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Articles 421 - 450 of 1216
Full-Text Articles in Environmental Microbiology and Microbial Ecology
Prevalence Of Bacillus Licheniformis On Northern Saw-Whet Owls (Aegolius Acadicus), Lauren Benedict
Prevalence Of Bacillus Licheniformis On Northern Saw-Whet Owls (Aegolius Acadicus), Lauren Benedict
Senior Honors Theses
Birds are hosts to a variety of bacteria and fungi including some that are keratinolytic. These feather degrading bacteria, including Bacillus licheniformis, are capable of degrading β-keratin which is a major component of feathers. While there is little evidence to indicate that feather degrading bacteria are capable of degrading feathers on live birds, there is ample evidence to indicate that many bird species experience altered feather coloration. There is significant variation in the reported prevalence of B. licheniformis on birds with percentages ranging from 6.7% to 99%. This study sought to provide further support for an overall prevalence of …
Microbial Contamination On Ambulance Surfaces: A Systematic Literature Review, Adam Obenza, Patricia Cruz, Mark Buttner, D. Woodard
Microbial Contamination On Ambulance Surfaces: A Systematic Literature Review, Adam Obenza, Patricia Cruz, Mark Buttner, D. Woodard
Environmental & Global Health Faculty Research
Healthcare-associated infections (HAIs) are infections that patients acquire while receiving medical treatment in a healthcare facility. During ambulatory transport, the patient may be exposed to pathogens transmitted from emergency medical service (EMS) personnel or EMS surfaces. The aim of this study was to determine whether organisms commonly associated with HAIs have been detected on surfaces in the patient-care compartment of ambulances. Five electronic databases – PubMed, Scopus, Web of Science, Embase and Google Scholar were used to search for articles using inclusion and exclusion criteria following the PRISMA checklist. Inclusion criteria consisted of articles published in English, between 2009 and …
Life Stage And Proximity To Roads Shape The Skin Microbiota Of Eastern Newts (Notophthalmus Viridescens), Vanessa P. Wuerthner, Jessica Hua, Obed Hernandez-Gomez
Life Stage And Proximity To Roads Shape The Skin Microbiota Of Eastern Newts (Notophthalmus Viridescens), Vanessa P. Wuerthner, Jessica Hua, Obed Hernandez-Gomez
Natural Sciences and Mathematics | Faculty Scholarship
Host-associated microbiomes play an essential role in the health of organisms, including immune system activation, metabolism, and energy uptake. It is well established that microbial communities differ depending on the life stage and natural history of the organism. However, the effects of life stage and natural history on microbial communities may also be influenced by human activities. We investigated the effects of amphibian life stage (terrestrial eft vs. aquatic adult) and proximity to roadways on newt skin bacterial communities. We found that the eft and adult life stages differed in bacterial community composition; however, the effects of roads on community …
Drivers Of The Taxonomie And Functional Diversity, And Functional Composition Of Fungal Endophyte Communities In Crucifers, Junhui Chen, Hafiz Sohaib Ahmed Saqib, Komivi Senyo Akutse, Feiying Yang, Xiaolu Wu, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
Drivers Of The Taxonomie And Functional Diversity, And Functional Composition Of Fungal Endophyte Communities In Crucifers, Junhui Chen, Hafiz Sohaib Ahmed Saqib, Komivi Senyo Akutse, Feiying Yang, Xiaolu Wu, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
All Peer-Reviewed Publications
Ecological traits that filter the occurrence of species and functional groups responding to environmental and other variables are keys to the assembly processes of communities, but little is currently known about these processes for endophytic fungi. A trophic-based joint species distribution model was applied to endophyte occurrence by 110 crucifer-inhabiting fungal species isolated from Brassica rapa, Raphanus sativus and Brassica oleracea, from 21 sites with different landscape compositions and pesticide use over four seasons. We investigated the responses of taxonomie diversity, function diversity and functional composition. Season, plant identity and plant part were significant factors in shaping all indices. Elevation …
Ohio Anuran Gut Microbiomes, Serena Hoffman
Ohio Anuran Gut Microbiomes, Serena Hoffman
Undergraduate Honors Thesis Projects
Recent studies focusing on the skin and gut microbiome of vertebrates have found how important microbiomes are to maintaining host health. Understanding the role the gut microbiome plays to host health is of great importance for conservation. Less is known about the gut microbiome than the skin microbiome for amphibians. Literature is especially lacking for local Ohio anuran species. The purpose of this study was to establish the baseline composition of the gut microbiome for local Ohio anurans and to determine whether host species or habitat is the best predictor of gut microbiome composition. Tadpoles were collected from seven different …
Microbiological Contamination Associated With The Proximity Of A Refuse Dumpsite To A River Situated In Okada, Edo State, Nigeria, Ebere J. Okafor-Elenwo, Odaro S. Imade, Osazee E. Izevbuwa
Microbiological Contamination Associated With The Proximity Of A Refuse Dumpsite To A River Situated In Okada, Edo State, Nigeria, Ebere J. Okafor-Elenwo, Odaro S. Imade, Osazee E. Izevbuwa
Journal of Bioresource Management
This study was performed to evaluate the potential contamination of the Okponha river situated near a dumpsite in Okada, Edo State, Nigeria. Water samples were collected and analyzed for bacteriological and parasitological quality using standard procedures. Isolation and enumeration of bacterial colonies were performed by pour plate technique and the isolated bacteria were identified by standard phenotypic tests. Helminths and protozoa were screened by the direct smear technique. The values of HPC (3.79 ± 0.12 log10 CFU/ml) and TCC (2.20 ± 0.14 log10 CFU/ml) obtained from the river water samples exceeded WHO and NAFDAC recommended limits (≤ 2 …
Linking Soil Microbial Community Structure To Potential Carbon Mineralization: A Continental Scale Assessment Of Reduced Tillage, Elizabeth L. Rieke, Shannon B. Cappellazzi, Michael Cope, Daniel Liptzin, Gregory Mac Bean, Kelsey L.H. Greub, Charlotte E. Norris, Paul W. Tracy, Ezra Aberle, Amanda Ashworth, Oscar Bañuelos Tavarez, Andy I. Bary, Roland L. Baumhardt, Alberto Borbón Gracia, Daniel C. Brainard, Jameson R. Brennan, Dolores Briones Reyes, Darren Bruhjell, Cameron N. Carlyle, James J.W. Crawford, Cody F. Creech, Steve W. Culman, Bill Deen, Curtis J. Dell, Justin D. Derner, Thomas F. Ducey, Sjoerd W. Duiker, Miles F. Dyck, Benjamin H. Ellert, Avelino Espinosa Solorio, Steven J. Fonte, Simon Fonteyne, Ann-Marie Fortuna, Jamie L. Foster, Lisa M. Fultz, Audrey V. Gamble, Charles M. Geddes, Deirdre Griffin-Lahue, John H. Grove, Stephen K. Hamilton, Xiying Hao, Zachary D. Hayden, Nora Honsdorf, Julie A. Howe, James A. Ippolito, Gregg A. Johnson, Mark A. Kautz, Newell R. Kitchen, Sandeep Kumar, Kirsten S.M. Kurtz, Francis J. Larney, Katie L. Lewis, Matt Liebman, Antonio Lopez Ramirez, Stephen Machado, Bijesh Maharjan, Miguel Angel Martinez Gamiño, William E. May, Mitchel P. Mcclaran, Marshall D. Mcdaniel, Neville Millar, Jeffrey P. Mitchell, Amber D. Moore, Philip A. Moore, Manuel Mora Gutiérrez, Kelly A. Nelson, Emmanuel C. Omondi, Shannon L. Osborne, Leodegario Osorio Alcalá, Philip Owens, Eugenia M. Pena-Yewtukhiw, Hanna J. Poffenbarger, Brenda Ponce Lira, Jennifer R. Reeve, Timothy M. Reinbott, Mark S. Reiter, Edwin L. Ritchey, Kraig L. Roozeboom, Yichao Rui, Amir Sadeghpour, Upendra M. Sainju, Gregg R. Sanford, William F. Schillinger, Robert R. Schindelbeck, Meagan E. Schipanski, Alan J. Schlegel, Kate M. Scow, Lucretia A. Sherrod, Amy L. Shober, Sudeep S. Sidhu, Ernesto Solís Moya, Mervin St Luce, Jeffrey S. Strock, Andrew E. Suyker, Virginia R. Sykes, Haiying Tao, Alberto Trujillo Campos, Laura L. Van Eerd, Nele Verhulst, Tony J. Vyn, Yutao Wang, Dexter B. Watts, Bryan B. William, David L. Wright, Tiequan Zhang, Cristine L.S. Morgan, C. Wayne Honeycutt
Linking Soil Microbial Community Structure To Potential Carbon Mineralization: A Continental Scale Assessment Of Reduced Tillage, Elizabeth L. Rieke, Shannon B. Cappellazzi, Michael Cope, Daniel Liptzin, Gregory Mac Bean, Kelsey L.H. Greub, Charlotte E. Norris, Paul W. Tracy, Ezra Aberle, Amanda Ashworth, Oscar Bañuelos Tavarez, Andy I. Bary, Roland L. Baumhardt, Alberto Borbón Gracia, Daniel C. Brainard, Jameson R. Brennan, Dolores Briones Reyes, Darren Bruhjell, Cameron N. Carlyle, James J.W. Crawford, Cody F. Creech, Steve W. Culman, Bill Deen, Curtis J. Dell, Justin D. Derner, Thomas F. Ducey, Sjoerd W. Duiker, Miles F. Dyck, Benjamin H. Ellert, Avelino Espinosa Solorio, Steven J. Fonte, Simon Fonteyne, Ann-Marie Fortuna, Jamie L. Foster, Lisa M. Fultz, Audrey V. Gamble, Charles M. Geddes, Deirdre Griffin-Lahue, John H. Grove, Stephen K. Hamilton, Xiying Hao, Zachary D. Hayden, Nora Honsdorf, Julie A. Howe, James A. Ippolito, Gregg A. Johnson, Mark A. Kautz, Newell R. Kitchen, Sandeep Kumar, Kirsten S.M. Kurtz, Francis J. Larney, Katie L. Lewis, Matt Liebman, Antonio Lopez Ramirez, Stephen Machado, Bijesh Maharjan, Miguel Angel Martinez Gamiño, William E. May, Mitchel P. Mcclaran, Marshall D. Mcdaniel, Neville Millar, Jeffrey P. Mitchell, Amber D. Moore, Philip A. Moore, Manuel Mora Gutiérrez, Kelly A. Nelson, Emmanuel C. Omondi, Shannon L. Osborne, Leodegario Osorio Alcalá, Philip Owens, Eugenia M. Pena-Yewtukhiw, Hanna J. Poffenbarger, Brenda Ponce Lira, Jennifer R. Reeve, Timothy M. Reinbott, Mark S. Reiter, Edwin L. Ritchey, Kraig L. Roozeboom, Yichao Rui, Amir Sadeghpour, Upendra M. Sainju, Gregg R. Sanford, William F. Schillinger, Robert R. Schindelbeck, Meagan E. Schipanski, Alan J. Schlegel, Kate M. Scow, Lucretia A. Sherrod, Amy L. Shober, Sudeep S. Sidhu, Ernesto Solís Moya, Mervin St Luce, Jeffrey S. Strock, Andrew E. Suyker, Virginia R. Sykes, Haiying Tao, Alberto Trujillo Campos, Laura L. Van Eerd, Nele Verhulst, Tony J. Vyn, Yutao Wang, Dexter B. Watts, Bryan B. William, David L. Wright, Tiequan Zhang, Cristine L.S. Morgan, C. Wayne Honeycutt
Agricultural and Environmental Sciences Faculty Research
Potential carbon mineralization (Cmin) is a commonly used indicator of soil health, with greater Cmin values interpreted as healthier soil. While Cmin values are typically greater in agricultural soils managed with minimal physical disturbance, the mechanisms driving the increases remain poorly understood. This study assessed bacterial and archaeal community structure and potential microbial drivers of Cmin in soils maintained under various degrees of physical disturbance. Potential carbon mineralization, 16S rRNA sequences, and soil characterization data were collected as part of the North American Project to Evaluate Soil Health Measurements (NAPESHM). Results showed that type of cropping system, intensity of physical …
Tiny Earth, Tinier Microbes: An Experiential Learning Approach To Antibiotic Discovery, Emily Kassing
Tiny Earth, Tinier Microbes: An Experiential Learning Approach To Antibiotic Discovery, Emily Kassing
Honors Program: Senior Projects (Public)
Antimicrobial resistance is one of the greatest global health challenges of the 21st century as antibiotic discovery has slowed even as scientific knowledge about AMR has progressed. At the same time, science education has turned to active learning approaches like CUREs, or course-based undergraduate research experiences, to achieve educational objectives while engaging students in real-life research. The Tiny Earth Project is a global research initiative that seeks to crowdsource antibiotic discovery by recruiting undergraduate students to screen soil samples for antibiotic producers. The goal of this study was to determine the viability of translating the Tiny Earth programming to …
Characterization Of Streptomyces Nymphaeiformis Sp. Nov., And Its Taxonomic Relatedness To Other Polyhydroxybutyrate-Degrading Streptomycetes, Gary R. Hix, Muhammad S. Khan, Mikayla T. Miller, Elisha C. Napier, Allison L. O'Brien, Roger P. White, Stephen F. Baron Ph.D.
Characterization Of Streptomyces Nymphaeiformis Sp. Nov., And Its Taxonomic Relatedness To Other Polyhydroxybutyrate-Degrading Streptomycetes, Gary R. Hix, Muhammad S. Khan, Mikayla T. Miller, Elisha C. Napier, Allison L. O'Brien, Roger P. White, Stephen F. Baron Ph.D.
Biology Faculty Scholarship
A polyhydroxybutyrate (PHB)-degrading actinomycete, strain SFB5AT, was identified as a species of Streptomyces based on its membrane fatty acid profile and the presence of LL-diaminopimelic acid in the cell wall. It formed sporulating mycelia on most agar media, but flat or wrinkled, moist colonies on trypticase soy agar. Spores were smooth, cylindrical, and borne on long, straight to flexuous chains. It produced a light brown diffusible pigment, but not melanin. Comparison of genomic digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values indicated that strain SFB5AT was related to Streptomyces litmocidini JCM 4394T , Streptomyces …
Development Of A Methodology For The Quantification Of Reaerosolization Of A Biological Contaminant Surrogate Particle From Military Uniform Fabric, George D. Cooksey
Development Of A Methodology For The Quantification Of Reaerosolization Of A Biological Contaminant Surrogate Particle From Military Uniform Fabric, George D. Cooksey
Theses and Dissertations
During a mass casualty medical evacuation after a bioaerosol attack, a decontamination method is needed that is effective at both decontamination and preventing the secondary hazard of biological particles reaerosolizing from contaminated clothing. However, neither the efficacy of current decontamination methods nor the risk of biological particle reaerosolization is significantly explored in existing literature. The goals of this thesis were to develop a repeatable methodology to quantify the reaerosolization of a biological contaminate off Airman Battle Uniform (ABU) fabric swatches, and to test the efficacy of one decontamination method (high-volume, low-pressure water) using 1 mpolystyrene latex (PSL) spheres as a …
Your Next Celebration At Us National Parks: A Case Emphasizing Lyme Neuroborreliosis (Bannwarth Syndrome), Ganesh Arun, Farhan Ali, Sowmya Srinivas, Harsha Surath, Justin Nistico, Dayakar Reddy
Your Next Celebration At Us National Parks: A Case Emphasizing Lyme Neuroborreliosis (Bannwarth Syndrome), Ganesh Arun, Farhan Ali, Sowmya Srinivas, Harsha Surath, Justin Nistico, Dayakar Reddy
Advances in Clinical Medical Research and Healthcare Delivery
Introduction:
Bannwarth syndrome is synonymous with Lyme neuroborreliosis. The neurological component consists of neuropathy, radicular pain, and lymphocytic pleocytosis. This is due to inflammation of the nerve fibers by Borrelia Burgdorferi. Borrelia Borgdorferi is a spirochete bacteria transmitted hematogenously from the Ixodes tick vector to the human host. The commonly known Lyme disease is diagnosed with symptoms of arthritis, heart block, and integumentary signs. Lyme disease can present as early disseminated or late manifestations of disease. Bannwarth syndrome takes it a step further and emphasizes the neurologic sub set of symptoms. The Centers for Disease Control and Prevention (CDC) estimates …
The Coxsackievirus And Adenovirus Receptor Has A Short Half-Life In Epithelial Cells, Poornima Kotha Lakshmi Narayan, James M. Readler, Mahmoud S. Alghamri, Trisha L. Brockman, Ray Yan, Priyanka Sharma, Vladislav Snitsarev, Katherine J.D.A Excoffon, Abimbola O. Kolawole
The Coxsackievirus And Adenovirus Receptor Has A Short Half-Life In Epithelial Cells, Poornima Kotha Lakshmi Narayan, James M. Readler, Mahmoud S. Alghamri, Trisha L. Brockman, Ray Yan, Priyanka Sharma, Vladislav Snitsarev, Katherine J.D.A Excoffon, Abimbola O. Kolawole
Department of Biology Faculty Scholarship and Creative Works
The coxsackievirus and adenovirus receptor (CAR) is an essential cellular protein that is involved in cell adhesion, cell signaling, and viral infection. The 8-exon encoded isoform (CAREx8) resides at the apical surface of polarized epithelia, where it is accessible as a receptor for adenovirus entering the airway lumen. Given its pivotal role in viral infection, it is a target for antiviral strategies. To understand the regulation of CAREx8 and determine the feasibility of receptor down regulation, the half-life of total and apical localized CAREx8 was determined and correlated with adenovirus transduction. Total and apical CAREx8 has a relatively short half-life …
The Use Of Probiotic Applications In Early Life Stages To Mitigate Batrachochytrium Dendrobatidis Infections In Rana Luteiventris (Columbia Spotted Frogs), Autumn N. Holley
The Use Of Probiotic Applications In Early Life Stages To Mitigate Batrachochytrium Dendrobatidis Infections In Rana Luteiventris (Columbia Spotted Frogs), Autumn N. Holley
2022 Symposium
Chytridiomycosis, an amphibian skin disease caused by a chytrid fungal pathogen, Batrachochytrium dendrobatidis (Bd), has been linked to global amphibian declines. Some amphibian populations are resistant to severe infection due to symbiotic antifungal skin bacteria, but attempts to develop probiotics from these bacteria have been inconsistently successful because bacteria fail to persist on the skin. Studies have largely been conducted on adult and juvenile amphibians, despite amphibians having fewer known mechanisms for microbiome regulation prior to metamorphosis. We hypothesize that probiotics will persist longer and thus be more effective against pathogen infection if they are applied at an early life …
Novel Microbe-Resistant Clay Dressing For Healing Burn Wounds, Kasey L. Rigby
Novel Microbe-Resistant Clay Dressing For Healing Burn Wounds, Kasey L. Rigby
Honors Undergraduate Theses
Every year, about 550,000 patients receive medical attention for minor and major burns in the United States.1 In 2020, it was estimated that 11 million people worldwide suffered from burn injuries, with 150,000 of those burns being fatal.2 Burns are among the most painful and debilitating recalcitrant wounds that can often turn terminal when infection occurs. The different grades for burns that we aim to treat are first, second, and third degrees.2 Each burn type is susceptible to secondary infection that can be life threatening, and as a result, are extensively treated with antimicrobial agents.2 At present, …
Degradation And Nitrogen Cycling In The Context Of Biodiversity-Ecosystem Function Relationships In The Inquiline Bacterial Community Of Darlingtonia Californica, Megan Teigen
Cal Poly Humboldt theses and projects
Biodiversity-ecosystem function (BEF) research aims to explain how species and their environments interact with each other. Microbial communities engage in vital biogeochemical pathways in a variety of natural ecosystems, and yet there are large knowledge gaps about the specific metabolic pathways in which they are involved. Degradation specifically contributes to nitrogen cycling globally through the breakdown of large organic nitrogen compounds into small inorganic nitrogen that is necessary for the survival of many other organisms. In this study, I focused on the degradative function of the inquiline microbial communities found within the carnivorous pitcher plant, Darlingtonia californica. Darlingtonia grows in …
Evidence For Metabolic Diversity In Meso-Neoproterozoic Stromatolites (Vazante Group, Brazil), Flavia Callefo, Fresia Ricardi-Branco, Mirian Mírian Liza Alves Forancelli Pacheco, Alexandre Ribeiro Cardoso, Nora Noffke, Verônica De Carvalho Teixeira, Itamar Tomio Neckel, Lara Maldanis, Emma Bullock, Dina Bower, Adalene Moreira Silva, Dario Ferreira Sanchez, Fabio Rodrigues, Douglas Galante
Evidence For Metabolic Diversity In Meso-Neoproterozoic Stromatolites (Vazante Group, Brazil), Flavia Callefo, Fresia Ricardi-Branco, Mirian Mírian Liza Alves Forancelli Pacheco, Alexandre Ribeiro Cardoso, Nora Noffke, Verônica De Carvalho Teixeira, Itamar Tomio Neckel, Lara Maldanis, Emma Bullock, Dina Bower, Adalene Moreira Silva, Dario Ferreira Sanchez, Fabio Rodrigues, Douglas Galante
OES Faculty Publications
Deciphering the evolution of ecological interactions among the metabolic types during the early diversification of life on Earth is crucial for our understanding of the ancient biosphere. The stromatolites from the genus Conophyton cylindricus represent a datum for the Proterozoic (Meso to Neoproterozoic) on Earth. Their typical conical shape has been considered a result of a competition between microorganisms for space, light and nutrients. Well-preserved records of this genus from the "Paleontological Site of Cabeludo ", Vazante Group, São Francisco Craton (Southern Brazil) present in situ fossilized biofilms, containing preserved carbonaceous matter. Petrographic and geochemical analyses revealed an alternation between …
Defining The Realized Niche Of The Two Major Clades Of Trichodesmium: A Study On The West Florida Shelf, Kristina A. Confesor, Corday R. Selden, Kimberly E. Powell, Laura A. Donahue, Travis Mellett, Salvatore Caprara, Angela N. Knapp, Kristen N. Buck, P. Dreux Chappell
Defining The Realized Niche Of The Two Major Clades Of Trichodesmium: A Study On The West Florida Shelf, Kristina A. Confesor, Corday R. Selden, Kimberly E. Powell, Laura A. Donahue, Travis Mellett, Salvatore Caprara, Angela N. Knapp, Kristen N. Buck, P. Dreux Chappell
OES Faculty Publications
The cyanobacterium Trichodesmium plays an essential role supporting ocean productivity by relieving nitrogen limitation via dinitrogen (N-2) fixation. The two common Trichodesmium clades, T. erythraeum and T. thiebautii, are both observed in waters along the West Florida Shelf (WFS). We hypothesized that these taxa occupy distinct realized niches, where T. thiebautii is the more oceanic clade. Samples for DNA and water chemistry analyses were collected on three separate WFS expeditions (2015, 2018, and 2019) spanning multiple seasons; abundances of the single copy housekeeping gene rnpB from both clades were enumerated via quantitative PCR. We conducted a suite of statistical …
Microbial Labilization And Diversification Of Pyrogenic Dissolved Organic Matter, Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, Patrick G. Hatcher
Microbial Labilization And Diversification Of Pyrogenic Dissolved Organic Matter, Aleksandar I. Goranov, Andrew S. Wozniak, Kyle W. Bostick, Andrew R. Zimmerman, Siddhartha Mitra, Patrick G. Hatcher
Chemistry & Biochemistry Faculty Publications
With the increased occurrence of wildfires around the world, interest in the chemistry of pyrogenic organic matter (pyOM) and its fate in the environment has increased. Upon leaching from soils by rain events, significant amounts of dissolved pyOM (pyDOM) enter the aquatic environment and interact with microbial communities that are essential for cycling organic matter within the different biogeochemical cycles. To evaluate the biodegradability of pyDOM, aqueous extracts of laboratory-produced biochars were incubated with soil microbes, and the molecular changes to the composition of pyDOM were probed using ultrahigh-resolution mass spectrometry (Fourier transform–ion cyclotron resonance–mass spectrometry). Given that solar irradiation …
The Influence Of Salinity On The Structure And Function Of Soil Prokaryotic Communities In Coastal Freshwater Wetlands, Joseph C. Morina Ii
The Influence Of Salinity On The Structure And Function Of Soil Prokaryotic Communities In Coastal Freshwater Wetlands, Joseph C. Morina Ii
Theses and Dissertations
Microbial communities are critical biological components of the world’s ecosystems, and their respiratory pathways are directly involved in the biogeochemical cycling of essential nutrients. As genomic technologies advance, allowing for more detailed profiling of microbial communities, efforts have successfully linked microbial community composition to ecosystem-level functions and have shown microbial communities are susceptible and resistant to disturbance events. The goal of this dissertation is to address the temporal scales in which microbial communities respond to the disturbance of salinization, and the repercussions this has on microbially-meditated carbon and nitrogen cycling. Coastal freshwater wetlands are an excellent study system to investigate …
Drivers Of 20th Century Sea-Level Change In Southern New Zealand Determined From Proxy And Instrumental Records, Ed Garrett, W. Roland Gehrels, Bruce W. Hayward, Rewi Newnham, Maria J. Gehrels, Craig J. Morey, Sönke Dangendorf
Drivers Of 20th Century Sea-Level Change In Southern New Zealand Determined From Proxy And Instrumental Records, Ed Garrett, W. Roland Gehrels, Bruce W. Hayward, Rewi Newnham, Maria J. Gehrels, Craig J. Morey, Sönke Dangendorf
CCPO Publications
In this paper we present new proxy-based sea-level reconstructions for southern New Zealand spanning the last millennium. These palaeo sea-level records usefully complement sparse Southern Hemisphere proxy and tide-gauge sea-level datasets and, in combination with instrumental observations, can test hypotheses about the drivers of 20th century global sea-level change, including land-based ice melt and regional sterodynamics. We develop sea-level transfer functions from regional datasets of salt-marsh foraminifera to establish a new proxy-based sea-level record at Mokomoko Inlet, at the southern tip of the South Island, and to improve the previously published sea-level reconstruction at Pounawea, located about 110 km to …
Microbial Communities And Nitrogen Dynamics In Prairie And Cropland Soils, Bikram Kumar Das
Microbial Communities And Nitrogen Dynamics In Prairie And Cropland Soils, Bikram Kumar Das
Electronic Theses and Dissertations
Soil microbial communities are affected by many factors, such as soil nitrogen (N) and the quantity of grass-root exudates, changing seasons, fertilization method, plant diversity, and their origin. This holds for both natural and fertilized soils. This research was intended to expand the current understanding of soil microbial interactions associated with ecological functions. The objectives of the research were (I) to characterize prokaryotic soil communities, estimate functional potential, and quantify nitrogen cycle-associated prokaryotic gene expressions across three phases of the growing season, (II) to explore the diazotrophic community composition in a natural system using nifH sequencing as well as 16S …
From Thermal Springs To Subway Benches: Exploring The Diversity Of Carbon Monoxide Dehydrogenases Through Metagenomes, Phylogenetics, And Machine Learning, Isaac Bigcraft
Dissertations, Master's Theses and Master's Reports
Carbon monoxide is well known as a toxic gas but can also be an important input and intermediary for microbial metabolisms. Carbon monoxide dehydrogenases (CODHs) serve as key enzyme complexes for a variety of microbial carbon monoxide (CO) utilization pathways. Such pathways include the Wood-Ljungdahl pathway, which is important in methanogenesis and acetogenesis, metal and sulfate reduction pathways, hydrogen production, and others. The CODH enzymes allow microbes to turn the traditionally toxic waste gas of CO into a useful carbon and energy source. Despite the flexibility of CODH enzymes, the use of carbon monoxide is still believed to be a …
Genomic Analysis Of Acetoanaerobium Sp. Vlb-1, An Anaerobic Bacterium Isolated From Nebraska's Eastern Saline Wetlands, Claire Martin
Genomic Analysis Of Acetoanaerobium Sp. Vlb-1, An Anaerobic Bacterium Isolated From Nebraska's Eastern Saline Wetlands, Claire Martin
Honors Program: Senior Projects (Public)
Through the analysis of genetic code, the genomic and physiological characteristics of an environmental anaerobic bacterial isolate, Acetoanaerobium sp. strain VLB-1, can be determined and significant pathways can be identified in its significance to the environment. This particular organism was isolated from the Eastern Saline Wetlands in Lincoln, NE. With this isolate, an investigation into elemental and amino acid cycling via the Stickland reaction and the Wood-Ljungdahl pathway was conducted to determine possible metabolic products. The Stickland reaction is a relatively newly discovered pathway, observed in the genus Clostridium. A. sticklandii is the main model for this method of …
Footprints On The Prairie: Examining The Interlocking Land Histories Of The Liberty Prairie Reserve, Illinois, Anna M. Burns
Footprints On The Prairie: Examining The Interlocking Land Histories Of The Liberty Prairie Reserve, Illinois, Anna M. Burns
Scripps Senior Theses
This thesis begins with the local history of the Liberty Prairie, the land where I conducted the ecological field-work that I later discuss in my second thesis on soil microbiome diversity (“Examining Soil Microbial Diversity in Transition Zones Between Corn Fields and Restored Prairie in the Upper Midwest"). I examine the Indigenous histories of the land, and the conflicts between the Bodwéwadmi and Euro-American settlers that resulted in the land being farmed for cattle, corn, and soy for over a hundred and fifty years. I then take a step back and analyze the broader historical contexts of Midwestern Corn Belt …
Examining Soil Microbial Diversity In Transition Zones Between Corn Fields And Restored Prairie In The Upper Midwest, Anna M. Burns
Examining Soil Microbial Diversity In Transition Zones Between Corn Fields And Restored Prairie In The Upper Midwest, Anna M. Burns
Scripps Senior Theses
Prairies were once the largest ecosystem in North America, but agriculture and settlement has destroyed up to 99% of their pre-colonization extent. Prairie restorations are a strategy to recover the biodiversity and carbon sequestration functions of these grasslands, but typically occur in isolated strips between agricultural fields. My thesis analyzes how effective prairie restorations in the Liberty Prairie (northeastern Illinois) are at recovering the diversity of the prairie soil microbiome, focusing on verrucomicrobia abundance, alpha diversity, and soil physical characteristics.
An Integrative Investigation Of The Synechococcus A/B Clade During Adaptive Radiation At The Upper Thermal Limit Of Phototrophy, Christopher L. Pierpont
An Integrative Investigation Of The Synechococcus A/B Clade During Adaptive Radiation At The Upper Thermal Limit Of Phototrophy, Christopher L. Pierpont
Graduate Student Theses, Dissertations, & Professional Papers
Thermophilic microorganisms have been scientifically observed since the early nineteenth century and have spurred many questions about the limits of life and the capacity of organisms to survive extreme conditions. Decades of research on thermophile proteins and genomes have yielded several proposed correlates of temperature that may contribute to adaptation of bacteria and archaea to high temperature. However, many of the generalizations reported are drawn from analyses of deeply divergent taxa or from individual case studies in isolation from mesophilic relatives. Members of the Synechococcus A/B (SynAB) group are the only cyanobacteria with members able to grow above 65 °C …
Biodegradation Of Rubber Particles In Soil: Using Acclimated Bacteria Isolated From Kansas Soil To Degrade Cryogrinds In Slurry, Shane Graham
Williams Honors College, Honors Research Projects
This study investigated the viability of bioremediating rubber cryogrind using enriched indigenous bacteria. To begin the experiment, soils from three highway roadside locations in Kansas, KS 96 and West, KS 400 and 143rd, and 199th, were collected and transported to the lab to be studied. An initial soil characterization was run on the soil samples using distilled (DI) water mixture and 0.01 M CaCl2 to assess conductivity. The soils were tested to gather a baseline of the relationship between pH and conductivity and the impact of its distance from the roadside. Bacteria were isolated from …
The Influence Of Hydrogen Peroxide On The Enrichment Of Fe(Iii) Reducing Bacteria From Acid Mine Drainage, Susami Seth
The Influence Of Hydrogen Peroxide On The Enrichment Of Fe(Iii) Reducing Bacteria From Acid Mine Drainage, Susami Seth
Williams Honors College, Honors Research Projects
It is hypothesized that the ocean of Europa, a Jupiter moon, hosts bacteria on its oceanic floor. Understanding how Fe(III) reducing bacteria (FeRB) from AMD utilize organic materials within its surrounding environment outlines how FeRB could thrive and tolerate extreme conditions. FeRB are known to tolerate metals and highly reactive oxidants species (ROS), but in this experiment, H2O2 was the experimental factor to further test FeRB tolerance. H2O2 is a common ROS and is damaging to living material such as proteins, DNA, and RNA. A range of H2O2 concentrations were fed …
Anthropogenic Disturbance Regimes Impact The Microbial And Chemical Composition Of Soils And Sediments Across Ecosystems, Gregory D. Martin
Anthropogenic Disturbance Regimes Impact The Microbial And Chemical Composition Of Soils And Sediments Across Ecosystems, Gregory D. Martin
Graduate Theses, Dissertations, and Problem Reports (ETD)
Human activities have led to profound changes in the climate and environment, fundamentally changing global carbon and nitrogen cycles. Ongoing conversion of wildland for human use and the intensification of agricultural systems have dire consequences for biodiversity and the ecosystem services that support society. While natural disturbance regimes are important for the long-term maintenance of native biodiversity and ecosystem function, many disturbances are becoming increasingly frequent due to anthropogenic activities. Increasing the frequency, intensity, or duration of disturbances can prevent ecosystems from returning to their previous equilibria. Disturbance-induced changes to the local environment shape microbial communities, which in turn govern …
Exertional Heat Stroke In A Male High School Runner With Disordered Eating: A Disablement Model Case Study, Brittni G. Hoover, Rebecca M. Hirschhorn, Allison B. Smith, Amy F. Hand
Exertional Heat Stroke In A Male High School Runner With Disordered Eating: A Disablement Model Case Study, Brittni G. Hoover, Rebecca M. Hirschhorn, Allison B. Smith, Amy F. Hand
Clinical Practice in Athletic Training
A 16-year-old male high school cross country athlete collapsed at the end of an afternoon 5K cross country meet. The patient was unable to stand, and after outwardly displaying confusion and agitation, his coaches sought assistance from the athletic trainers (ATs). The patient consumed one cup of water and a granola bar on the day of the meet. The ambient air temperature was 90°F with 69% humidity. Differential diagnoses included exertional heat stroke (EHS), exertional heat exhaustion, exertional collapse associated with sickle cell trait, heat syncope, dehydration, malnutrition, and hypoglycemia. Approximately 20 minutes passed between activation of the emergency action …