring River has a fish community that includes the Neosho madtom Noturus placidus, a species federally listed as threatened. Although anthropogenic factors such as contaminants limited populations and densities of fishes, an integrated assessment of natural and anthropogenic factors was necessary to effectively estimate the influence of the latter. Fish populations in the …

Estuarine Relationships Between Zooplankton Community Structure And Trophic Gradients, Gyung Soo Park, Harold G. Marshall

Biological Sciences Faculty Publications

Zooplankton and water quality parameters were investigated at eight mesohaline stations in the lower Chesapeake Bay and Elizabeth River from January through December 1994 to identify the changes of zooplankton community structure with increased eutrophication. The total micro- and mesozooplankton biomass decreased with the increase of eutrophication. However, the relative proportion of microzooplankton increased with increased eutrophication. Within highly eutrophied waters, the small oligotrichs (m) and rotifers dominated the total zooplankton biomass (as carbon). However, tintinnids, copepod nauplii and mesozooplankton significantly decreased with the increase of eutrophication. These patterns were consistent throughout the seasons and had significant relationships statistically. These …

Modeling The Bull Run River-Reservoir System, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The City of Portland, Water Bureau currently operates 2 Bull Run reservoirs, Reservoir #2 and Reservoir #1 as a water supply source in the Bull Run watershed shown in Figure 1 and Figure 2. The Water Bureau wants to operate their water supply system in order to meet both water supply objectives and fish habitat objectives downstream of the Bull Run reservoirs in Bull Run River. In addition, a third Bull Run reservoir has been proposed as an additional water supply source. This reservoir also may be used to meet water supply and fish habitat objectives in Bull Run River. …

Can An Optical Plankton Counter Produce Reasonable Estimates Of Zooplankton Abundance And Biovolume In Water With High Detritus?, X. Zhang, M. Roman, A. Sanford, H. Adolf, C. Lascara, R. Burgett

CCPO Publications

The Optical Plankton Counter (OPC) has been used in oceanic and fresh waters to estimate zooplankton abundance and biovolume. However, it is not clear whether the OPC can produce accurate estimates of zooplankton abundance and biovolume in waters with high detritus. In order to test the capability of the OPC to estimate zooplankton abundance and biovolume in Chesapeake Bay, two sets of laboratory experiments were conducted using water with high detritus concentrations collected from the upper Choptank estuary of Chesapeake Bay and laboratory cultured Artemia. Our results suggest that the OPC is able to produce accurate estimates of zooplankton biovolume …

Fortnightly Variability In The Transverse Dynamics Of A Coastal Plain Estuary, Arnoldo Valle-Levinson, Kuo-Chuin Wong, Kamazima M. M. Lwiza

CCPO Publications

Current velocity and water density profiles were obtained along two crossestuary transects with the purpose of determining the fortnightly variability of the transverse dynamics in a partially stratified coastal plain estuary. The profiles were measured with a towed acoustic Doppler current profiler and a conductivity-temperaturedepth recorder in the James River estuary, Virginia. The cross-estuary transects were sampled during the spring tides of October 26-27, 1996, and the ensuing neap tides of November 2-3, 1996. The transects were-4 km long, featured a bathymetry that consisted of a channel flanked by shoals, and were sampled repeatedly during two semidiurnal tidal cycles (25 …

On The Sources Of Weddell Gyre Antarctic Bottom Water, Michael P. Meredith, Ricardo A. Locarnini, Kim A. Van Scoy, Andrew J. Watson, Karen J. Heywood, Brian A. King

CCPO Publications

In March-April 1995, as part of the World Ocean Circulation Experiment section A23, we completed 49 hydrographic stations across the Weddell Gyre and southern Antarctic Circumpolar Current, from the Antarctic continental shelf (72.5°S, 16.5°W) to South Georgia (55°S, 34.5°W). Chlorofiuorocarbon (CFC11, CFC-12, and CFC-113) data collected at these stations reveal that distinct sources renew the Antarctic Bottom Water (defined as waters with potential temperatures less than 0°C) of the Weddell Gyre. Weddell Sea Bottom Water (defined as waters with potential temperatures less than- 0.7°C) formed in the western Weddell Sea has CFC concentrations about 5 to 6 times higher in …

Soapbox: The Academic Research Fleet: An Exciting Time For Renewal, Larry Atkinson

CCPO Publications

(First Paragraph) Academic research ships in the United States are the envy of many scientists around the world. A great strength of our system is the diversity of ships and operators: users have a choice, the system can change. A weakness of the system is that very diversity: sometimes it is hard for us to act together. Nevertheless, we now must act together. The vitality of the academic fleet in the coming decades is at stake. The reason is simply because many of our ships, especially in the intermediate size range, will soon reach the end of their useful life.

Convergence Of Lateral Flow Along A Coastal Plain Estuary, Arnoldo Valle-Levinson, Chunyan Li, Kuo-Chuin Wong, Kamazima M. M. Lwiza

CCPO Publications

A set of velocity profiles obtained in the James River estuary with an acoustic Doppler current profiler was used in combination with the results of an analytic tidal model to depict the appearance of surface lateral flow convergences (δv/δy) during both flood and ebb stages of the tidal cycle. The bathymetry of the estuary was characterized by a main channel and a secondary channel separated by relatively narrow shoals. Lateral surface flow convergences appeared over the edges of the channels and were produced by the phase lag of the flow in the channel relative to the …

Measurements Of Salinity In The Coastal Ocean: A Review Of Requirements And Technologies, Catherine Woody, Eddie Shih, Jerry Miller, Thomas Royer, Larry P. Atkinson, Richard S. Moody

CCPO Publications

Salinity, a measure of the dissolved salts in seawater, is a fundamental property of seawater and basic to understanding biological and physical processes in coastal waters. In the open ocean long term salinity measurements are identified as necessary to understand global climate studies, hydrological cycle, and circulation. In the coastal oceans, information on salinity is critical to understanding biological effects on ecosystem function such as disease, nursery grounds, or harmful algal blooms and on physical processes such as freshwater runoff estuarine mixing, and coastal currents. While the importance of salinity is recognized, little attention has been given to making routine …

The Linkage Between Upper Circumpolar Deep Water (Ucdw) And Phytoplankton Assemblages On The West Antarctic Peninsula Continental Shelf, Barbara B. Prézelin, Eileen E. Hofmann, Claudia Mengelt, John M. Klinck

OES Faculty Publications

Intrusion of Upper Circumpolar Deep Water (UCDW), which was derived from the Antarctic Circumpolar Current (ACC), onto the western Antarctic Peninsula (WAP) shelf region in January 1993 provided a reservoir of nutrient-rich, warmer water below 150 m that subsequently upwelled into the upper water column. Four sites, at which topographically-induced upwelling of UCDW occurred, were identified in a 50 km by 400 km band along the outer WAP continental shelf. One additional site at which wind-driven upwelling occurred was also identified. Diatom-dominated phytoplankton assemblages were always associated with a topographically-induced upwelling site. Such phytoplankton communities were not detected at any …

Iron And Manganese In The Ross Sea, Antarctica: Seasonal Iron Limitation In Antarctic Shelf Waters, Peter N. Sedwick, Giacomo R. Ditullio, Denis J. Mackey

OES Faculty Publications

Dissolved iron and manganese and total dissolvable iron were measured in water column samples from the Polynya Region of the southern Ross Sea in cruises in Nov.-Dec. 1994 (spring 1994) and Dec. 1995 to Jan. 1996 (summer 1995). Iron and manganese addition bottle incubation experiments were also performed on these cruises to assess the nutritional sufficiency of ambient iron and manganese concentrations for phytoplankton growth. Generally high dissolved iron concentrations (>0.5 nM) and relatively complex iron and manganese vertical profiles were obtained in spring 1994 vs. summer 1995. Dissolved iron concentrations in the upper water column averaged 1.0 nM …

Biochemical Composition Of Particles And Dissolved Organic Matter Slong An Estuarine Gradient: Sources And Implications For Dom Reactivity, Antonio Mannino, H. Rodger Harvey

OES Faculty Publications

The chemical composition of high molecular weight dissolved organic matter (DOM) and particulate organic matter (POM) was examined along the salinity gradient of the Delaware Estuary. DOM was collected and fractionated by tangential-flow ultrafiltration into 1-30 kDa (HDOM; high molecular weight) and 30 kDa to 0.2 μm (VHDOM; very high molecular weight) and compared to particles collected in parallel. Polysaccharides comprised 12-43% of particulate organic carbon (POC), 30-56% of VHDOM carbon, and 7.5-19% of HDOM carbon. Hydrolyzable amino acids comprised 17-38% of POC, 5.4-12% of VHDOM carbon, and 1.5-4.2% of HDOM carbon. Only 7-43% of dissolved organic nitrogen in VHDOM …

Dating Marine Terraces With Relative-Age And Correlated-Age Methods, Daniel R. Muhs

United States Geological Survey: Staff Publications

Coastal landforms, and particularly emergent marine terraces, a re amongt he most importantg eomorphicfe aturesi n studieso f Quaternarys eal evel fluctuationsa nd neotectonics. A general model, first articulated by Alexander (1953) and borne out by detailedr ecent studieso n many coastlinesi,s that emergent flights of erosional terraces and coral reefs (Fig. 1) are the resulto f glacioeustaticallyc ontrolledf luctuations of global sea level superimposed on steady uplift. Similiarity of U-series ages of coral from both constructional reefsi n the tropicsa nd erosionalt erracesi n midlatitudesh as provided a rigorous test of this model (Mesolella and others, 1969; Bloom and …

Geomorphometry – Diversity In Quantitative Surface Analysis, Richard J. Pike

United States Geological Survey: Staff Publications

A widening variety of applications is diversifying geomorphometry (digital terrain modelling), the quantitative study of topography. An amalgam of earth science, mathematics, engineering and computer science, the discipline has been revolutionized by the computer manipulation of gridded terrain heights, or digital elevation models (DEMs). Its rapid expansion continues. This article reviews the remarkable diversity of recent morphometric work in 15 selected topics and discusses their significance and prospects. The quantitative analysis of industrial microsurface topography is introduced to the earth science community. The 14 other topics are Internet access to geomorphometry; global DEMs; DEM modelling of channel networks; …

Single-Dilution Enzyme-Linked Immunosorbent Assay For Quantification Of Antigen-Specific Salmonid Antibody, Stewart W. Alcorn, Ronald J. Pascho

United States Geological Survey: Staff Publications

An enzyme-linked immunosorbent assay (ELISA) was developed on the basis of testing a single dilution of serum to quantify the level of antibody to the p57 protein of Renibacterium salmoninarum in sockeye salmon (Oncorhynchus nerka). The levels of antibody were interpolated from a standard curve constructed by relating the optical densities (OD) produced by several dilutions of a high-titer rainbow trout (O. mykiss) antiserum to the p57 protein. The ELISA OD values produced by as many as 36 test sera on each microplate were compared with the standard curve to calculate the antigen-specific antibody activity. Repeated …

Viability Of Piping Plover Charadrius Melodus Metapopulations, Jonathan H. Plissner, Susan M. Haig

United States Geological Survey: Staff Publications

The meta-population viability analysis package, vortex, was used to examine viability and recovery objectives for piping plovers Charadrius melodus, an endangered shorebird that breeds in three distinct regions of North America. Baseline models indicate that while Atlantic Coast populations, under current management practices, are at little risk of near-term extinction, Great Plains and Great Lakes populations require 36% higher mean fecundity for a significant probability of persisting for the next 100 years. Meta-population structure (i.e. the delineation of populations within the meta-population) and inter-population dispersal rates had varying effects on model results; however, spatially-structured meta-populations exhibited lower viability than …

Aquatic Dissipation Of The Herbicide Triclopyr In Lake Minnetonka, Minnesota, Kurt D. Getsinger, David G. Petty, John D. Madsen, John G. Skogerboe, Bruce A. Houtman, William T. Haller, Alison M. Fox

United States Army Corps of Engineers, Omaha District

A study of the aquatic fate of the triethylamine salt of triclopyr (3,5,6-trichloro-2- pyridinyloxyacetic acid) was conducted in three bays of Lake Minnetonka, Minnesota. Triclopyr is under review by the US Environmental Protection Agency as a selective aquatic herbicide. The primary purpose of this study was to determine dissipation rates of the parent active ingredient, triclopyr, and its major metabolites, 3,5,6-trichloropyridinol (TCP) and 3,5,6-trichloro-2-methoxypyridine (TMP) in selected matrices including water, sediment, plants, finfish and shellfish. Two 6.5- ha plots dominated by the weedy species Eurasian watermilfoil (Myriophyllum spicatum L) were treated with triclopyr-triethylammonum at a rate of 2.5mg AE liter …

The Effects Of Light And Nitrate Levels On The Relationship Between Nitrate Reductase Activity And (No3-)-N-15 Uptake: Field Observations In The East China Sea, Chin-Chang Hung, George T. F. Wong, Kom-Kee Liu, Fuh-Kwo Shiah, Gwo-Ching Gong

OES Faculty Publications

Nitrate reductase activity (NRA) and ¹⁵NO₃- uptake (NU) were determined in the East China Sea and the adjoining Kuroshio in May 1996, at six stations covering a range of hydrographic conditions: the nutrient-rich and fresher plume of Changjiang Diluted Water along the Chinese coast, the nutrient-rich upwelling Kuroshio Subsurface Water at the shelf edge northeast of Taiwan, the oligotrophic Kuroshio Surface Water and the mixing zones among these water masses on the shelf. The values of NRA in the surface mixed layer ranged between 16 and 0.1 nM-N h^-1, whereas those of NU ranged between …

Intraspecific Variation In The Selenium Requirement Of Different Geographic Strains Of The Toxic Dinoflagellate Gymnodinium Catenatum, Martina A. Doblin, Susan I. Blackburn, Gustaaf M. Hallegraeff

OES Faculty Publications

The requirement for selenium (IV) was assessed in five strains of the toxic dinoflagellate Gymnodinium catenatum Graham, representing three populations from Tasmania (Australia), as well as one each from Japan and Spain. Strains were grown in nutrient-enriched sea water medium with 10^-9 M selenium added as selenite (H₂SeO₃), or with no added selenium, and monitored for growth and cell yield. Strains exhibited different selenium (Se) requirements, as evidenced by (i) a decrease in exponential growth rate (10-20%) and cell yield (up to 80%) (Japanese strain); (ii) a decrease in cell yield only (Tasmania Derwent Estuary …

The Usm And U.S. Navy Collaborative Effort To Establish A National Center Of Excellence In Hydrographic Science, Andre Godin, Denis A. Wiesenburg, Donald G. Redalje, Kenneth Cooper, Captain Timothy J. Mcgee, Charles West

Hydrographic Science Research Center

A new partnership in Mississippi teams the operational arm of the U.S. Navy with the state academic leader in marine science, The University of Southern Mississippi (USM), to establish a nationally unique Center For Hydrographic Excellence. The Navy brings eight of the world’s most modern survey ships, a solid core of experienced field hydrographers, and the nation’s most extensive holdings of bathymetric and hydrographic data to the partnership.  USM joins the union with a new graduate degree program in Hydrographic Science established by the Department of Marine Science at the Stennis Space Center.  This new graduate degree program, formally approved …

Bulletin 4446 - Ord Land And Water Management Plan 2000, Agriculture Western Australia, Community Of Kununurra

Bulletins 4000 -

The wise use of the land and water of the Ord has become an imperative driven by increasing awareness of the impacts of current uses on ground water and the on the quality of the Ord River itself.

We have been lucky as a community that these resources are still in reasonable order and that we have the time to address the resource management challenges associated with our use of them. There is a wide range of land and water management issues to be addressed and all those involved have responsibilities to address some of those issues.

Dalyup Catchment 2000, Esperance Catchment Support Team

Natural resources published reports

This 'State of the Dalyup Catchment' document is a snapshot of the condition of the Catchment in the year 2000. It records the current level of knowledge of the natural resources in the Catchment and discusses some of the management issues and options. This document is a benchmark and through ongoing monitoring, trends in the condition of the Catchment can be identified.

Its primary purpose is as a tool for resource planning such as a surface water management plan, river action plan or revegetation plan. It can also be used in the preparation of funding applications.

Tidally Induced Flow In Chwaka Bay Zanzibar, O U. Mwaipopo

Tanzania Journal of Science

Time series data of currents and sea current levels recorded by current meter and tide gauges, respectively from Chwaka Bay, Zanzibar were obtained from the entrance near to Mapopwe Creek and at the middle of the bay. The analysis of the data reveals that the tidal currents had an asymmetry near the entrance to Mapopwe Creek where the ebb currents were stronger than flood currents although the ebb periods were considerably longer than flood periods.

Wavelength-Specific Fluorescence Coefficients For Simulating Hyperspectral Reflectance Signatures Of Water, Charles R. Bostater, Jan Rebman

Ocean Engineering and Marine Sciences Faculty Publications

A model1'2 which describes the transfer of irradiant light in water is used to predict the fluorescence response ofthe water surface reflectance under solar induced or an artificial light source such as a laser. Formulations for the estimation of wavelength dependent fluorescent coefficients. The techniques allows the description ofa fluorescence reflectance response in deep and shallow waters with various bottom reflectance signatures such as submerged vegetation, corals and sand. Recent advances in the model are presented for obtaining wavelength dependent fluorescence spectrum responses from the solutions of the two flow equations following the procedures developed by Bostater1'2'3. Synthetic or modeled …

High-Order Derivative Spectroscopy For Selecting Spectral Regions And Channels For Remote Sensing Algorithm Development, Charles R. Bostater

Ocean Engineering and Marine Sciences Faculty Publications

A remote sensing reflectance model, which describes the transfer of irradiant light within a plant canopy or water column has previously been used to simulate the nadir viewing reflectance of vegetation canopies and leaves under solar induced or an artificial light ur'2 and the water surface reflectance3' Wavelength dependent features such as canopy reflectance leafabsorption and canopy bottom reflectance as well as water absorption and water bottom reflectance have been used to simulate or generate synthetic canopy and water surface reflectance signatures3' ' This paper describes how derivative spectroscopy can be utilized to invert the synthetic or modeled as well …

Salinity History Of Coastal Marshes Reconstructed From Diatom Remains, Michael L. Parsons, Quay Dortch, R. Eugene Turner, Nancy N. Rabalais

Faculty Publications

Sediment cores were collected from three Louisiana coastal marsh ponds, dated with radioisotopes, and analyzed for diatom remains to determine if long-term salinity changes were evident in the sediment record. A diatom-based salinity index formulated from a statistical comparison of available salinity data and changing diatom assemblages demonstrated that diatom remains appear to preserve salinity signals in coastal brackish and salt marsh environments. The salinity index was applied to sediment cores spanning the late 1600s to the 1990s and provided a more complete record of salinity than field data, which were temporally and spatially incomplete. The salinity reconstructions indicated that …

Estimating The Probability Of Severe Convective Storms: A Local Perspective For The Central And Northern Plains, Preston W. Leftwich Jr.

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

Summary and Conclusions

A procedure to estimate probabilities of the occurrence of severe convective storms within local areas has been described. Probabilities were based on a simulated climatology and the relative frequency of severe convective events when a selected site was contained within an operational Outlook or Watch. Combined data from five local areas were used to develop a general model for local probabilities within the central and northern Plains region. Attachment of probabilities to specific products placed values within a framework familiar to both forecasters and "end-users." Application of results in an operational scenario demonstrated representative local probabilities and …