Biomedical Engineering and Bioengineering Commons^™

Europium-Doped Cerium Oxide Nanoparticles For Microglial Aβ Clearance And Homeostasis, Jatin Machhi, Pravin Yeapuri, Milica Markovic, Milankumar Patel, Wenhui Yan, Yaman Lu, Jacob D. Cohen, Mahmudul Hasan, Mai Mohamed Abdelmoaty, You Zhou, Huangui Xiong, Xinglong Wang, R. Lee Mosley, Howard E. Gendelman, Bhavesh D. Kevadiya

Nebraska Center for Biotechnology: Faculty and Staff Publications

Alzheimer’s disease (AD) is the most common neurodegenerative disorder. Pathologically, it is characterized by the deposition of amyloid beta (Aβ) plaques and presence of neurofibrillary tangles. These drive microglia neuroinflammation and consequent neurodegeneration. While the means to affect Aβ plaque accumulation was achieved how it affects disease outcomes remains uncertain. Cerium oxide (CeO₂) reduces Aβ plaques, oxidative stress, inflammation, and Alzheimer’s disease (AD) signs and symptoms. Specifically, CeO₂ nanoparticles (CeO₂NPs) induces free radical scavenging and cell protective intracellular signaling. This can ameliorate the pathobiology of an AD-affected brain. In order to investigate, CeO₂NPs …

Antiviral Polymers: A Review, Ali Akbari, Ashkan Bigham, Vahid Rahimkhoei, Sina Sharifi, Esmaiel Jabbari

Faculty Publications

Polymers, due to their high molecular weight, tunable architecture, functionality, and buffering effect for endosomal escape, possess unique properties as a carrier or prophylactic agent in preventing pandemic outbreak of new viruses. Polymers are used as a carrier to reduce the minimum required dose, bioavailability, and therapeutic effectiveness of antiviral agents. Polymers are also used as multifunctional nanomaterials to, directly or indirectly, inhibit viral infections. Multifunctional polymers can interact directly with envelope glycoproteins on the viral surface to block fusion and entry of the virus in the host cell. Polymers can indirectly mobilize the immune system by activating macrophages and …

Optimizing The Self-Healing Efficiency Of Hydrogel Encapsulated Bacteria In Concrete, Ricardo Hungria

LSU Master's Theses

Calcium carbonate precipitation through microbial means is a promising pathway for concrete self-healing technologies, mainly for its microcrack sealing attributes. The main goal of this project was to study and optimize the crack healing efficiency of hydrogel encapsulated bacteria in concrete. To achieve this purpose, Bacillus pseudiformus was implemented as the bacteria strain at a concentration of 10⁸ cells/ml. This bacterium strain along with yeast extract was combined along with three different mineral precursors corresponding to magnesium acetate, calcium lactate, and sodium lactate. All these three precursors were evaluated at two concentrations (67.76 mM/l and 75 mM/l). For each …

Fabrication Of Microfluidic Devices To Study Confined Collective Migration Of Breast Cancer Cells, Linh Luong

Symposium of Student Scholars

Cells in our body mostly exist in confined environments. They are surrounded by neighboring cells, tissues, and the extracellular matrix. The changes in these surrounding environments influence cell behaviors. Therefore, studying cell mechanics plays a significant role to understand how cancer cells migrate and what primary factors that control cancer metastasis. Many studies have been developed to study how cancer cells migrate in the body. However, these experiments in vivo are complicated and incredibly challenging. Another approach is to perform experiments in vitro instead. However, to obtain relevant results, a specific experimental apparatus must be designed to confine cells. Glass …

Design And Computational Validation Of A Shear Stress Bioreactor For Conditioning Vascular Tissue To Time-Varying Multidirectional Fluid Shear Stress, Rajeshwari Raja, Philippe Sucosky, Jason Shar

Symposium of Student Scholars

Design and Computational Validation of a Shear Stress Bioreactor for Conditioning Vascular Tissue to Time-Varying Multidirectional Fluid Shear Stress

Author: Rajeshwari Raja Mentor: Dr. Jason A. Shar Department of Mechanical Engineering Kennesaw State University 1100 South Marietta Pkwy SE, 30060

Altered biological environments and conditions, such as microgravity and pregnancy, can impact vascular blood flow and, in turn, generate fluid wall shear stress (WSS; frictional force generated on the tissue surface due to blood flow) abnormalities. These abnormalities are known to affect cardiovascular tissue biology and can be replicated experimentally using a cone-and-plate shear stress bioreactor. This device exposes tissue …

Development Of A Wearable Device For Monitoring And Predicting Human Health In Emergencies, Mukhriddin Arabboev, Shohruh Begmatov, Khabibullo Nosirov, Jean Chamberlain Chedjou, Kyandoghere Kyamakya

Technical science and innovation

In recent years, natural disasters and various similar emergencies have caused many people to leave this world early. The need for the use of modern technologies in emergencies is growing day by day. Various modern devices, techniques and methods are used in post-disaster search and rescue operations. The issue of finding a survivor is very important in post-disaster operations. The vital signs of humans are very important in determining the survival of humans. Heart Rate (HR), Blood Pressure (BP), Respiration rate (breathing rate), and Body Temperature (BT) values are considered four essential vital signs that must be measured regularly. In …

Effects Of Weight-Bearing On Tibiofemoral, Patellofemoral, And Patellar Tendon Kinematics In Older Adults, Vasiliki Kefala, Azhar A. Ali, Landon D. Hamilton, Erin M. Mannen, Kevin B. Shelburne

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Quantification of natural knee kinematics is essential for the assessment of joint function in the diagnosis of pathologies. Combined measurements of tibiofemoral and patellofemoral joint kinematics are necessary because knee pathologies, such as progression of osteoarthritis and patellar instability, are a frequent concern in both articulations. Combined measurement of tibiofemoral and patellofemoral kinematics also enables calculation of important quantities, specifically patellar tendon angle, which partly determines the loading vector at the tibiofemoral joint and patellar tendon moment arm. The goals of this research were to measure the differences in tibiofemoral and patellofemoral kinematics, patellar tendon angle (PTA), and patellar tendon …

Image Processing Algorithms For Detection Of Anomalies In Orthopedic Surgery Implants, Alexander William Wiese

Theses and Dissertations

Orthopedic implant procedures for hip implants are performed on 300,000 patients annually in the United States, with 22.3 million procedures worldwide. While most such operations are successfully performed to relieve pain and restore joint function for the duration of the patient's life, advances in medicine have enabled patients to outlive the life of their implant, increasing the likelihood of implant failure. There is significant advantage to the patient, the surgeon, and the medical community in early detection of implant failures.The research work presented in this thesis demonstrates a non-invasive digital image processing technique for the automated detection of specific arthroplasty …

Medical Manikin Augmented Reality Simulation (M2ars), Pauline Delacruz, Jacob Gibson, Daniel Howard, Jaclyn Peacock, Kendall Robbins

Modeling, Simulation and Visualization Student Capstone Conference

The Medical Manikin Augmented Reality Simulation (M2ARS) is an augmented reality simulation application built for the Microsoft HoloLens 2 that uses the principles of anatomy transfer to overlay human anatomical structures onto a medical manikin digitally. These structures currently consist of the skeletal, muscular, and circulatory systems. In addition, a model of the lungs and an animated heart are also available within the simulation. M2ARS allows the user to view these structures in a manner that is both visually and spatially accurate to the human body. This application contains two modes; an augmented reality mode, which uses a manikin, and …

A Preliminary Comparative Study Of Molecular Visualization Software For Education, Ruoming Shen

Modeling, Simulation and Visualization Student Capstone Conference

Chemistry and biology are sciences vital for understanding metabolic processes, developing disease treatments, and improving environmental conditions. With extensive knowledge of biochemistry, we can take advantage of a material’s unique chemical composition and properties in various applications. Visualization software is essential for analyzing complex chemical and biological structures and predicting their interactions with each other. This paper presents a preliminary study of three open source molecular visualization software tools - Visual Molecular Dynamics (VMD), Jmol, and Mol*, and evaluates their strengths and deficiencies. This paper utilizes the March Molecule of the Month, Vascular Endothelial Growth Factor (VEGF), from the Protein …

Multi-Modality Breast Mri Segmentation Using Nn-Unet For Preoperative Planning Of Robotic Surgery Navigation, Motaz Alqaoud, John Plemmons Md, Eric Feliberti Md, Facs, Krishnanand Kaipa, Siqin Dong, Gabor Fichtinger, Yimming Xiao, Michel Audette

Modeling, Simulation and Visualization Student Capstone Conference

Segmentation of the chest region and breast tissues is essential for surgery planning and navigation. This paper proposes the foundation for preoperative segmentation based on two cascaded architectures of deep neural networks (DNN) based on the state-of-the-art nnU-Net. Additionally, this study introduces a polyvinyl alcohol cryogel (PVA-C) breast phantom based on the segmentation of the DNN automated approach, enabling the experiments of navigation system for robotic breast surgery. Multi-modality breast MRI datasets of T2W and STIR images were acquired from 10 patients. Segmentation evaluation utilized the Dice Similarity Coefficient (DSC), segmentation accuracy, sensitivity, and specificity. First, a single class labeling …

Senior Subject Gait Analysis Using Self-Supervised Method, Haben Yhdego, Michel Audette

Modeling, Simulation and Visualization Student Capstone Conference

There are many issues regarding the technology used for fall detection gait analysis in the geriatric center of senior patients. The fall detection system used should examine the privacy of the patients and the flexibility of the system. Several researchers have developed fall detection using wearable sensors due to their flexibility and nature of privacy. Most of those developed methods are supervised deep learning methods. However, data annotation is expensive because we use camera video recording and playback of each participant’s recorded video to label the data. Moreover, labelling using a camera recording limits the flexible and private nature of …

Fumarate-Based Polymers: Oligo(Poly(Ethylene Glycol) Fumarate) And Poly(Butylene Fumarate) For Tissue Engineering Heart Valve And Bone Tissue, Christian T. Denny

Biomedical Engineering ETDs

Tissue engineering is an emerging field that came from the fields of medicine, materials science, and engineering. The foundation of tissue engineering uses a paradigm that incorporates cells, biomaterials, and exogenous factors to create living tissues for medical, pharmaceutical, and research purposes. Within the last 100 years, biomaterials have been developed to solve many medical and research problems. As biomaterials have developed throughout the years new materials have been developed to have specific properties appropriate for medical applications. Fumarate is a naturally derived molecule in the body and has been found useful for developing polyesters that can be crosslinked into …

Nanoparticle Quantification And Distribution On Fluorescently Coated Angioplasty Balloons, Allison Dobson Zieschang

Honors Capstones

No abstract provided.

Studying Dispersed Phase Holdup In A Pilot Plant Agitated Liquid–Liquid Mixer By Developing Online Expanded Laser Beam Based Technique, Kifah H. Abid, Jihane Mendil, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

Expanded Laser Transmission Technique (E-LTT), where a laser beam is used in conjunction with a beam expander large enough to cover the average drop size up to a few millimeters in the path of the laser in a liquid–liquid dispersion mixture, has been applied for online continuous measurement and investigation in a non-invasive manner of the drop phase volume fraction in an agitated flow mixer of a pilot plant scale. The limitations of beam scattering by the drops through the dispersion path were overcome by having liquids of matching refractive indices enabled by the temperature control system. This study reports …

Structural Health Monitoring Of Bioprinted Materials, Kathryn H. Mcintosh

Honors College Theses

Bioprinting is a new method that utilizes additive manufacturing to construct organs, tissues, and other biostructures. This method presents endless possibilities - less reliance on organ donors (according to the Health Resources and Services Administration, 17 people die each day waiting for an organ transplant in the U.S.), more transplant opportunities, and the ability to save significantly more lives. While bioprinting has opened a new frontier in the biomedical field, there may be some research issues that need to be addressed. For example, numerous researchers have focused on creating novel approaches to print complicated geometries. However, the structural integrity or …

Under-Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle-Based Approach For Microscale Cell Culture, Chao Li, Mouhita Humayun, Glenn M. Walker, Keon Young Park, Bryce Connors, Jun Feng, Molly C. Pellitteri Hahn, Cameron O. Scarlett, Jiayi Li, Yanbo Feng, Ryan L. Clark, Hunter Hefti, Jonathan Schrope, Ophelia S. Venturelli, David J. Beebe

Faculty and Student Publications

Oxygen levels in vivo are autonomously regulated by a supply–demand balance, which can be altered in disease states. However, the oxygen levels of in vitro cell culture systems, particularly microscale cell culture, are typically dominated by either supply or demand. Further, the oxygen microenvironment in these systems is rarely monitored or reported. Here, a method to establish and dynamically monitor autonomously regulated oxygen microenvironments (AROM) using an oil overlay in an open microscale cell culture system is presented. Using this method, the oxygen microenvironment is dynamically regulated via the supply–demand balance of the system. Numerical simulation and experimental validation of …

Analysis Of An Existing Method In Refinement Of Protein Structure Predictions Using Cryo-Em Images, Maytha Alshammari, Jing He, Willy Wriggers, Jiangwen Sun

College of Sciences Posters

Protein structure prediction produces atomic models from its amino acid sequence. Three-dimensional structures are important for understanding the function mechanism of proteins. Knowing the structure of a given protein is crucial in drug development design of novel enzymes. AlphaFold2 is a protein structure prediction tool with good performance in recent CASP competitions. Phenix is a tool for determination of a protein structure from a high-resolution 3D molecular image. Recent development of Phenix shows that it is capable to refine predicted models from AlphaFold2, specifically the poorly predicted regions, by incorporating information from the 3D image of the protein. The goal …

Identification Of Messenger Molecule For Immuno-Antibacterial Infection Drug Discovery With The Usage Of Bio-Ai, Minqiao (Lisa) Jin

Bioengineering Master's Theses

Facing the danger of Gram-positive bacterial infection, mammalian cells have their defense line. A functional proteomics study aided with Deep Learning indicates the direct interaction between collagen V from mammalian cell membrane and Sortase A which catalyzes the display of virulence factors on the gram positive bacteria. And CHO cell proteomes conducted with the use artificial intelligence via Tensorflow and found that the identified anti collagen V binds to Sortase A of S. aureus and regulates its monomer-homodimer equilibrium, which is responsible for the bacterial cell wall sorting activity. Our results suggest that the collagen V plays an instrumental role …

Engineering Stealthy Exosomes For Drug Delivery, Chris Olson, Mika Domingo

Bioengineering Senior Theses

Exosomes, a class of extracellular vesicles (EVs) are emerging as a new scientific and therapeutic tool for imaging, disease diagnostics, and drug delivery. Exosomes' excellent biological properties make them a strong candidate for surface modification as well as exogenous drug loading. While exosomes have excellent natural biocompatibility properties as well as low immunogenicity, they are still eliminated in the patient’s body through the immune system, mainly through phagocytosis by macrophages. In this report, we aim to aid exosomes in avoiding this elimination method by modifying them through surface display with antiphagocytic factors. We will use CD24 and CD47 “don't eat …

Accelerating Peripheral Nerve Regeneration Using Electrical Stimulation Of Selected Power Spectral Densities, Wei-Ming Yu, Madelyn Mccullen, Vincent Chiun-Fan Chen

Engineering Science Faculty Publications

Peripheral nerve injuries are common consequences of extremity trauma or chronic compression with a prevalence of 43.8 per 1 million people (on average) reported in the United States annually, accompanied by a yearly increase in cost of care. Patients suffering from these injuries require surgical procedures and rehabilitative strategies to reinforce their extensive recovery. Several studies have found that the application of electrical stimulation can accelerate peripheral nerve regeneration, thus shortening the time of peripheral nerve growth and reducing the cost of care (Willand et al., 2016). The electrical stimulation paradigms that effectively enhanced functional recovery in most studies employed …

Skin Phantom For Wearable Device Benchtop Testing, Laura Apolloni, Vindhya Mullapudi, Takumi Simon

Bioengineering Senior Theses

The biowerables constitute one of the fastests growing sectors of the medical device industry. Novel approaches for rapid prototyping have increased design and development speeds. However, in vivo testing that is currently used for many medical devices makes testing time-consuming, costly, and presents ethical issues. As an alternative, benchtop testing tools promise to alleviate these concerns. Artificial tissue phantoms that are capable of mimicking the characteristics of human tissues are required for demonstrating a medical device’s safety and efficacy in benchtop tests. While there are many hydrogels that are able to mimic these relevant properties of human tissue, creating a …

Impulse, Spring 2022, University Marketing And Communications, Jerome J. Lohr College Of Engineering

Impulse (Jerome J. Lohr College of Engineering Publication)

2 | Ahmed Leads Construction and Operations Management
4 | Faculty News
8 | Kelley Steps Aside After 44 Years
12 | Boggs Retires From Mechanical Engineering
14 | Looking At Covid-19 Numbers
16 | Students Help College of Nursing
18 | Midwest Applied Materials Symposium Debuts
20 | Fourth Data Science Event Takes Place
24 | College Achievements
26 | Hard Work Pays Off
28 | Spotlight Shines on Students
30 | Mentoring Program Takes Off
32 | Robotics Club Busy With Activities
34 | The Numbers
36 | Brown, Sieve Honored
38 | Alumna Leads NASA Division
40 …

Overcoming Supply Disruptions During Pandemics By Utilizing Found Hardware For Open Source Gentle Ventilation, S. Oberloier, N. Gallup, J. M. Pearce

Michigan Tech Publications, Part 1

This article details the design of an open source emergency gentle ventilator (gentle-vent) framework that can be used in periods of scarcity. Although it is not a medical device, the system utilizes a wide range of commonly-available components that are combined using basic electronics skills to achieve the desired performance. The main function of the gentle-vent is to generate a calibrated pressure wave at the pump to provide support to the patient's breathing. Each gentle-vent permutation was tested using a DIY manometer as it would be utilized in the field in low-resource settings and validated with an open source VentMon. …

Process- And Product-Related Foulants In Virus Filtration, Solomon Isu, Xianghong Qian, Andrew L. Zydney, S. Ranil Wickramasinghe

Biomedical Engineering Faculty Publications and Presentations

Regulatory authorities place stringent guidelines on the removal of contaminants during the manufacture of biopharmaceutical products. Monoclonal antibodies, Fc-fusion proteins, and other mammalian cell-derived biotherapeutics are heterogeneous molecules that are validated based on the production process and not on molecular homogeneity. Validation of clearance of potential contamination by viruses is a major challenge during the downstream purification of these therapeutics. Virus filtration is a single-use, size-based separation process in which the contaminating virus particles are retained while the therapeutic molecules pass through the membrane pores. Virus filtration is routinely used as part of the overall virus clearance strategy. Compromised performance …

The Submission Of A Section 513(G) Request For Information, Morgan Ashley Lano

Theses and Dissertations

The Food and Drug Administration designates all medical devices into one of three general classes contingent on their intended use, indications for use, and potential risk to the user. This classification dictates the further path the device must take to be approved for the commercial market. Section 513(g) of the Federal Food, Drug, and Cosmetic Act (21 U.S.C. 360c(g)) is submitted in order to gain the agency’s unofficial classification and suggested regulatory requirements. The Coagulation Companion (MicroVide) is a device designed to fluorescently quantify a key enzyme involved in the coagulation cascade, plasmin, in pediatric patients. clot formation and degradation …

A Meshless Approach To Computational Pharmacokinetics, Anthony Matthew Khoury

Doctoral Dissertations and Master's Theses

The meshless method is an incredibly powerful technique for solving a variety of problems with unparalleled accuracy and efficiency. The pharmacokinetic problem of transdermal drug delivery (TDDD) is one such topic and is of significant complexity. The locally collocated meshless method (LCMM) is developed in solution to this topic. First, the meshless method is formulated to model this transport phenomenon and is then validated against an analytical solution of a pharmacokinetic problem set, to demonstrate this accuracy and efficiency. The analytical solution provides a locus by which convergence behavior are evaluated, demonstrating the super convergence of the locally collocated meshless …

Modelling And Validation Of A Gas-Solid Fluidized Bed Using Advanced Measurement Techniques, Sebastián Uribe, Haidar Taofeeq, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

With a Euler-two-phase (E2P) approach, through computational fluid dynamics (CFD) techniques, a mathematical model for the prediction of the local hydrodynamic behavior of a gas-solid fluidized bed was implemented. Simulations are conducted for a fluidized bed of 0.14 m internal diameter packed with Gerdart B glass beads particles, with an average diameter of 365 μm, at dimensionless inlet velocities ranging from (Formula presented.). The implemented model considers the multiphase and multiscale interactions through the inclusion of three sub-models, which allows the model to have a broad range of applicability. Predictions were compared against experimental measurements reported on previous contributions for …

Baseball Pitching Arm Three-Dimensional Inertial Parameter Calculations From Body Composition Imaging And A Novel Overweight Measure For Youth Pitching Arm Kinetics, Dalton J. Jennings, Scott K. Reaves, Jeffrey Sklar, Colin Brown, John Mcphee, Scott Hazelwood, Stephen M. Klisch

Biomedical Engineering

Many baseball pitching studies have used inverse dynamics to assess throwing arm kinetics as high and repetitive kinetics are thought to be linked to pitching injuries. However, prior studies have not used participant-specific body segment inertial parameters (BSIPs), which are thought to improve analysis of high-acceleration motions and overweight participants. This study's objectives were to (1) calculate participant-specific BSIPs using dual energy X-ray absorptiometry (DXA) measures, (2) compare inverse dynamic calculations of kinetics determined by DXA-calculated BSIPs (full DXA-driven inverse dynamics) against kinetics using the standard inverse dynamics approach with scaled BSIPs (scaled inverse dynamics), and (3) examine associations between …

Noninvasive In Vivo Optoacoustic Imaging Of Alcohol Use Disorder Using A Mouse Model Of Alcohol Use Disorder, Augustine Meombe Mbolle

USF Tampa Graduate Theses and Dissertations

This research has two parts. The first part focuses on the use of photoacoustic imaging (PAI) to study alcohol-induced effects in the cerebral vasculature of selectively bred alcohol-preferring mice. Part two extends the application of PAI by developing a novel Photoacoustic imaging guided system for repetitive low intensity focused ultrasound (PAI-LIFU) stimulation treatment for alcohol use disorder in crossed high alcohol preferring (cHAP) mice.

Photoacoustic imaging is an emerging hybrid non-invasive optical imaging modality which relies on optical absorption contrast to visualize deep tissue structures and function. It combines the high contrast associated with pure optical imaging and the high …