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Articles 1 - 30 of 3980
Full-Text Articles in Chemistry
The Structure And Regulatory Mechanism Of The Emrb Rna Motif In Lactobacillus Acidophilus, Isabella J. Mezzenga, Brian M. Lee
The Structure And Regulatory Mechanism Of The Emrb Rna Motif In Lactobacillus Acidophilus, Isabella J. Mezzenga, Brian M. Lee
Journal of the South Carolina Academy of Science
Major facilitator superfamily (MFS) transporters aid bacteria in expelling toxic compounds such as antibiotics, bile acids, and other substances. Previous bioinformatic studies identified the emrB motif as a potential regulatory RNA element. In Lactobacillus, this RNA motif is generally found in the intergenic region upstream of an MFS transporter gene with homology to the emrB gene from Escherichia coli. Secondary structure predictions of the intergenic region were used to define the structural features of this RNA motif. The emrB motif comprises two hairpins, though inclusion of neighboring regions is predicted to stabilize alternative secondary structures. A potential rho independent terminator …
Development And Validation Of An Ai-Assisted Eco-Batik Gringsing Student Worksheet, Intan Kurniawati, Arif Widiyatmoko, Bambang Subali 5, Novi Ratna Dewi
Development And Validation Of An Ai-Assisted Eco-Batik Gringsing Student Worksheet, Intan Kurniawati, Arif Widiyatmoko, Bambang Subali 5, Novi Ratna Dewi
Jurnal Pendidikan dan Pembelajaran
Background: Science literacy among Indonesian students remains low, indicating a need for contextual learning resources that connect scientific concepts with students’ environments. Local cultural heritage such as Batik Gringsing, combined with artificial intelligence (AI) as a supporting tool, offers a promising context, yet their integration in a single student worksheet remains underexplored.
Objectives: This study aimed to develop and validate an AI-assisted Eco-Batik Gringsing student worksheet for science learning.
Methods: The study employed a research and development (R&D) approach adapted from the 4D model, covering the Define, Design, and Develop stages. The evaluation focused on the validity and practicality of …
Autofield-Poa: A Hybrid Automl–Metaheuristic Framework For Automated Feature Selection In Recommender Systems, Mohammed Dheyaaldeen Taha, Waleed Kareem Ahmed, Rana Saad Mohammed, Zied O. Ahmed
Autofield-Poa: A Hybrid Automl–Metaheuristic Framework For Automated Feature Selection In Recommender Systems, Mohammed Dheyaaldeen Taha, Waleed Kareem Ahmed, Rana Saad Mohammed, Zied O. Ahmed
Karbala International Journal of Modern Science
The problem of automated feature selection is one of the most important aspects of modern recommender systems, as overestimating the number of feature fields used, which can increase model complexity, inference latency, and performance degradation due to redundancy and noise. Although differentiable Automated Machine Learning (AutoML) based feature selection methods, including AutoField, are effective, they remain susceptible to initialization and local optima. Conversely, population-based metaheuristic algorithms are effective at global exploration, but are often inefficient in high-dimensional discrete spaces when randomly initialized. This paper presents AutoField-POA, a hybrid AutoML-metaheuristic framework that combines a differentiable controller with the Pelican Optimization Algorithm …
A Yolov8x Framework For Breast Lesion Localization Using Real-World Mammographic Images, Hadeel Abdul Majeed Ghazi, Yarub Alazzawi, Hussein Hasan Nsaif
A Yolov8x Framework For Breast Lesion Localization Using Real-World Mammographic Images, Hadeel Abdul Majeed Ghazi, Yarub Alazzawi, Hussein Hasan Nsaif
Karbala International Journal of Modern Science
Breast cancer is one of the leading causes of mortality among women worldwide, and early and accurate mammographic assessment is important for timely diagnosis and improved patient survival. However, accurate breast lesion detection requires overcoming the issues of low lesion contrast, dense breast tissue, image noise, and variation in mammographic acquisition. In this study, we present a YOLOv8x-based computer-aided detection framework for automated breast lesion localization in full-field digital mammography (FFDM) and digital breast tomosynthesis (DBT) images acquired under heterogeneous clinical conditions. The framework was developed and evaluated using 501 clinical mammographic images obtained from multiple mammography systems, namely GE …
An Object-Level Semantic Video Transmission Framework For Iomt Based On Lightweight Yolo And Motion Triggering, Iman Kadhum Abbood, Alaa Shawqi Jaber
An Object-Level Semantic Video Transmission Framework For Iomt Based On Lightweight Yolo And Motion Triggering, Iman Kadhum Abbood, Alaa Shawqi Jaber
Karbala International Journal of Modern Science
In Internet of Multimedia Things (IoMT) environments, video capture and frame transmission consume substantial sensor energy and impose considerable network overhead because of redundant data transmission. Traditional approaches often rely on repeated pixel-level operations and frequent execution of deep segmentation models, thereby increasing computational and transmission costs. This paper proposes an Object-Level Semantic Video Transmission Framework (OSVT) for resource-constrained IoMT environments in which high-definition visual data must be transmitted over low-bandwidth wireless multimedia sensor networks (WMSNs). The proposed OSVT incorporates a dual-stage wake-up mechanism that remains in sleep mode during static scenes, thereby reducing transmission load. The high-power YOLOv11-seg module …
Calculation Of Alpha-Decay Half-Lives Using A Numerical Approach, Daniel Suescún-Díaz, Rosemberg Gómez-Noguera, Diego Rasero-Causil
Calculation Of Alpha-Decay Half-Lives Using A Numerical Approach, Daniel Suescún-Díaz, Rosemberg Gómez-Noguera, Diego Rasero-Causil
Karbala International Journal of Modern Science
This study introduces a numerical approach for estimating alpha-decay half-lives of alpha-emitting nuclei using a modified five-parameter Woods-Saxon potential. The radial Schrödinger equation is solved with the Numerov method to calculate the wave function and the barrier transmission probability, without relying exclusively on the WKB approximation. The calculations were performed for 398 nuclides taken from the NUBASE2020 database. Of these, 264 nuclides were used for the MWS5 parameter-adjustment stage, whereas the remaining 134 nuclides were reserved for an independent evaluation of the model. The results were compared with those obtained from two reference models: the modified Gamow-Like Model (MGLM) and …
Antioxidant, Anti-Tyrosinase, Anti-Elastase, And Anti-Collagenase Activities Of Propolis Extracts From The Stingless Bee Tetragonula Laeviceps (Smith, 1857), Tri Hadi Handayani, Dimas Andrianto, Sih Kahono, Pamungkas Rizki Ferdian, Raden Lia Rahadian Amalia, Muhamad Ridwan
Antioxidant, Anti-Tyrosinase, Anti-Elastase, And Anti-Collagenase Activities Of Propolis Extracts From The Stingless Bee Tetragonula Laeviceps (Smith, 1857), Tri Hadi Handayani, Dimas Andrianto, Sih Kahono, Pamungkas Rizki Ferdian, Raden Lia Rahadian Amalia, Muhamad Ridwan
Karbala International Journal of Modern Science
Stingless bees incorporate propolis into their nest as a structural and protective material. Information remains limited on how solvent fractionation affects the antioxidant and enzyme-inhibitory activities of propolis produced by Indo nesian Tetragonula laeviceps. This study examined a crude extract prepared with 70% ethanol together with the n- hexane, ethyl acetate, and water fractions obtained from it. The analysis comprised total phenolic content (TPC), total flavonoid content (TFC), three antioxidant assays (ABTS, CUPRAC, TBARS), and inhibition of tyrosinase, elastase, and collagenase. The largest TPC and TFC values were obtained from the ethyl acetate fraction, at 85.93 ± 1.28 mg GAE/g …
Development Of Gluten-Free Cookies Produced From Blends Of Chickpea Flour And Soybean Flour With Rice Flour, Cao Thi Bich Thao, Diana Widiastuti, Chau Minh Thuan, Nguyen Ngoc Thanh Tien, Pham Van Hung
Development Of Gluten-Free Cookies Produced From Blends Of Chickpea Flour And Soybean Flour With Rice Flour, Cao Thi Bich Thao, Diana Widiastuti, Chau Minh Thuan, Nguyen Ngoc Thanh Tien, Pham Van Hung
Chimica et Natura Acta
The incorporation of chickpea and soybean flours may improve the nutritional quality of gluten-free cookies, particularly their protein and resistant starch contents. This study investigated the effects of various levels of chickpea or soybean flour (10%, 30%, and 50% w/w) substituted to rice flour on the physicochemical and pasting properties of composite flours, and cookie quality, resistant starch, and sensory properties of gluten-free cookies were evaluated. Proximate analysis revealed that fortification increased the protein from 6.8% to 22.36% in the composite flours. The composite flours showed lower swelling index and higher water absorption capacity than rice flour and both peak …
Radiological And Chemical Safety Assessment Of Drinking Water From Treatment Plants And Rivers In Kut City, Iraq, Ahmed A. Alswaty, Hadi D. Alattabi
Radiological And Chemical Safety Assessment Of Drinking Water From Treatment Plants And Rivers In Kut City, Iraq, Ahmed A. Alswaty, Hadi D. Alattabi
Karbala International Journal of Modern Science
Climate change and increasing anthropogenic activities, particularly wastewater discharge into rivers, have raised pollution levels in the water sources of Kut City, necessitating an assessment of the radiological and chemical safety of drinking water at the city's treatment plants. Thirteen water samples were collected, comprising ten treated and three raw water samples from the source rivers. An HPGe detector was used to measure the radionuclides 214Bi, 214Pb, 212Bi, 212Pb, 40K, and 137Cs. All measured radionuclides were below the minimum detectable activity (MDA). ICP-OES analysis supported these findings, as U concentrations in most samples were …
Implementation Of The Problem-Based Learning Model On The Topic Of The Immune System To Enhance The Critical Thinking Skills Of Grade Xi B Students At Sman 1 Tojo, Nani Sofyanti, Sutrisnawati Sutrisnawati, Vita Indri Febriani, Mohammad Jamhari, Bustamin Bustamin, Raya Agni
Implementation Of The Problem-Based Learning Model On The Topic Of The Immune System To Enhance The Critical Thinking Skills Of Grade Xi B Students At Sman 1 Tojo, Nani Sofyanti, Sutrisnawati Sutrisnawati, Vita Indri Febriani, Mohammad Jamhari, Bustamin Bustamin, Raya Agni
Jurnal Pendidikan Sains
Critical-thinking skills are essential competencies for students in 21st-century learning. Preliminary classroom observations in Class XI B at SMAN 1 Tojo indicated that instruction remained predominantly teacher-centered and provided limited opportunities for students to engage in activities involving interpretation, analysis, evaluation, and inference. This study aimed to improve students’ critical-thinking skills through the implementation of Problem-Based Learning (PBL) on the immune system topic. The study employed a Classroom Action Research (CAR) design conducted over two cycles, involving 28 students in Class XI B. Data were collected using a teacher activity observation sheet and critical-thinking skills tests assessing four indicators: interpretation, …
Enantioselectivity Of The Photochemical Continuous-Flow Isomerization Of Humulones, Gregory M. Giovine, Trevor Smith, Bruce Hamper
Enantioselectivity Of The Photochemical Continuous-Flow Isomerization Of Humulones, Gregory M. Giovine, Trevor Smith, Bruce Hamper
Undergraduate Research Symposium
Humulones, the primary natural product present in the historically significant hop flower, represent a largely unexplored candidate for structure-based pharmaceutical design. Showing promising biological activity as an anti-bacterial and anti-inflammatory agent, humulones are of interest both for their bioactive properties and for their long-established tolerability and natural abundance. Humulones undergo a characteristic isomerization reaction, where the six-membered substituted phloroglucinol ring contracts to a five-membered ring isohumulone, under a variety of conditions, including those enabled by brewing conditions (thermal, metal-catalyzed) and by exposure to UV light. Optimization of the photocatalyzed isomerization of n-humulone to n-isohumulone in flow conditions resulted in a …
The Use Of Gadgets And Learning Motivation Among Grade Xi Students In Biology Learning At Sma Negeri 5 Palu, Yulia Citra, Mohammad Jamhari, Masrianih Masrianih, Lestari M.P Alibasyah, Mursito S. Bialangi, Yulia Windarsih
The Use Of Gadgets And Learning Motivation Among Grade Xi Students In Biology Learning At Sma Negeri 5 Palu, Yulia Citra, Mohammad Jamhari, Masrianih Masrianih, Lestari M.P Alibasyah, Mursito S. Bialangi, Yulia Windarsih
Jurnal Pendidikan Sains
This study aims to describe the profile of gadget use and learning motivation among Grade XI students in biology learning at SMA Negeri 5 Palu and to explore students’ and teachers’ experiences of gadgets as learning support tools and potential sources of digital distraction. A qualitative descriptive design was employed, supported by descriptive questionnaire profiling. A total of 74 students completed a 50-item questionnaire on gadget use and learning motivation, while 10 students and two biology teachers participated in semi-structured interviews. Questionnaire data were analyzed using frequencies and percentages, while interview data were analyzed thematically. The descriptive findings showed that …
The Application Of The Group Investigation (Gi) Model Of Cooperative Learning To Improve Students’ Understanding Of Biodiversity In Year 10 At Sman 2 Mori Atas, Nadia Rosmita Lumako, Mohammad Jamhari, Yulia Windarsih, Lilies Lilies, Rafiqa Rafiqa, Amalia Buntu
The Application Of The Group Investigation (Gi) Model Of Cooperative Learning To Improve Students’ Understanding Of Biodiversity In Year 10 At Sman 2 Mori Atas, Nadia Rosmita Lumako, Mohammad Jamhari, Yulia Windarsih, Lilies Lilies, Rafiqa Rafiqa, Amalia Buntu
Jurnal Pendidikan Sains
Biology instruction at SMAN 2 Mori Atas was predominantly conducted through conventional teaching practices. Preliminary observations revealed that students had difficulty understanding biodiversity concepts, and several students did not meet the minimum passing criterion of 70. These conditions highlighted the need for learning activities that promote active investigation, discussion, and conceptual connections. This classroom action research examined the use of the Group Investigation (GI) cooperative learning model to improve Grade 10 students’ classroom engagement and conceptual understanding of biodiversity, as assessed through Higher-Order Thinking Skills (HOTS) questions based on the Structure of Observed Learning Outcomes (SOLO) taxonomy. The study involved …
The Effect Of The Problem-Based Learning Model On Biology Learning Outcomes In The 8th Grade Science Class At Smp Negeri 19 Palu, Delfi Srieviyani, Mursito S. Bialangi, Masrianih Masrianih, Abd Hakim Laenggeng, Vita Indri Febriani, Bustamin Bustamin
The Effect Of The Problem-Based Learning Model On Biology Learning Outcomes In The 8th Grade Science Class At Smp Negeri 19 Palu, Delfi Srieviyani, Mursito S. Bialangi, Masrianih Masrianih, Abd Hakim Laenggeng, Vita Indri Febriani, Bustamin Bustamin
Jurnal Pendidikan Sains
Research background: The low student achievement in biology at SMP Negeri 19 Palu specifically regarding the human respiratory system is attributed to the conventional teaching methods still employed by teachers. Purpose and scope of the article: This study examines the effect of the Problem-Based Learning (PBL) model on students’ learning outcomes in biology, specifically regarding the human respiratory system. Method: This study used a quasi-experimental design with a quantitative approach. The research design employed was a nonequivalent control group design using two groups: an experimental group (Class VIII D) consisting of 25 students who received the PBL model, and a …
Evaluation Of Carcinogenic Contaminants (Nitrates, Ammonium, Bromates, And Chloroform) In Baghdad Drinking Water And Their Removal Using Orange Peel Powder As A Bio Sorbent, Estabraq Ali Hameed, Hiba N. Sami, Eman Waleed Hayder
Evaluation Of Carcinogenic Contaminants (Nitrates, Ammonium, Bromates, And Chloroform) In Baghdad Drinking Water And Their Removal Using Orange Peel Powder As A Bio Sorbent, Estabraq Ali Hameed, Hiba N. Sami, Eman Waleed Hayder
Karbala International Journal of Modern Science
The present study was carried out for six months to detect the presence of some important chemical contaminants (bromate, nitrate, chloroform, and ammonium) in the drinking water of Baghdad at ten sampling sites. The study suggested the use of orange peel powder (OPP) as a cheap and eco-friendly biosorbent. X-ray diffraction (XRD) was used to confirm the amorphous nature, surface and structural characteristics of OPP. Further, SEM investigation also showed very microporous surface. FTIR (Fourier Transform Infra-Red Spectroscopy) analysis confirmed the presence of active carboxyl (-COOH) and hydroxyl (-OH) binding sites. Baseline studies show that the levels of nitrate and …
Nontarget Analysis Of The Volatile And Semivolatile Chemical Profile Of Wildland Firefighter Gear: Insight Into Occupational Exposure And Health Implications, Patrica Ivy Agorsor, Husam Kafeenah, Margaret D. Taiwo, Robin M. Verble, Michael O. Eze
Nontarget Analysis Of The Volatile And Semivolatile Chemical Profile Of Wildland Firefighter Gear: Insight Into Occupational Exposure And Health Implications, Patrica Ivy Agorsor, Husam Kafeenah, Margaret D. Taiwo, Robin M. Verble, Michael O. Eze
Biological Sciences Faculty Research & Creative Works
Prescribed fire releases a complex mixture of volatile and semivolatile organic compounds to the environment. Firefighters are directly exposed to these hazardous mixtures through occupational activities. This study investigated the volatile and semivolatile chemical contamination profile of firefighter protective gear and the effectiveness of laundering as a decontamination strategy. Our results revealed that firefighter gear accumulated a broad spectrum of combustion-derived contaminants, predominantly composed of polycyclic aromatic hydrocarbons and derivatives, phenolic compounds, and aromatic hydrocarbons. Representative compounds identified included toluene, biphenyl, naphthalene, 1-methynaphthalene, 2-methylnaphthalene, acenaphthene, phenol, alkylated phenols, and chlorinated phenols. Quantitative analysis revealed representative combustion-derived compounds at concentrations (mean …
Comparative Antibacterial Efficacy Of Hot Vs. Cold Aqueous Saussurea Costus Root Extracts Against Streptococcus Mutans, Fatima Adil Mohammed Hussien, Ahlam Taha Mohammed
Comparative Antibacterial Efficacy Of Hot Vs. Cold Aqueous Saussurea Costus Root Extracts Against Streptococcus Mutans, Fatima Adil Mohammed Hussien, Ahlam Taha Mohammed
Karbala International Journal of Modern Science
The present in vitro study assessed the antibacterial efficacy of aqueous root extracts prepared using hot and cold extraction methods of Saussurea costus against Streptococcus mutans isolates. Based on antibacterial screening results, the hot extract, which demonstrated greater antibacterial activity, was selected for subsequent cytotoxicity assessment. Cold and hot aqueous extracts were subjected to phytochemical screening, and phenolic acids and flavonoids were quantitatively assessed using High-Performance Liquid Chromatography. Antibacterial efficacy was evaluated using a resazurin-based microdilution technique to assess the minimum inhibitory concentration, followed by subculture to determine the minimum bactericidal concentration, and an agar well diffusion assay. Cytotoxicity of …
A Calibrated And Conformal Deep Learning Framework For Trustworthy Antinuclear Antibody Pattern Recognition With Selective Referral To Experts, Hussein Ali Hussein Al Naffakh, Ahmed Dheyaa Radhi, Raghdah Maytham Hameed, Muntaha Abdullah Reishaan, Fouad A. Majeed, Rozaida Ghazali
A Calibrated And Conformal Deep Learning Framework For Trustworthy Antinuclear Antibody Pattern Recognition With Selective Referral To Experts, Hussein Ali Hussein Al Naffakh, Ahmed Dheyaa Radhi, Raghdah Maytham Hameed, Muntaha Abdullah Reishaan, Fouad A. Majeed, Rozaida Ghazali
Karbala International Journal of Modern Science
Reading antinuclear antibody patterns on human epithelial cells by indirect immunofluorescence is the reference screen for systemic autoimmune rheumatic diseases, but it is slow, subjective, and variable between observers. Deep learning reaches high accuracy on this task, yet most systems return a single prediction without stating how reliable it is, which is unsafe in a diagnostic workflow. This paper presents an intelligent decision support framework built around a single calibrated uncertainty signal. That signal is the control variable for four reliability modules: confidence calibration, conformal prediction, error detection, and selective referral. A feature space out of distribution detector serves as …
Amorphous Calcium Phosphate Maintains Casein Microarchitecture While Modulating Bacterial Growth Kinetics, Vuk Uskoković, Michael Ibba, Lorenzo Eugenio Leiva
Amorphous Calcium Phosphate Maintains Casein Microarchitecture While Modulating Bacterial Growth Kinetics, Vuk Uskoković, Michael Ibba, Lorenzo Eugenio Leiva
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Casein, the primary source of protein in ruminant milk, represents a family of proteins that self-assemble into globules composed of finer spherical subunits and stabilized by calcium phosphate (CP) nanoparticles. These globules act as holdase-type chaperones for unfolded or partially folded proteins, preventing their aggregation. Simultaneously, by integrating CP nanoparticles, they enable the bioavailability of calcium and phosphate beyond their solubility limits, thereby enhancing the nutritional value of milk. Using a range of physicochemical and biological characterization techniques, including scanning and transmission electron microscopy, organic and inorganic elemental analyses, SDS-PAGE, and vibrational, UV/Vis and NMR spectroscopies, it is demonstrated that …
Cultivating Collaboration In Biomolviz: Key Attributes For Building A Stem Educator Community Of Practice, Pamela S. Mertz, Charmita Burch, Roderico Acevedo, Josh T. Beckham, Didem Vardar-Ulu, Kristin M. Fox, Lauren A. Genova, Rachel M. Mitton-Fry, Swati Agrawal, Daniel R. Dries, Kristen Procko
Cultivating Collaboration In Biomolviz: Key Attributes For Building A Stem Educator Community Of Practice, Pamela S. Mertz, Charmita Burch, Roderico Acevedo, Josh T. Beckham, Didem Vardar-Ulu, Kristin M. Fox, Lauren A. Genova, Rachel M. Mitton-Fry, Swati Agrawal, Daniel R. Dries, Kristen Procko
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
BioMolViz is an educational community of practice (CoP) focused on creating resources to improve biomolecular visual literacy instruction and assessment. The community of life science instructors developed in three phases, beginning with a small Core Team that emerged from a conference session and established the domain of interest for the CoP. In-person workshops, supported by short-term funding, drove the initial expansion of the community and the development of shared activities in Phase 2. This CoP was sustained through intentional choices about how members interact, collaborate, and share work. As the community matured in Phase 3, it was supported by longer-term …
Gc-Ms Profiling And Antibacterial Activity Of Cold-Macerated Garlic Extracts Against Multidrug-Resistant Uropathogens, Fatima A. Khalaf, Saeed A. Fayadh
Gc-Ms Profiling And Antibacterial Activity Of Cold-Macerated Garlic Extracts Against Multidrug-Resistant Uropathogens, Fatima A. Khalaf, Saeed A. Fayadh
Karbala International Journal of Modern Science
The growing number of cases of multidrug-resistant (MDR) urinary tract infections has made the clinical management of urinary tract diseases a significant challenge; therefore, the need for effective adjunctive therapies cannot be overemphasized. This study evaluated the bioactive components and antibacterial efficacy of cold-macerated garlic extracts obtained using distilled water, 70% ethanol and hexane solvents against antimicrobial-resistant urinary isolates. Out of 250 urine samples that were analyzed, 124 (49.6%) showed significant microbial growth, with Escherichia coli being the most frequently isolated organism. The results of the phytochemical screening and Gas Chromatography-Mass Spectrometry (GC-MS) analysis showed that the ethanolic extract had …
Waste Streams From Next Generation Molten Salt Reactors: The Challenge Of Creating An Insoluble Ceramic For Chloride Salt Waste, Alevtina A. Maksimova, Jake W. Amoroso, Matthew Page, Gregory Morrison, Hans Conrad Zur Loye
Waste Streams From Next Generation Molten Salt Reactors: The Challenge Of Creating An Insoluble Ceramic For Chloride Salt Waste, Alevtina A. Maksimova, Jake W. Amoroso, Matthew Page, Gregory Morrison, Hans Conrad Zur Loye
Faculty Publications
Molten salt reactors (MSRs) design development is of interest to many research groups and companies. Waste management for MSRs is one of the most important issues that needs to be resolved due to its impact on environmental safety, primarily via the dissolution of radionuclides in water. Furthermore, the waste treatment strategy will have a significant influence on the operating cost of MSRs, which is why a reliable process for the immobilization, transportation, storage and disposal of MSR waste must be addressed. This work presents a new approach for the immobilization of chloride salts from molten salt reactors in stable oxyhalide …
The Role Of External Factors In Shaping Carbohydrate Conformational Landscapes, Murat Yaman
The Role Of External Factors In Shaping Carbohydrate Conformational Landscapes, Murat Yaman
Dissertations, Theses, and Capstone Projects
Carbohydrates (glycans) are among the most structurally diverse biomolecules and participate in a wide range of biological processes, including molecular recognition, cell adhesion, immune response, host-pathogen interactions, and cellular signaling. Their biological functions are governed by a complex interplay between sequence, stereochemistry, conformational flexibility, and environmental factors. However, the structural heterogeneity and dynamic nature of glycans present significant challenges for both experimental characterization and theoretical modeling. In particular, the relationships between glycan structure, conformational dynamics, and the resulting potential energy surfaces remain incomplete.
This dissertation investigates how external factors modulate the potential energy surfaces of carbohydrates through a combination of …
Development Of Ultrafast Protein Digestion And Standards Free Quantitation Methods For Mass Spectrometric Analysis, Praneeth Ivan Joel Fnu
Development Of Ultrafast Protein Digestion And Standards Free Quantitation Methods For Mass Spectrometric Analysis, Praneeth Ivan Joel Fnu
Dissertations
A wide variety of biologically important molecules, such as enzymes, antibodies, hormones, transporters and receptors are proteins by composition and they play key roles in biological functions such as cellular regulation, communication, metabolism and physiological function. Protein dysfunctions and abnormalities are associated with numerous diseases, making proteins critical targets for understanding disease mechanisms and developing therapeutic interventions. Protein-based therapeutics such as monoclonal antibodies, hormones and vaccines gained popularity due to their high specificity, efficacy, and ability to treat complex diseases that are often difficult to address with small-molecule drugs.
Given the important role of proteins in a variety of biological …
Enhanced Osseointegration Of Functionally Graded Co˗Cr˗Mo˗Ti/Ha Implants: In Vitro And In Vivo Study In A Rabbit Model, Afrah M. Al Hussainey, Randa Kamel Hussain, Aseel Mustafa Abdul Majeed
Enhanced Osseointegration Of Functionally Graded Co˗Cr˗Mo˗Ti/Ha Implants: In Vitro And In Vivo Study In A Rabbit Model, Afrah M. Al Hussainey, Randa Kamel Hussain, Aseel Mustafa Abdul Majeed
Karbala International Journal of Modern Science
The present investigation aims to evaluate the effects of acid and laser surface treatments on the surface characteristics, biocompatibility, and osseointegration of functionally graded implants fabricated from a Co–Cr–Mo–Ti/HA alloy. The implant surfaces were modified using either an Nd: YAG laser or hydrochloric acid (HCl), while untreated implants served as controls. Atomic force microscopy (AFM) showed that the acid-treated surface exhibited the highest mean surface roughness (Sa) of 58.10 ± 0.24 nm compared to the laser-treated surface (42.64 ± 0.83 nm) and the untreated surface (37.73 ± 0.89 nm). The MTT assay also demonstrated a favourable cellular response on the …
Synthesis, Utilization And Biological Evaluation Of Β-Hairpin Peptides As Inhibitors Of Immune Checkpoints, Sarah Naylon
Synthesis, Utilization And Biological Evaluation Of Β-Hairpin Peptides As Inhibitors Of Immune Checkpoints, Sarah Naylon
Electronic Theses and Dissertations 2020 - Present
Peptide therapeutics have emerged as promising alternatives to monoclonal antibodies because of their smaller size, improved tissue penetration, and synthetic versatility. Yet their broader application is often limited by poor structural stability, rapid clearance, and reduced target residence times. This dissertation describes the design, synthesis, structural characterization, and biological evaluation of β-hairpin peptides as inhibitors of immune checkpoints and as peptide vaccine scaffolds while developing strategies to overcome these limitations. At first a series of antibody-derived β-hairpin peptides (mimics of complementary determining region heavy-chain 3: CDR-H3s) as covalent inhibitors of the PD-1/PD-L1 immune checkpoint were investigated. Electrophilic warheads were incorporated …
Palmnet: Confidence-Calibrated Edge-Cloud Ai For Field Diagnosis Of Date Palm Diseases, Muntadher Kareem, Raed Majeed
Palmnet: Confidence-Calibrated Edge-Cloud Ai For Field Diagnosis Of Date Palm Diseases, Muntadher Kareem, Raed Majeed
Karbala International Journal of Modern Science
Date palm (Phoenix dactylifera L.) is a cornerstone crop for Iraq and the wider MENA region, yet reliable in-field diagnosis of leaf disorders remains slow, labour-intensive, and constrained by a limited pool of agronomists. This paper presents PalmNet, a full-stack diagnostic system that classifies nine leaf conditions through a calibrated edge-cloud framework. The system is developed and evaluated on a public dataset of 3,089 field images spanning the nine classes, using a 70/15/15 stratified split. A ShuffleNetV2 student network, distilled from a ConvNeXt-Tiny teacher, is deployed on two complementary edge endpoints: a Raspberry Pi Zero 2 W field station …
Adaptive Phishing Url Detection Using Hybrid Fuzzy C-Means Clustering And Xgboost, Muntadher Mohammed Kareem, Rawaa I. Farhan
Adaptive Phishing Url Detection Using Hybrid Fuzzy C-Means Clustering And Xgboost, Muntadher Mohammed Kareem, Rawaa I. Farhan
Karbala International Journal of Modern Science
Phishing attacks continue to evolve in sophistication, rendering static detection methods increasingly ineffective. Existing URL-based approaches suffer from limited adaptability to emerging phishing patterns, mislabeled training data, and insufficient validation protocols. This paper proposes a hybrid phishing URL detection system that integrates Fuzzy C-Means (FCM) clustering with XGBoost classification, enhanced by a novel Micro Adaptive Feature Extractor (MAFE). The system employs a multi-stage pipeline: feature engineering generating 36 statistical and interaction features, MAFE producing 15 adaptive features through class-aware dynamic weighting, micro-pattern detection, and entropy analysis, and FCM with K=2 clusters providing soft membership features to XGBoost. A two-pass confidence-based …
Crystal Structure Of New Polar Rare Earth Borates Na2.62Ln2.12(Bo3)3 (Ln = Pr, Nd, Sm) Containing Isolated Bo3 Groups, Alevtina A. Maksimova, Mark D. Smith, Hans Conrad Zur Loye
Crystal Structure Of New Polar Rare Earth Borates Na2.62Ln2.12(Bo3)3 (Ln = Pr, Nd, Sm) Containing Isolated Bo3 Groups, Alevtina A. Maksimova, Mark D. Smith, Hans Conrad Zur Loye
Faculty Publications
Three new rare earth borates, Na2.62Ln2.12(BO3)3 (Ln = Pr, Nd, Sm), were synthesized via a high-temperature solution reaction using a BaCO3–H3BO3–NaF flux and structurally characterized by single-crystal X-ray diffraction analysis. The compounds crystallize in the orthorhombic space group Amm2 with lattice parameters a = 5.0985(10) Å, b = 11.180(2) Å, c = 7.1483(14) Å, and a unit cell volume of 407.48(14) Å3 (Z = 2) for Na2.62Pr2.12(BO3)3, a = 5.0983(10) Å, b = 11.181(2) Å, c = 7.1491(14) Å, and a unit cell volume of 407.51(14) Å3 (Z = 2) for Na2.62Nd2.12(BO3)3, and a = 5.08630(10) Å, b …
Single Crystal Growth Of The Orthoborate Nabalu(Bo3)2 And Optical Investigation Of Eu3+ And Tb3+ Doped Nabalu(Bo3)2, Alevtina A. Maksimova, Mark D. Smith, Lakshani W. Masachchi, Hans Conrad Zur Loye
Single Crystal Growth Of The Orthoborate Nabalu(Bo3)2 And Optical Investigation Of Eu3+ And Tb3+ Doped Nabalu(Bo3)2, Alevtina A. Maksimova, Mark D. Smith, Lakshani W. Masachchi, Hans Conrad Zur Loye
Faculty Publications
Sodium barium lutetium borate NaBaLu(BO3)2 crystals were synthesized using a high-temperature solution method. The crystal structure of this layered orthoborate is described and corresponds to that of an extensive orthoborates family, NaBaR(BO3)2 (R = Sc, Y, Yb, Tb – Lu). NaBaLu(BO3)2 was doped by Eu3+ and Tb3+ to explore its performance as a host material and to investigate the luminescent properties of the Eu3+ and Tb3+ doped materials. The emission spectra of the NaBaLu(BO3)2:Ln (Ln = Eu, Tb) crystals are presented. The most …