Biomedical Engineering and Bioengineering Commons^™

Design Concept For Low-Cost Management Of Early Medial Or Lateral Osteoarthritis, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

Background: Asymmetrical joint space narrowing occurs in many cases of knee osteoarthritis (OA). The objective of the present study is to elucidate the biomechanics of lateral wedges in shoes used to widen the medial joint space in predominantly medial OA, and the biomechanics of medial wedges in shoes used to widen the lateral joint space in predominantly lateral OA. Methods: Medial or lateral shift of the center of weight bearing of the foot is largely offset by movement of the flexible hip joint, which changes the tilt angle of the femoral head in the frontal plane. The altered tilt can …

Analyzing Ethics Education Strategies In Biomedical Engineering Programs, Sanjana Prashanth

The Journal of Purdue Undergraduate Research

No abstract provided.

Validation Of Innovative Method Of Murine Vertebral Compression Testing, Sarah Staller

The Journal of Purdue Undergraduate Research

Murine vertebral compression testing is a common technique to quantify trabecular bone biomechanics. Having a precise method of vertebral compression is important for aiding researchers in making clinically relevant discoveries in musculoskeletal research. While many methods exist in literature, there has yet to be established a universal protocol for this procedure. Many challenges exist in vertebral compression, such as the irregular shape of the vertebral body (trabecular region of interest), uneven endplate surface morphology, and surrounding cortical processes. Therefore, the aim of this study was to develop a new method of vertebral compression that accounts for these factors and to …

The Automation Of Lamp Biomolecular Assays Using The Eppendorf Epmotion™ 5075 Robotic Pipettor, Shamalaa Sathiasealan

The Journal of Purdue Undergraduate Research

Loop-mediated isothermal amplification (LAMP) is a nucleic acid amplification technique known for its specificity and efficiency in less controlled environments than laboratories. Designing novel LAMP reagents requires strict contamination control, and unlike the more commonly automated polymerase chain reaction, LAMP’s heightened sensitivity poses unique challenges to automation. To address this, we optimized automation procedures for LAMP using a robotic pipettor without altering the core assay itself. This project focuses on minimizing contamination using sealed plates, reducing operator intervention by automating pipetting, and preventing enzyme degradation using cooling plates. Our approach employs pre-slit pierceable seals and cooling blocks to prevent cross-contamination …

Implications Of Noninvasive Blood Pressure Pumps On Mean Arterial Pressure, Sammie Miller

The Journal of Purdue Undergraduate Research

Noninvasive blood pressure pumps are recommended as the primary form of acquiring patient blood pressure to test for blood poisoning. The Philips IntelliVue Patient Monitor MP5, the Philips SureSigns VS4/VS3 Vital Signs Monitor, the Philips EarlyVue VS30 Vital Signs Monitor, the Philips IntelliVue Patent Monitor MP2/X2, the Philips IntelliVue Patent Monitor MMS, and the Philips IntelliVue Patent Monitor MP3/X3 were tested for accuracy. The control condition for hypotension was 95/55 (68) mmHg, normal blood pressure was 120/80 (93) mmHg, and hypertension was 155/85 (108) mmHg. The order of values is arrayed according to diastolic, systolic, and mean arterial pressure. The …

Exploring Interactive Robotic Music Therapy Systems For Rehabilitation: A Survey Paper, Hector A. Salinas Gordillo

Discovery Undergraduate Interdisciplinary Research Internship

Interactive robotic music therapy introduces an innovative opportunity, where human guided musical interaction with robotic systems can create adaptive and engaging therapeutic experiences. This survey explores the current state of research at the intersection of robotics, music, and rehabilitation, focusing on emerging technologies such as human robot interaction methods and system designs that help enable real time, interactive music therapy.

Potential patient groups include individuals undergoing motor or cognitive rehabilitation, such as those recovering from stroke, living with Parkinson’s disease, cerebral palsy, or other motor impairments, as well as individuals with developmental disorders or limited mobility.

Traditional rehabilitation exercises may …

Insights From A Simple Mathematical Model Of Autism Spectrum Disorders, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

This preliminary report explores insights about mechanisms of autism spectrum disorders (ASDs) gained from a mathematical model of interconnected clusters of excitatory neurons. This local, integrate-and-fire, spiking neural network is subjected to random noise from other populations of excitatory and inhibitory neurons outside the network. Its emergent behavior in response to different ratios of inhibitory to excitatory noise mimics several aspects of ASDs. The spiking neural network functions according to rules of classical neurophysiology, involving resting membrane potential, threshold potential, excitatory or inhibitory post-synaptic potentials, action potential, and refractory period. Key parameters include the incremental change in membrane potential, p …

Comparison Of Peening Effect Between Additive Manufacutred And Drawing Titanium Alloy, Hitoshi Soyama

15th International Conference on Shot Peening

Although additively manufactured (AM) metals are attractive materials, their remarkable weak fatigue properties are an obstacle to their practical application. Thus, post-processing to improve their fatigue properties is required. In the present study, powder bed fusion using laser sintering titanium alloy, i.e., PBF-LS/Ti6Al4V was treated by shot peening (SP), submerged laser peening (SLP), cavitation peening (CP), and fine particle bombarding (FPB), then the fatigue properties were investigated by a torsional fatigue test, comparing with drawing Ti6Al4V. It was revealed that the fatigue strength at 10⁷ was 446 ± 5 MPa for PBF-LS/Ti6Al4V treated by FPB+CP, 359 ± 9 MPa …

Fourier-Feature Mlp Toolkit For Gpu-Accelerated Cardiac-Mri 4dcmr Strain Analysis, Aarnav T. Sabale, Marco A. Prado, Craig J. Goergen

Discovery Undergraduate Interdisciplinary Research Internship

This paper explores the embedding of a Fourier-Feature—enhanced multiplayer perceptron(MLP-FEE) at the heart of a newly refactored python workflow for four-dimensional cardiac-MRI strain quantification demonstrating how a single, compact network can outperform traditional convolution and spline-based methods. The original code, capable of orientation normalization, displacement tracking, and finite-difference strain computation, has been translated and consolidated into pytorch. By injecting sinusoidal positional encodings at the network’s input layer supplied a rich set of high-frequency basis functions hence enabling multilayer MLP to resolve gradients that cubic splines and conventional CNNs typically blur or struggle with. Profiling on an Apple-silicon GPU shows interactive …

Utilizing Wearable Technology To Improve Pots Diagnostic Testing, Monique Watson, Damen Wilson, Matthew Ward

Discovery Undergraduate Interdisciplinary Research Internship

Postural orthostatic tachycardia syndrome (POTS) is a form of dysautonomia characterized by a heart rate (HR) increase ≥30 beats/minute (bpm) within 10 minutes of standing from a supine position, without a significant blood pressure drop. POTS can diminish quality of life with symptoms including tachycardia, headaches, and fatigue. Despite established diagnostic criteria, POTS is often underrecognized or misdiagnosed due to its episodic nature. Symptoms may not consistently be present during diagnostic testing, leading to false negatives during in-office testing. Wearables offer a promising solution through continuous physiological monitoring. Individuals with hypermobile Ehler-Danlos Syndrome (hEDS), a population in which POTS is …

Improving Echocardiographic Aortic Aneurysm Assessment In Marfan Syndrome Patients, Joshua Paik, Shubh P. Mehta, Samskrithi Sivakumar, Felix Dinklage, Ahhyun Lee, Benjamin J. Landis, Craig J. Goergen

Discovery Undergraduate Interdisciplinary Research Internship

Marfan syndrome (MFS) is a genetic connective tissue disorder caused by a variant of the fibrillin-1 (FBN1) gene, leading to abnormalities in organs reliant on tissue elasticity. Proximal thoracic aortic aneurysms (TAAs) are a major clinical concern, particularly in pediatric MFS patients, due to their risk of dissection or rupture. Diagnosis and monitoring of TAAs often depend on manual measurements of aortic root diameters from the parasternal long axis views of transthoracic echocardiograms. However, this method is prone to interobserver variability (IOV), which impacts consistency in clinical assessment. To mitigate these limitations, we developed a graphical user interface (GUI) that …

Sex-Dependent Differences In Cardiac Function And Strain In Doxorubicin-Induced Cardiomyopathy, Anna J. A. Webb, Bea O. Cabot, Aasish Chowdary, Wilhelm S. Smith, Benjamin Zeidler, Cortland H. Johns, Craig J. Goergen

Discovery Undergraduate Interdisciplinary Research Internship

Doxorubicin is a chemotherapeutic agent used to treat many types of cancer. While effective, doxorubicin can cause cardiomyopathy, a disease affecting the heart muscle. Although the effects of doxorubicin on the heart are well studied, the mechanisms leading to cardiomyopathy are not well understood. Previous studies have used murine models to study the cardiotoxicity of doxorubicin. These reports showed that cardiac dysfunction is more pronounced in male compared to female mice. The goal of this study is to further evaluate sex differences in doxorubicin induced cardiomyopathy using 4-dimensional strain mapping techniques. In this study, both female and male C57Bl/6J mice …

A Dna Damage Analysis Of Breast Cancer Cells Under Cyclic Mechanical Actuation, Maria C. Macias, Madison Howard, Luis Solorio

Discovery Undergraduate Interdisciplinary Research Internship

Metastasis is the leading cause of mortality in breast cancer, yet tumor cell behavior and their response to mechanical cues in the pre-metastatic niche remains poorly understood. This study investigates how breast cancer cells respond to strain mimicking lung tissue dynamics, with a focus on DNA damage. Using a custom-designed micro-actuating lung model, we cultured mApple at p53BP1 and H2B-GFP reporter cells on fibrillar fibronectin-coated substrates subjected to cyclic mechanical forces that simulate respiratory motion. A group of cells were treated with escalating concentrations of Niraparib (0.1–10 µM), a PARP inhibitor, as a positive control. To visualize and quantify DNA …

Selective Anti-Tumor And Normal Tissue Sparing Effects Of Flash Radiotherapy In A Simple Algebraic Model Of Radiochemical Kinetics, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

Background: This short paper presents the solution to an open problem in medical physics: how and when FLASH radiotherapy can have a selective anti-tumor effect. FLASH radiotherapy gives a single large dose of ionizing radiation to a cancer patient within a time span of a few milliseconds, unlike conventional radiotherapy which is divided into several dose fractions given weekly, each lasting about 10 minutes. In some animal models FLASH seems to improve tumor cell killing without damaging normal tissues. However, the mechanism of the selective anti-tumor effect remains elusive. Methods: To explore effects of tissue hypoxia in tumors, a model …

A Continuum Mechanical Model Of The Brain During Closed Head Injury, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

Exactly how traumatic axonal injury happens as a result of brief, intense acceleration of the head remains a mystery. The same can be said about traumatic microbleeds observed in MRI scans of people suffering concussions. This paper explores the mechanism of injury in terms of continuum biomechanics. A full-sized viscoelastic model of the human brain is developed that is subjected to impact with the rigid skull after crossing the subarachnoid space in response to brief, intense whole head acceleration, as might occur in falls or in contact sports. The brain is considered a compressible viscoelastic body of approximately uniform density, …

Change Of Carbohydrate Concentration In Reactors From Spring To Fall 2022 After Refrigeration, Amanda Ventura

The Journal of Purdue Undergraduate Research

No abstract provided.

Identification Of Conserved Eukaryotic Gene Products In Novel Mycobacteriophage, Brandon Mar, Jade Coxon, Lily Esterline, Sydney Clifford, Gabriella Burke, Mallory Motz, Alaina Gartner, Kioni Bush, James Lin, Lizzie Adams, Sophia Palant

The Journal of Purdue Undergraduate Research

Bacteriophage, a type of virus that infects bacteria, was discovered 100 years ago, initially isolated with a plaque assay in the 1940s. A mycobacteriophage is a subtype of bacteriophage that specifically infects mycobacteria. Since the introduction of DNA technologies and efforts to identify a plethora of bacteriophages, over 10,000 bacteriophages have been identified with 1,500 sequenced. Bacteriophage discovery has aided in genetic editing techniques, the development of synthetic biology tools, and disease treatment. However, to be able to expand on these capabilities, there is a need to identify more bacteriophages and sequence the genomes of these viruses, as they outnumber …

Jovial Family Farm Facilitates Intergenerational Learning Opportunities Through Urban Farming, Maera Williams

Purdue Journal of Service-Learning and International Engagement

Maera Williams is a sophomore in Environmental and Ecological Engineering at Purdue University. She joined the Engineering Projects in Community Service (EPICS) Urban Farming team as a freshman and now serves as project manager of ten undergraduate students collaborating with Jovial Family Farm to design and develop three indoor hydroponics systems for a laboratory space on their property in Broad Ripple, IN. Jovial Family Farm is a nonprofit organization founded by Drs. Bobbie and Brian Jellison with the mission to provide senior citizens, their families, and their communities with meaningful engagement opportunities on an intergenerational scale through urban agricultural activities. …

Lifetimes Of Stable Solutions To The Planar Three-Body Problem, Revealed In Patterns Of Fractal Art, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

This preliminary study explores statistical prediction of the lifetimes of apparently stable orbits of three particle masses, mutually attracted by gravity in the planar three body problem. Most orbits eventually break up, commonly in an end state with two of the bodies orbiting each other and moving together in one direction, with the third body moving in the opposite direction. Studies of such escape events led to a novel hypothesis, emerging from the intersection of probability, statistics, chaos, and fractal art. Statistical estimates of a constant probability of breakup per unit time allow prediction of the times of breakup of …

One Possible Solution To The Endo Challenge For Earlier, Low Cost, Non-Invasive Diagnosis Of Endometriosis, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

This short paper outlines a potential solution to the ENDO Challenge posed by the US National Institutes of Health to spur development of painless, noninvasive diagnostic tools for early diagnosis in women suffering needlessly from endometriosis. Endometriosis is a common condition caused by regurgitation of menses backwards through the Fallopian tubes from the uterine cavity into the abdominal cavity during menstruation. A few still viable endometrial cells then implant widely and unpredictably throughout the abdominal cavity and become established on the surfaces of internal organs and the abdominal wall. There they live and remain responsive to cyclic hormones. The resulting …

Feasibility Of Eeg Based Detection Of Ischemic Stroke: Studies In A Simple Computational Model, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

Objective: To explore quantitatively, using streamlined mathematics, how transmembrane potential differences across cell bodies of individual cortical neurons could act to produce the skin surface potentials of the electroencephalogram (EEG), and how ischemic stroke might be detected using EEGs in prehospital settings. Methods: From fundamental principles of electrostatics, anatomy, and physiology, one can characterize the strength of apparent dipoles created during activation of the cell bodies of individual cortical neurons. The transient dipole strength in a cortical neuron depends upon the size and surface area of its cell body, its capacitance, and the difference in transmembrane electrical potentials appearing across …

Protocol For Recording Neural Activity Evoked By Electrical Stimulation In Mice Using Two-Photon Calcium Imaging, Seungbin Park, Megan Lipton, Yujiao J. Sun, Maria Dadarlat

Purdue University Libraries Open Access Publishing Fund

Electrical stimulation provides a clinically viable approach for treating neurological disorders. Here, we present a protocol for recording neural activity evoked by electrical stimulation in mice using two-photon calcium imaging. We detail steps for chronically implanting a head fixation bar, a stimulating electrode, and a glass imaging window.We additionally describe the procedures for viral injections and awake head-fixed recordings.

Stretching The Limits Of Mri—Stretchable And Modular Coil Array Using Conductive Thread Technology, Folk W. Narongrit, Thejas Vishnu Ramesh, Joseph V. Rispoli

Purdue University Libraries Open Access Publishing Fund

Objective: We propose a modular stretchable coil design using conductive threads and commercially available embroidery machines. The coil design increases customizability of coil arrays for individual patients and each body part. Methods: Eight rectangular coils were constructed with custom-fabricated stretchable tinsel copper threads incorporated onto textile. Tune, match, and detune circuits were incorporated on the coil. A hook-and-loop mechanism was used to attach and decouple the modular coils. Phantom and in vivo scans at various anatomical flexion angles were acquired to highlight performance, and a temperature test was performed to verify safety. Results: In vivo MRI experiments demonstrate high sensitivity …

Facilitation In Pattern Motion Perception Of Self-Operated Stimuli Explained By Adaptive Contrast Normalization, Fulvio Missoni, Francesca Peveri, Andrea Canessa, Giulia Sedda, Vittorio Sanguineti, Silvio P. Sabatini

MODVIS Workshop

Movement can affect the way we make sense of complex visual information. To investigate this issue, we designed an experiment to assess changes of plaid motion perception threshold after a period of sensorimotor contingency experience. We found that movement training facilitates combination of elementary motion cues into a global motion percept. No changes in perceptual thresholds are observed in a passive visual condition. A Bayesian model suggested a reduction, after training, of the cross-talk between two gratings with unbalanced contrasts in corresponding sensory channels. To test plausible neural mechanisms for active reduction of cross-talk in cortical representation of complex visual …

Evaluation Of Fendiline Treatment In Vp40 System With Nucleation-Elongation Process: A Computational Model Of Ebola Virus Matrix Protein Assembly, Xiao Liu, Monica Husby, Robert V. Stahelin, Elsje Pienaar

Purdue University Libraries Open Access Publishing Fund

Ebola virus (EBOV) infection is threatening human health, especially in Central and West Africa. Limited clinical trials and the requirement of biosafety level-4 laboratories hinder experimental work to advance our understanding of EBOV and the evaluation of treatment. In this work, we use a computational model to study the assembly and budding process of EBOV and evaluate the effect of fendiline on these processes in the context of fluctuating host membrane lipid levels. Our results demonstrate for the first time that the assembly of VP40 filaments may follow the nucleation-elongation theory, as this mechanism is critical to maintaining a pool …

A Fractal Art Approach To The Three-Body Problem, Charles F. Babbs

Weldon School of Biomedical Engineering Faculty Working Papers

This preliminary study explores a new search strategy for identifying relatively stable vs. unstable solutions to the planar three-body problem in astrophysics, starting from the perspective of computer-generated art. Here classical Newtonian accelerations, speeds, and positions of all three bodies in a fixed plane are calculated. All three bodies are stationary at time zero, and the fate of the system is classified as reflecting either a bound stable orbit, a likely collision, or the ejection of one body. The initial position of one of the three bodies is varied in the image plane, and the outcome coded as one of …

Machine Embroidery Of Light-Emitting Textiles With Multicolor Electroluminescent Threads, Seungse Cho, Taehoo Chang, Tianhao Yu, Sunland L. Gong, Chi Hwan Lee

Purdue University Libraries Open Access Publishing Fund

Advances in electroluminescent threads, suitable for weaving or knitting, have opened doors for the development of light-emitting textiles, driving growth in the market for flexible and wearable displays. Although direct embroidery of these textiles with custom designs and patterns could offer substantial benefits, the rigorous demands of machine embroidery challenge the integrity of these threads. Here, we present embroiderable multicolor electroluminescent threads—in blue, green, and yellow—that are compatible with standard embroidery machines. These threads can be used to stitch decorative designs onto various consumer fabrics without compromising their wear resistance or light-emitting capabilities. Demonstrations include illuminating specific messages or designs …

Getting Off On The Right Foot: Addressing Severe Lymphedema Through A Novel Shoe Design, Carl R. Russell Iii, Anjollie M. Ramakrishna, Christopher H. Johns Iii, Alana V. Van Wijnen

Purdue Journal of Service-Learning and International Engagement

Engineering Projects in Community Service (EPICS) is a service-learning design program run by the College of Engineering at Purdue University. EPICS teaches students design skills by providing solutions for individuals, communities, and organizations in the surrounding area while mirroring engineering industry standards. Biomedical Engineering is a team within EPICS that strives to serve community partners through biomedical applications. HR is a patient who suffers from severe lymphedema. This condition results in her foot swelling three times its original size and requires her to utilize weekly leg compression therapy. Prescription shoes are slightly adequate. However, they lead to sores and pain …

Quantification Of Intervertebral Disc Strain From High-Resolution Ultrasound Imaging During Dynamic Loading, Diya Sakhrani

Discovery Undergraduate Interdisciplinary Research Internship

High-resolution ultrasound imaging employs high-frequency sound waves that can be used to noninvasively visualize the structures within the body, facilitating medical diagnosis without the need for open surgery. The widespread utilization of ultrasound is attributed to its affordability, non-invasive characteristics, and use of non-ionizing radiation. Nevertheless, ultrasound is prone to artifacts originating from the surrounding environment, gas-liquid interfaces, or dense tissue. These artifacts are common in ultrasound images and can cause dropout, noise, and degraded resolution. In this study we analyzed intervertebral disc (IVD) strain during two axial compression testing cycles of bovine intervertebral discs with a 2-dimensional direct deformation …

Characterizing Intervertebral Disc Strain Under Dynamic Loading Conditions Using Ultrasound Texture Analysis, Radhika Kulkarni

Discovery Undergraduate Interdisciplinary Research Internship

Herniated discs in the spine are a significant patient burden, with potential links to lower back and leg discomfort and a considerable impact on daily life. These discs, located between spinal vertebrae, are comprised of the annulus fibrosus (AF) and the nucleus pulposus (NP). Herniations happen when the NP protrudes through a full-thickness annular tear, possibly compressing spinal nerves. The mechanical factors underlying herniated discs are poorly understood, necessitating research into these mechanisms and accessible diagnostic techniques. Our study employs high-resolution ultrasound and texture correlation to quantify strain patterns in intervertebral discs during dynamic loading.

A motion segment from the …