Physiology Commons^™

Imposed Constraints On The Smith-Waterman Alignment Algorithm For Enhanced Modeling Of A Single-Molecule Dna Sequencer, Patrick G. Humphrey, Gregory R. Bashford

Biomedical Imaging and Biosignal Analysis Laboratory

An effort has been underway to develop a system for de novo sequencing of single DNA molecules with very long reads. The system operates by optically detecting the passage of fluorescently tagged DNA bases through a detection zone. A successful system would be revolutionary with respect to speed, read length, cost and minimized laboratory infrastructure. An important part of system development is modeling of the detection process. In particular, predicting the expected error from a set of sequencing parameters is helpful in system design. This paper describes variations on the Smith-Waterman algorithm for subsequence alignment used in a single-molecule detection …

The Body Eclectic: Viewing Bodily Modification In David Nebreda, David Houston Jones

Reconstruction: Studies in Contemporary Culture

[First paragraph]

David Nebreda's work presents current thinking on body/performance art with a dilemma. In stretching social prescriptions of the (re)presentable body, it exemplifies a pervasive anxiety concerning bodily modification and the politics of looking, and demands a new theorisation of the body in photographic representation. Autoportraits (2000) depicts a series of visibly emaciated bodies on which wounds are inflicted by knives, cords and flames [1]. The photographs document the strict schedules of discipline to which the bodies are subjected, and sometimes represent the very moment at which practices of bodily modification are executed. It is this subject-matter which threatens …

The Effect Of Red Blood Cell Velocity On Oxygenation Measurements Using Resonance Raman Spectroscopy, Derrick Williams

Theses and Dissertations

Resonance Raman spectroscopy can be used to estimate the hemoglobin oxygen saturation. Previous studies have demonstrated that exposure of oxygenated red blood cells to laser illumination may result in photo-induced displacement of oxygen from hemoglobin. In this study, an in vitro model was used to evaluate the relationship between this photo-induced effect and the red blood cell velocity. A computer-controlled system was implemented to acquire variables such as red cell velocity, microvessel diameter and hemoglobin oxygen saturation at multiple sites in selected microvascular networks. Using this system, resonance Raman spectroscopy was employed to measure hemoglobin oxygen saturation gradients in arterioles …

Acute And Chronic Effects Of Artificial Rearing On Rat Genioglossus Muscle, Wayne Allen Moore Jr.

Theses and Dissertations

In most mammals, nutritive suckling is critical during the early neonatal period. The genioglossus (GG) muscle in rat plays an important role in protruding the tongue for efficient suckling. The purpose of this study was to examine the contractile properties and myosin heavy chain (MHC) phenotype of the GG following an early period of artificial rearing, which reduced nutritive suckling. Beginning at three days of age Sprague-Dawley rats were fed via implanted gastric cannula until postnatal day 14 (P14). At P14, artificially reared (AR) rat pups were either placed with a lactating dam until the end of the weaning period …

Erythrocyte-Associated Transients In Capillary Po2 In The Rat Spinotrapezius Muscle During Hemodilution With Hespan And A Hemoglobin-Based Oxygen Carrier, Matthew Barker

Theses and Dissertations

Hemoglobin-based oxygen carriers for use as transfusion fluids have emerged as a leading technology directed at stemming shortages of a safe blood supply and providing a readily available resuscitation fluid in various trauma situations. The purpose of this investigation was to determine the effects of isovolemic hemodilution with Hespan and a hemoglobin-based oxygen carrier (HBOC) on erythrocyte-associated transients (EATs) in capillary PO2. The particulate nature of blood flow in capillaries, when observed from a stationary observation point, results in fluctuations of PO2 as alternating red blood cells and plasma gaps move through the detection region. Therefore, through experimental methods which …

Dietary Isoflavones Alter Regulatory Behaviors, Metabolic Hormones And Neuroendocrine Function In Long-Evans Male Rats, Edwin D. Lephart, James P. Proter, Lihong H. Bu, Trent D. Lund, Kenneth Setchell, Gina Ramoz, William R. Crowley

Faculty Publications

Phytoestrogens derived from soy foods (or isoflavones) have received prevalent usage due to their 'health benefits' of decreasing: a) age-related diseases, b) hormone-dependent cancers and c) postmenopausal symptoms. However, little is known about the influence of dietary phytoestrogens on regulatory behaviors, such as food and water intake, metabolic hormones and neuroendocrine parameters. This study examined important hormonal and metabolic health issues by testing the hypotheses that dietary soy-derived isoflavones influence: 1) body weight and adipose deposition, 2) food and water intake, 3) metabolic hormones (i.e., leptin, insulin, T3 and glucose levels), 4) brain neuropeptide Y (NPY) levels, 5) heat production …

Improving The Accuracy Of The Vo2 Max Prediction Obtained From Submaxial Ymca Testing, Lindsay Parson

Masters Theses & Specialist Projects

Maximal oxygen uptake (VO2 max) is the best criterion measure for aerobic fitness and the prescription of exercise intensity for programs designed to enhance cardiorespiratory fitness. There are two ways of obtaining VO2 max: maximal tests, which require subjects to exercise to the point of volitional exhaustion and provide the most accurate measure; and submaximal tests, which are less physically strenuous but have lower accuracy. A popular submaximal protocol is the YMCA bike test. Steady state heart rate (HR) is measured at multiple submaximal workloads and extrapolated to the subject's estimated maximal HR (220-age). The VO2 corresponding to the estimated …

Muscle Vibration's Effect On The Threshold Frequency Of An Electrically Induced Muscle Cramp, Joshua D. Williamson

All-Inclusive List of Electronic Theses and Dissertations

Objective: The purpose of this study was to evaluate the effect of muscle vibration on the threshold frequency of an electrically-induced muscle cramp of the flexor hallucis brevis. Design and setting: This study used a 2 x 2 factorial design study. The independent variables consisted of treatment ( control and vibration) and time (pretest and post-test). The dependent variable was the threshold frequency of an electrically induced muscle cramp. Subjects: 16 healthy individuals, aged 21.6 ± 8.0 years, free from any lower extremity neurological, muscular, or vascular pathology were used in this study. Methods: Subjects reported on three consecutive days …

Phosphorylation Of Skeletal Muscle Acetyl-Coa Carboxylase By Ampk Enhances Palmitoyl-Coa Inhibition, Dustin S. Rubink

Theses and Dissertations

Acetyl-CoA carboxylase (ACC) catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism. ACC beta or 2 has been shown to be localized on the mitochondria in close proximity to carnintine palmitoyl transferase 1 (CPT-1), the enzyme responsible for the influx of acyl-CoA into the matrix where beta oxidation takes place. CPT-1 is inhibited by malonyl-CoA produced by ACC. It has been well documented that AMP activated kinase (AMPK) when activated phosphorylates and inactivates ACC. ACC is controlled allosterically by citrate, which activates, and by palmitoyl-COA, which inhibits. In this study, we asked the question, …

Lateral Hypothalamic Signaling Mechanisms Underlying Feeding Stimulation: Differential Contributions Of Src Family Tyrosine Kinases To Feeding Triggered Either By Nmda Injection Or By Food Deprivation, Arshad Khan, Herman Cheung, Elizabeth Gillard, Jennifer Palarca, Derek Welsbie, James Gurd, B. Stanley

Selected Works Temporary Series

No abstract provided.

Lateral Hypothalamic Signaling Mechanisms Underlying Feeding Stimulation: Differential Contributions Of Src Family Tyrosine Kinases To Feeding Triggered Either By Nmda Injection Or By Food Deprivation, Khan, Herman Cheung, Elizabeth Gillard, Jennifer Palarca, Derek Welsbie, James Gurd, B. Stanley

Departmental Papers (Biology)

No abstract provided.

The Caenorhabditis Elegans F-Box Protein Sel-10 Promotes Female Development And May Target Fem-1 And Fem-3 For Degradation By The Proteasome, Sibylle Jager, Hillel T. Schwartz, H. Robert Horvitz, Barbara Conradt

Dartmouth Scholarship

The Caenorhabditis elegans F-box protein SEL-10 and its human homolog have been proposed to regulate LIN-12 Notch signaling by targeting for ubiquitin-mediated proteasomal degradation LIN-12 Notch proteins and SEL-12 PS1 presenilins, the latter of which have been implicated in Alzheimer's disease. We found that sel-10 is the same gene as egl-41, which previously had been defined by gain-of-function mutations that semidominantly cause masculinization of the hermaphrodite soma. Our results demonstrate that mutations causing loss-of-function of sel-10 also have masculinizing activity, indicating that sel-10 functions to promote female development. Genetically, sel-10 acts upstream of the genes fem-1, fem-2, and fem-3 and …

Examining Multisystem Coordination In Response To Stressors In Early Childhood, Tiffany Phu

Electronic Theses and Dissertations

This dissertation presents a set of two studies that investigate linkages between the Hypothalamic-Pituitary-Adrenal (HPA) axis and Sympathetic Nervous System (SNS) in response to a stressor paradigm among young children experiencing low-income. Contextual/child factors that shape multisystem physiologic coordination were also examined. A novel application of structural equation modeling was used to model sample-by-sample linkages between salivary analytes that indexed HPA axis and SNS functioning (respectively, salivary cortisol and salivary alpha amylase [sAA]). The preschoolers in Study 1 showed linkages between salivary cortisol and sAA across a novel research visit at their childcare center that included a stressor paradigm. Child …

Thermal Adaptation Of Maternal And Embryonic Phenotypes In A Wide Spread Lizard (Sceloporus Undulatus), Christopher E. Oufiero

All-Inclusive List of Electronic Theses and Dissertations

Geographically widespread ectotherms encounter thermal gradients that generate variation in behavior, physiology and life-history. Because rates of physiological processes are very sensitive to temperature, cold environments are thought to favor genotypes that have relatively high capacities for growth despite environmental constraints. Two different adaptive responses can occur: (1) mothers in colder environments can allocate more energy to each offspring, or (2) offspring in colder environments make more efficient use of available resources. In this study, I examined both maternal adaptations and embryonic adaptations to environmental temperature. Evidence of maternal adaptations was assessed by examining the relationship between egg size and …

Role Of Glycine Receptor In Protecting Cells During Blood Depletion (Ischemia), Hui Zhang

All-Inclusive List of Electronic Theses and Dissertations

The research project aims to determine the role of glycine receptor (GlyR) in the protection of plasma membrane of ischemic cells. Plasma membrane disruption is a progressive process during ischemia. Once plasma membrane becomes permeable to macromolecules, the cell injuries are irreversible. Ischemia can be modeled in the lab by using ATP-depletion medium. Previous results have shown that glycine (Gly) in extracellular medium prevents membrane permeabilization during ischemia. These studies suggest that the protection by glycine might be mediated by its binding to GlyR. But this hypothesis has never been confirmed. This study shows that glycine cannot protect HEK.293 cells …

Size And Organic Content Of Eggs Of Marine Annelids, And The Underestimation Of Egg Energy Content By Dichromate Oxidation, William Jaeckle, Bruno Pernet

Scholarship

Dichromate oxidation is a simple technique that is often used to estimate the energy content of eggs in studies of marine invertebrate life histories (1). We used this method to measure the energy contents of the eggs of 12 species of marine annelids. In combination with measures of egg ash-free dry weight (AFDW), these data yielded estimates of AFDW-specific energy density that were mostly lower than the average weight-specific energy density of carbohydrates. This seemed unlikely to be correct, as invertebrate eggs typically contain little carbohydrate and instead are composed primarily of energy-dense protein and lipid (1, 2). After validating …

Flash Artifact Suppression In Two-Dimensional Ultrasound Imaging, Richard Yung Chiao, Gregory Ray Bashford, Mark Peter Feilen, Cynthia Andrews Owen

Biomedical Imaging and Biosignal Analysis Laboratory

Flash artifacts in ultrasound flow images are suppressed to achieve enhanced flow discrimination. Flash artifacts typically occur as region of elevated signal strength (brightness or equivalent color) within an image. A flash suppression algorithm included the steps of estimating the flash within an image and then suppressing the estimated flash. The mechanism for flash suppression is spatial filtering. An extension of this basic method used information from adjacent frames to estimate the flash and/or to smooth the resulting image sequence. Temporal information from adjacent frames is used as an adjunct to improve performance.

Can Professional Development Programs Help Close The Achievement Gap?, C. Jayne Brahler

Health and Sport Science Faculty Publications

This paper explores the question of whether it is possible to design professional development programs for teachers that can significantly improve student test results and reduce the achievement gap for students.

The Dayton (Ohio) Foundation and the Montgomery County (Ohio) Educational Service Center, sponsors of The Miami Valley Teacher/Leadership Academy, answer this question with a resounding yes. Recent results indicate that the academy's two-year program, designed to provide professional development to help improve student test scores, not only succeeded in significantly improving the student proficiency mean score, but also considerably reduced the achievement gap for participating students.

This paper includes …

Mechanism Governing The Cellular Susceptibility To Secretory Phospholipase A2, Lauren Blackburn Jensen

Theses and Dissertations

Secretory phospholipase A2 (sPLA2) is an important part of apoptosis and disposal of damaged and dying cells. However, healthy cells are not susceptible to attack by sPLA2. Recent studies have focused on membrane properties necessary to induce susceptibility in both artificial and biological membranes. Hydrolysis of phospholipids by sPLA2 requires at least two preliminary steps: first, adsorption of the enzyme to the cellular membrane, and second, movement of a phospholipid into the active site of the enzyme. We determined the effects of susceptibility on each of the two steps and determined the contributions changing the equilibrium constants have on susceptibility. …

Regulation Of Ca2+-Activated K+ Channel: Changes With Development, Mike T. Lin

Loma Linda University Electronic Theses, Dissertations & Projects

In ovine middle cerebral arteries, it has been shown that the [Ca²⁺]_i change in response to iberiotoxin, a selective BK channel blocker, is significantly different between adult and fetal VSMCs. Our study of basilar VSMCs in whole-cell preparations showed that the total outward current density of fetal myocytes (57.9 ± 6.7 pA/pF) was greater than that of the adult (37.9 ±1.8 pA/pF). This increase in outward current density is contributed by an increase in BK channel current density in fetal myocytes. Excised, inside-out preparations showed that the unitary conductance, as well as the BK channel expression, did …

Comparison Of Selected Orthotic Devices On Ground Reaction Forces Produced During A Drop Landing, Betsy Faye Halwes

All-Inclusive List of Electronic Theses and Dissertations

Context: The effect of different types of athletic shoes, foot orthoses, and other arch support materials on lower extremity kinetics and ground reaction forces during walking and running gait has been documented; however, the potential effects of such devices on ground reaction forces during drop landings has not been extensively studied. Objective: The purpose of this study was to evaluate if over-the-counter orthotics, made of the same material, affect vertical and mediolateral ground reaction forces during a drop landing. Design and Setting: A lx3 repeated measures design guided this study where the independent variable, orthotic, has 3 levels (no orthotic-control, …

Qtc Is Associated With Obesity And Physical Activity Level For African American Females, C. Jayne Brahler

Health and Sport Science Faculty Publications

Long QT syndrome (LQTS) is an independent risk factor for cardiovascular or ischemic disease mortality. Obesity as a cause for acquired LQTS in otherwise healthy individuals is rapidly gaining the attention of the scientific community. African American people have a higher incidence of obesity compared to Caucasians, yet race-specific information is not available for their prevalence of LQTS. Chronic physical activity can help reduce the incidence of obesity, yet little is known about the effects of chronic physical activity on acquired LQTS. Subjects in this study were a volunteer sample of African American mothers (21-53 yr, n = 44) and …

The Effects Of Plyometrics Training On Neuromuscular Responses And Ground Reaction Forces Surrounding The Knee, Barbara Mcdowell

Human Movement Studies & Special Education Theses & Dissertations

Several investigations have noted altered kinetic and neuromuscular landing patterns in adolescent female athletes following various plyometrics programs. The purpose of this study was to investigate the effects of a time-limited plyometrics training program on neuromuscular responses and peak vertical ground reaction force (PVGRF) in Division I collegiate soccer players. Sixteen (8 male, age=l9.38 ± 1.4 yrs, ht= 178.44 ± 8.99 cm, mass =80.38 ± 8.37 kg; 8 female, age=19.75 ± 0.71 yrs, ht=163.83 ± 4.30 cm, mass =62.13 ± 6.29 kg) athletes completed the testing protocol and plyometric training. Seven (3 male, average age=22.00 ± 1.00 yrs, average height=171.88 …

Photoreactive Bicyclic Amino Acids As Substrates For Mutant Escherichia Coli Phenylalanyl-Trna Synthetases, Thomas Bentin, Ramin Hamzavi, Jahan Salomonsson, Hervé Roy, Michael Ibba, Peter E. Nielsen

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Unnatural amino acids carrying reactive groups that can be selectively activated under non-invasive biologically benign conditions are of interest in protein engineering as biological tools for the analysis of protein-protein and protein-nucleic acids interactions. The double ring system phenylalanine analogues benzofuranylalanine and benzotriazolylalanine were synthesized, and their photolability was tested by UV irradiation at 254, 320, and 365 nm. Although both showed photo reactivity, benzofuranylalanine appeared as the most promising compound because this amino acid was activated by UVA (long wavelength) irradiation. These amino acids were also tested for in vitro charging of tRNA^Phe and for protein mutagenesis via …

Divergence In Non-Cognate Amino Acid Recognition Between Class I And Class Ii Lysyl-Trna Synthetases, Jeffrey D. Levengood, Sandro F. Ataide, Hervé Roy, Michael Ibba

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Lysine insertion during coded protein synthesis requires lysyl-tRNA^Lys, which is synthesized by lysyl-tRNA synthetase (LysRS). Two unrelated forms of LysRS are known: LysRS2, which is found in eukaryotes, most bacteria, and a few archaea, and LysRS1, which is found in most archaea and a few bacteria. To compare amino acid recognition between the two forms of LysRS, the effects of l-lysine analogues on aminoacylation were investigated. Both enzymes showed stereospecificity toward the l-enantiomer of lysine and discriminated against noncognate amino acids with different R-groups (arginine, ornithine). Lysine analogues containing substitutions at other positions were generally most effective as …

Androgen Receptor Expression In The Rat Prostate Is Down-Regulated By Dietary Phytoestrogens, Edwin D. Lephart, Trent D. Lund, Daniel J. Munson, Herman Aldercreutz, Robert J. Handa

Faculty Publications

Background- It is well established that the growth of the prostate gland is a hormone-dependent phenomenon involving both androgenic and estrogenic control. Proliferation of prostate cells is, at least in part, under control of estrogen receptor beta (ER-beta). Phytoestrogens bind ER-beta with high affinity and therefore may have antiproliferative effects in the prostate. Methods- The prostates of male Long-Evans rats fed a diet high in phytoestrogens (Phyto-600) or very low levels of phytoestrogens (Phyto-free) were analyzed to determine the impact of dietary phytoestrogens on prostate weight and androgen receptor (AR) expression in the prostate. Results- Dietary phytoestrogens significantly decreased post-pubertal …

Intravenous 2-Deoxy-D-Glucose Injection Rapidly Elevates Levels Of The Phosphorylated Forms Of P44/42 Mitogen-Activated Protein Kinases (Extracellularly Regulated Kinases 1/2) In Rat Hypothalamic Parvicellular Paraventricular Neurons, Arshad Khan, Alan Watts

Selected Works Temporary Series

No abstract provided.

Changes In Gdnf Protein Content Of Skeletal Muscle Following Involuntary Exercise Are Long Lived, Kyle R. Kinnell, Monica J. Czarnopys, John Spitsbergen

Biological Sciences Faculty and Graduate Student Research

Glial-cell line derived neurotrophic factor (GDNF) is a neurotrophic factor produced by skeletal muscle. GDNF has been shown to be potent survival factor for motor neurons. We have previously shown that GDNF content in skeletal muscle is altered following exercise and GDNF levels 24 hours after the last bout of exercise are significantly different than those measured immediately after exercise. We sought to determine how long after exercise do GDNF protein levels remain altered. We removed extensor digitorum longus (EDL) and Soleus (SOL), 24 hr, 72 hr and 1 week following the last bout of involuntary exercise. Muscles were processed …

Intravenous 2-Deoxy-D-Glucose Injection Rapidly Elevates Levels Of The Phosphorylated Forms Of P44/42 Mitogen-Activated Protein Kinases (Extracellularly Regulated Kinases 1/2) In Rat Hypothalamic Parvicellular Paraventricular Neurons, Khan, Alan Watts

Departmental Papers (Biology)

No abstract provided.

Hatching Asynchrony, Survival, And The Fitness Of Alternative Adult Morphs In Ambystoma Talpoideum, Travis J. Ryan

Scholarship and Professional Work - LAS

The mole salamander, Ambystoma talpoideum, exhibits both aquatic (gilled) and terrestrial (metamorphosed) adult morphologies. Previous studies have shown the existence of body-size advantages associated with the terrestrial morph in A. talpoideum and other polymorphic salamanders (e.g., A. tigrinum). However, aquatic adult A. talpoideum mature at a younger age and often breed earlier than terrestrial adults. We tested the hypothesis that early maturation and reproduction in aquatic adults increase fitness (irrespective of body size). We reared larval A. talpoideum in mesocosms and varied the timing of hatching, with early-hatching larvae representing the offspring from early-breeding aquatic adults, and late-hatching larvae representing …