Chemistry Commons^™

Towards A Comprehensive Data Infrastructure For Redox-Active Organic Molecules Targeting Nonaqueous Redox Flow Batteries, Rebekah Duke, Vinayak Bhat, Parker Sornberger, Susan A. Odom, Chad Risko

Chemistry Faculty Publications

The shift of energy production towards renewable, yet at times inconsistent, resources like solar and wind have increased the need for better energy storage solutions. An emerging energy storage technology that is highly scalable and cost-effective is the redox flow battery comprised of redox-active organic materials. Designing optimum materials for redox flow batteries involves balancing key properties such as the redox potential, stability, and solubility of the redox-active molecules. Here, we present the data-enabled discovery and design to transform liquid-based energy storage (D³TaLES) database, a curated data collection of more than 43 000 redox-active organic molecules that are …

Mapping Roles Of Active Site Residues In The Acceptor Site Of The Pa3944 Gcn5-Related N-Acetyltransferase Enzyme, Cillian Variot, Daniel Capule, Xhulio Arolli, Jackson Baumgartner, Cory T. Reidl, Charles Houseman, Miguel Ballicora, Daniel P. Becker Ph.D., Misty L. Kuhn

Chemistry: Faculty Publications and Other Works

An increased understanding of how the acceptor site in Gcn5-related N-acetyltransferase (GNAT) enzymes recognizes various substrates provides important clues for GNAT functional annotation and their use as chemical tools. In this study, we explored how the PA3944 enzyme from Pseudomonas aeruginosa recognizes three different acceptor substrates, including aspartame, NANMO, and polymyxin B, and identified acceptor residues that are critical for substrate specificity. To achieve this, we performed a series of molecular docking simulations and tested methods to identify acceptor substrate binding modes that are catalytically relevant. We found that traditional selection of best docking poses by lowest S scores …

Exploiting Natural Rna 2′-5′-Linkage In Nucleic Acid Aptamers And Dna Nanostructures, Johnsi Mathivanan

Legacy Theses & Dissertations (2009 - 2024)

Developments in chemical synthesis of nucleic acid sequences and modifications have aided in the study of biomolecular interactions and the roles of modified nucleic acids in biology, medicine, and nanotechnology. This work describes some of the aspects of such developments, from synthesis of chemically modified RNA and DNA aptamers that can bind antibiotics and metal ions to the use of nucleic acids with novel backbone linkages in the construction of nanostructures. Analysis of such nucleic acid structures inform us on the basic structure of these molecules and the resulting functions that are applicable in fields such as biosensing, drug screening …

Novel Applications Of Enhanced Raman Spectroscopy For Drug Discovery, Mrna Vaccine Stability Assessment, And Forensic Purposes, Lamyaa M. Almehmadi

Legacy Theses & Dissertations (2009 - 2024)

The main focus of this dissertation was to apply enhanced Raman spectroscopy techniques to a variety of applications, ranging from drug discovery, mRNA vaccine stability, to forensic analysis. There are five chapters in this dissertation. The first chapter discusses the basics of enhanced Raman spectroscopy techniques and their relevance. The second chapter is focused on the use of surface-enhanced Raman spectroscopy (SERS) for drug discovery. The third chapter introduces the use of deep ultraviolet resonance Raman (DUVRR) spectroscopy for the detection of mRNA degradation in a mRNA vaccine model. The fourth chapter introduces the use of stand-off Raman spectroscopy in …

Distinguishing Between Living And Dead Plant Material From The Red Spruce Using Atr Ft-Ir Spectroscopy, Bailey Ann Hoplight

Legacy Theses & Dissertations (2009 - 2024)

Spectroscopic methods have recently been used to analyze plant species and maturation. However, there is a lack of research into employing spectroscopy for distinguishing living plant material and dead plant material, which is important for the agriculture and environmental health fields. Here in this study, we have shown the potential of ATR-FT IR (Attenuated total reflectance Fourier transformed infrared spectroscopy) to classify plant materials as living or dead through the help of multivariate statistical analysis methods. Plant samples were from the roots and needles of picea rubens, more commonly known as the red spruce tree. The samples were classified by …

Band Gap Engineering In Ternary Oxides And Sulfides: A Route To New Photoelectrodes For Solar Energy Conversion, Fahad Ibrahim Danladi

Chemistry & Biochemistry Dissertations - Archive

In recent years, there has been a growing interest in semiconductor photoelectrodes that can effectively split water into hydrogen and oxygen using sunlight. However, there is currently no known material that is efficient enough to be used for commercial purposes. Photoelectrodes currently have an efficiency of less than 10% in converting water under visible light irradiation. There is a need to develop an efficient semiconductor photoelectrode for photoelectrochemical water splitting that is both chemically stable and affordable, composed of earth-abundant elements and capable of operating under visible light. Metal oxides are considered promising photoelectrode materials due to their low cost, …

Crystal Structure Of A (Carboxymethyl) Triethylazanium Bromide–2-(Triethylazaniumyl) Acetate (1/1) Hydrogen-Bonded Dimer, Faith M. Carlson, Richard J. Staples, Shannon Biros

Open Access Publishing Support Funded Articles

The title compound, C₈H₁₈NO₂⁺·Br⁻·C₈H₁₇NO₂, crystallizes as the bromide salt of a 50:50 mixture of (tri­ethyl­azaniumyl)­carb­oxy­lic acid and the zwitterionic (tri­ethyl­azaniumyl)­carboxyl­ate. The two organic entities are linked by a half-occupied bridging carb­oxy­lic acid hydrogen atom that is hydrogen-bonded to the carboxyl­ate group of the second mol­ecule. The tetra­lkyl­ammonium group adopts a nearly perfect tetra­hedral shape around the nitro­gen atom with bond lengths that agree with known values. The carb­oxy­lic acid/carboxyl­ate group is oriented anti to one of the ethyl groups on the ammonium group, and the …

Healthcare Built Environment And The Covid-19 Pandemic, A Mixed-Method Study, Mohammad Saleh Nikooopayan Tak

All Theses

The outbreak of COVID-19 presented an unparalleled risk to public health, leading to urgent scientific efforts in understanding transmission mechanisms and mitigating risks, especially in healthcare settings. This mixed-methods study examines knowledge advancement regarding indoor air quality in healthcare facilities during the pandemic. A systematic literature review of 163 post-COVID studies identifies key research thrusts and 31 recommendations related to building ventilation, air filtration, surface disinfection, and monitoring. Comparison with over 200 pre-pandemic publications reveals both reliance on established infection control principles and unique contributions, such as detecting viral RNA in air and surface samples indicating potential airborne and fomite …

Resistive And Capacitive Behavior In Self-Healing Poly(Ionic Liquid) Copolymers, Jaylan Fraser-Mines

All Theses

This thesis elucidates the origin of molecular events during the damage-repair cycle in a new class of copolymers composed of ionic liquids (ILs) and acrylic-based monomers. In these studies, (1-[(2-methacryloyloxy)ethyl]-3- butylimidazolium bis(trifluoromethyl-sulfonyl)imide) (MEBIm-TFSI) was copolymerized with methyl methacrylate (MMA) and n-butyl acrylate (nBA) to form poly((1-[(2-methacryloyloxy)ethyl]-3- butylimidazolium bis(trifluoromethyl-sulfonyl)imide)-co-methyl methacrylate-co-n butyl acrylate) (p(MEBIm-TFSI/MMA/nBA)) and its mechanical and electrical properties were examined. Following the introduction to this work, Chapter 1 provides an overview of the continuously growing field of ILs and focuses on the structure-property relationships between ILs and their properties as single molecules and monomers in poly(ionic liquid)s (PILs). Chapter 2 …

Characterization Of Mechanically Recycled Polylactic Acid (Pla) Filament For 3d-Printing By Evaluating Mechanical, Thermal, And Chemical Properties And Process Performance, Mahsa Shabani Samghabady

All Theses

Polylactic acid (PLA) is a biopolymer made from renewable resources such as sugar and corn. PLA filament is a popular material used in Fused Deposition Modeling (FDM) 3D-printing. While this material has many advantages, all the failed parts, support structures, rafts, nozzle tests, and the many prototype iterations during the 3D-printing process contribute to the plastic pollution and release of greenhouse gases. Although PLA is biodegradable, it can take years to degrade in landfills. Instead of throwing away PLA waste and buying new filaments, PLA can be recycled. Amongst the different recycling technologies, mechanical recycling is the most environmentally friendly. …

Studying The Stability Of Collagen/Heparin Coatings To Be Used In Cell Therapy Applications, Gavin Mussino

Biological Sciences Undergraduate Honors Theses

This honors thesis aims to investigate the reusability and performance of cell coatings for cell therapy applications. Cell therapy, which involves the use of human cells to repair or replace damaged tissues, holds immense potential for medical advancements. However, ensuring the survival and functionality of transplanted cells remains a significant challenge. We focused on studying the effectiveness of coatings applied to cells for improved cell growth and viability. The research project involved the preparation of the coatings using a layer-by-layer method and the subsequent seeding of cells. The coated cells were then subjected to a series of experiments to assess …

Probing The Mechanism Of Dna Protein Crosslink Formation By Aziridinomitosenes Through The Selective Precipitation Of Protein Salts, Michael Blair

Boise State University Theses and Dissertations

Aziridinomitosenes are synthetic chemotherapeutic agents that are analogs of Mitomycin C, as well as other mitomycins. They are known for their ability to form DNA interstrand cross-links (ICLs), and more recently have been observed to form DNA-protein cross-links (DPCs). In this work, three synthetic aziridinomitsenes were prepared and studied to better understand the role of the C6 and C7 positions in the formation of DNA-protein cross-links. In addition, two separate methods, the advanced recovery of K-SDS precipitates and the K-SDS assays were utilized and compared to assess the advancements in the analysis of DPC formation. H AZM, C6 AZM, Dimethyl …

Integrating Sensor Development, Risk Assessment, And Community Engagement To Support Environmental Justice In The Rural Community Of El Tiple, Colombia, David Bahamon Pinzon

All Dissertations

In Colombia, ethnic communities have traditionally been responsible stewards of natural resources. They recognize the importance of these resources for their livelihood, as well as their ancestral and cultural heritage. El Tiple, a rural Afro-Colombian community, has been affected by the incursion of private corporations that promoted the expansion of sugarcane monocrops in their territory. Since the introduction of the monoculture industry, local freshwater sources have been depleted due to intensive water use for irrigation of the sugarcane crops. Additionally, the intensive usage of agrochemicals has been linked with loss of native flora, damages to family farms, and pollution of …

Phase Distribution Of Nickel, Chromium, And Cobalt In Seawater At Olivine-Enriched Beaches: Implications For Carbon Capture By Enhanced Silicate Weathering, Nathaniel J. Padrnos

Master's Theses

The application of olivine to coastal areas is a proposed method of removing carbon dioxide from the atmosphere for climate change mitigation. Olivine is abundant and dissolves relatively fast, but it contains trace amounts of nickel (Ni), chromium (Cr), and cobalt (Co) which may be toxic to marine biota in cases of widespread coastal olivine spreading. Prior studies have suggested that Ni concentrations in marine sediments and/or the overlying water column due to olivine dissolution could be a limiting factor for its carbon capture potential. Therefore, it is critical to understand and model the processes affecting trace metal bioavailability after …

Synthesis And Reactivity Of Heteroatom Embedded Cycloalkynes In Spaac, Nickel Catalyzed Alkylarylation Of Alkenes, And Carbofluorination Of Alkynes, Namrata Khanal

Chemistry and Chemical Biology ETDs

Part I covers Chapters 1, 2, and 3

cycloaddition reactions, that is utilized in biorthogonal chemistry. This metal free version The strain promoted azide-alkyne cycloaddition (SPAAC) reaction is one of the popular 1,3-dipolar of click reaction offers advantage over copper catalyzed click reaction. Since it eliminates the use of copper that is toxic to cells, it is considered favorable for biocompatible reaction. Due to the increased reactivity with dipoles without the use of metal catalyst, cycloalkynes, in particular cyclooctynes, have been employed as the biorthogonal reagent in biorthogonal chemical reaction for the study of a biological processes in vivo. The …

Indium Doped Zinc Stannate-Pdms Based Piezoelectric Generator For Harvesting Mechanical Energy And Sensory Application, Tamanna Zakia

Theses and Dissertations

Piezoelectric materials are comparatively new among other alternative energy sources. Harvesting waste mechanical energy through these materials can be a potential solution of the increasing energy demand. In response to applied mechanical stress, piezoelectric materials accumulate electric charges on their surface. Upon connecting with a circuit, accumulated charges can flow and generate electricity. Based on this hypothesis piezoelectric nano-generator has been fabricated. Binary semiconducting oxides such as ZnO, TiO2 and SnO2 have attracted immense interest as they have unique properties of electron mobility. However, there is always a need for specially designed semiconductors to better match with the properties. This …

Phosphatase And Pseudo-Phosphatase Functions Of Phosphatase Of Regenerating Liver 3 (Prl-3) Are Insensitive To Divalent Metals In Vitro, Jeffery T. Jolly, Ty C. Cheatham, Jessica S. Blackburn

Markey Cancer Center Faculty Publications

Phosphatase of regenerating liver 3 (PRL-3) is associated with cancer metastasis and has been shown to interact with the cyclin and CBS domain divalent metal cation transport mediator (CNNM) family of proteins to regulate the intracellular concentration of magnesium and other divalent metals. Despite PRL-3’s importance in cancer, factors that regulate PRL-3’s phosphatase activity and its interactions with CNNM proteins remain unknown. Here, we show that divalent metal ions, including magnesium, calcium, and manganese, have no impact on PRL-3’s structure, stability, phosphatase activity, or CNNM binding capacity, indicating that PRL-3 does not act as a metal sensor, despite its interaction …

Structures Of The Insecticidal Toxin Complex Subunit Xpta2 Highlight Roles For Flexible Domains, Cole L. Martin, David W. Chester, Christopher D. Radka, Lurong Pan, Zhengrong Yang, Rachel C. Hart, Elad M. Binshtein, Zhao Wang, Lisa Nagy, Lawrence J. Delucas, Stephen G. Aller

Markey Cancer Center Faculty Publications

The Toxin Complex (Tc) superfamily consists of toxin translocases that contribute to the targeting, delivery, and cytotoxicity of certain pathogenic Gram-negative bacteria. Membrane receptor targeting is driven by the A-subunit (TcA), which comprises IgG-like receptor binding domains (RBDs) at the surface. To better understand XptA2, an insect specific TcA secreted by the symbiont X. nematophilus from the intestine of entomopathogenic nematodes, we determined structures by X-ray crystallography and cryo-EM. Contrary to a previous report, XptA2 is pentameric. RBD-B exhibits an indentation from crystal packing that indicates loose association with the shell and a hotspot for possible receptor binding or a …

Aerosol Mutagenicity In San Bernardino, California Via Bacterial Fluctuation Tests, Sean Murphy

Electronic Theses, Projects, and Dissertations

San Bernardino, California’s poor air quality is a health risk to its population with some of the highest concentrations of ozone and aerosol in the United States. Aerosols are solid or liquid particles suspended in the air. Smaller aerosol particles are the most harmful as they are more likely to penetrate further into the respiratory system. These aerosols can cause respiratory issues and contain toxic compounds. One measure of aerosol toxicity is to study the mutagenicity of the aerosol. To study the mutagenicity of aerosol samples collected in San Bernardino in 2022, fluctuation tests (based on the Ames test for …

Composite And Polymer Formulation Employing Sulfur And Bio-Olefin Feedstocks, Claudia V. Lopez

All Dissertations

Environmental sustainability represents a challenge for society since industrial growth has a direct impact on natural resources and waste production. New technologies that effectively incorporate waste into renewable resources are critical to the development of a sustainable and circular economy. The manufacturing of structural materials like Portland cement (OPC) is responsible for >8% of the global anthropogenic emissions of carbon dioxide, with ~ 1 kg of CO₂ released to the atmosphere for every kilogram of OPC produced. For instance, the development of sustainable structural materials is a key factor to reduce the greenhouse emissions and to attenuate the climate …

Organocatalyzed Four-Component On-Water Green Synthesis Of Spiroindolinpyranopyrazole, Tanzida Zubair

Theses and Dissertations

Although many synthetic and natural pharmaceuticals and drug-like compounds contain spiro center(s) in their structures, the synthesis of spiro centers is seen to be an exciting and difficult area of research. The synthesis of spiro compounds and their derivatives was carried out using a four-component process that included reagents like hydrazine hydrate, isatin, malononitrile, and an active methylene compound like ethyl acetoacetate. Microwave irradiation was used in a short time range (5 – 30 min) and moderate temperature (80°C), with water as a solvent, and N, N-Diisopropylethylamine (DIPEA) as a catalyst to give high yield of products. Our process complies …

Electrochemical Approaches To Life-Support Resources In Space Missions And Nuclear Technologies: Hydrogen Peroxide And Uranium Films, Armando Manuel Pena-Duarte

Open Access Theses & Dissertations

Space race has developed several technological advances that have achieved and continue to achieve the success of space missions in the aerospace timeline. Currently, the number of space technical and scientific innovations is still growing––demanding new materials and developments for extreme performing applications of fuel cells, batteries, supercapacitors, and systems of nuclear energy. Space missions require life-support solutions, auto-sustainable closed-loop living environments, cleaning and sanitizing solutions against pathogens, and safe nuclear-based resources of energy––with fissile materials with well-controlled dimensions within the core fuel elements. Likewise, to guarantee safety conditions, reduce costs, and facilitate operational logistics, space missions must reduce their …

Removal Of Nonylphenols From Water And Wastewater Using Alginate-Activated Carbon Beads, Angelica Araly Chacon

Open Access Theses & Dissertations

The presence of contaminants of emerging concern (CECs) have been affecting water quality in recent years. The United States Environmental Protection Agency (U.S EPA) defines CECs as toxic chemicals without regulatory status and with adversely impact on the wildlife and people. Among the CECs, nonylphenols (NPs) are frequently found in all water systems and are categorized as endocrine-disrupting compounds (EDCs) due to their ability to mimic hormones causing reproductive and developmental effects in humans and animals. The main sources of discharge and distribution of NPs into the environment are wastewater treatment plants (WWTPs) which are not designed to remove them. …

Poly(Ionic Liquid)S For Magnetic, Ionic, And Electrical Stimuli-Responsive Applications, Kayla Ann Foley

Graduate Theses and Dissertations

Poly(ionic liquid)s (PILs) are a fascinating subclass of strong polyelectrolytes formed from polymerizable ionic liquids. As a result of their unique properties and counterion exchangeability, PILs can exhibit conformation structure or material property changes in response to external stimuli such as changes in pH/ionic environment, magnetic fields, and electric potentials. In Chapter 1, a comprehensive review of PILs design as well as their stimuli-responsive behavior is provided. Additional motivation for each dissertation chapter is also discussed. In Chapter 2, magnetically responsive PILs (MPILs) are developed from complexing paramagnetic salts with a random PIL copolymer containing a metal-coordinating co-monomer, acrylamide. A …

Intra-Gendered Perceptions And Adoption Of Climate-Smart Agriculture: Evidence From Smallholder Farmers In The Upper East Region Of Ghana, Kwabena Antwi, Philip Antwi-Agyei

Student Publications [Scholarly]

Climate-smart agriculture (CSA) remains a key strategy for sustaining agricultural systems and achieving food security and nutrition. Despite this, uncertainty remains on how intra-gendered dynamics influence its adoption in dryland farming systems. This study implements both quantitative and qualitative approaches including household surveys, key informant interviews, and focus group discussions to explore how intra-gender dynamics shape the perceptions and adoption of climate-smart agriculture in three selected communities (Katanga, Dakio, and Zonno) in the Bolgatanga East District of the Upper East Region of Ghana. Specifically, the study answers the following research questions: (i) What is the degree of change in rainfall …

Next-Generation Nanopore Sensors Based On Conductive Pulse Sensing For Enhanced Detection Of Nanoparticles, Samuel Confederat, Seungheon Lee, Derr Vang, Dimitrios Soulias, Fabio Marcuccio, Timotheus I. Peace, Martin Andrew Edwards, Pietro Strobbia, Devleena Samanta, Christoph Wälti, Paolo Actis

Chemistry & Biochemistry Faculty Publications and Presentations

Nanopore sensing has been successfully used to characterize biological molecules with single-molecule resolution based on the resistive pulse sensing approach. However, its use in nanoparticle characterization has been constrained by the need to tailor the nanopore aperture size to the size of the analyte, precluding the analysis of heterogeneous samples. Additionally, nanopore sensors often require the use of high salt concentrations to improve the signal-to-noise ratio, which further limits their ability to study a wide range of nanoparticles that are unstable at high ionic strength. Here, a new paradigm in nanopore research that takes advantage of a polymer electrolyte system …

The Influence Of Allostery Governing The Changes In Protein Dynamics Upon Substitution, Joseph Hess

All Dissertations

The focus of this research is to investigate the effects of allostery on the function/activity of an enzyme, human immunodeficiency virus type 1 (HIV-1) protease, using well-defined statistical analyses of the dynamic changes of the protein and variants with unique single point substitutions ¹. The experimental data¹ evaluated here only characterized HIV-1 protease with one of its potential target substrates. Probing the dynamic interactions of the residues of an enzyme and its variants can offer insight of the developmental importance for allosteric signaling and their connection to a protein’s function. The realignment of the secondary structure elements can …

Synthesis And Characterization Of Cobalt(Iii) Complexes And A Vanadium(Iv) Complex With Flavonoids As Ligands, Ethan Schroeder

Chemistry & Biochemistry Theses & Dissertations

For many years now, transition metal complexes have been used as favorable additional chemotherapeutic approaches to medicine that were previously unexplored in the literature. One well-known chemotherapeutic drug, cisplatin, has been applied, but is limited in use due to its toxicity to the cells and its undesirable side effects to humans. Newly developed cobalt-based complexes with ligands known as flavonoids are being used to fight cancer. Flavonoids, compounds mainly found in fruits and vegetables, are shown to have antioxidative and anticancer properties. Use of flavonoids as ligands in transition metal complexes, e.g., those with a Ru(II) metal center, have been …

Dual Ni/Co-Hemin Metal-Organic Framework-Prgo For High-Performance Asymmetric Hybrid Supercapacitor, Kimia Zarean Mousaabadi, Ali A. Ensafi, Erfan Naghsh, Jin-Song Hu, Behzad Rezaei

Chemistry & Biochemistry Faculty Publications and Presentations

In this study, we conducted direct synthesis of a dual metal–organic framework (Ni/Co-Hemin MOF) on phosphorous-doped reduced graphene oxide (PrGO) to serve as an active material in high-performance asymmetrical supercapacitors. The nanocomposite was utilized as an active material in supercapacitors, exhibiting a noteworthy specific capacitance of 963 C g⁻¹ at 1.0 A g⁻¹, along with a high rate capability of 68.3% upon increasing the current density by 20 times, and superior cycling stability. Our comprehensive characterization and control experiments indicated that the improved performance can be attributed to the combined effect of the dual MOF and the …

Differential Membrane Binding Of Α/Β-Peptide Foldamers: Implications For Cellular Delivery And Mitochondrial Targeting, Tzong-Hsien Lee, James W. Checco, Tess Malcolm, Chelcie H. Eller, Ronald T. Raines, Samuel H. Gellman, Erinna F. Lee, W. Douglas Fairlie, Marie-Isabel Aguilar

Department of Chemistry: Faculty Publications

The intrinsic pathway of apoptosis is regulated by the Bcl-2 family of proteins. Inhibition of the anti-apoptotic members represents a strategy to induce apoptotic cell death in cancer cells. We have measured the membrane binding properties of a series of peptides, including modified α/β-peptides, designed to exhibit enhanced membrane permeability to allow cell entry and improved access for engagement of Bcl-2 family members. The peptide cargo is based on the pro-apoptotic protein Bim, which interacts with all anti-apoptotic proteins to initiate apoptosis. The α/β-peptides contained cyclic β-amino acid residues designed to increase their stability and membrane-permeability. Dual polarisation interferometry was …