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Full-Text Articles in Biomedical Engineering and Bioengineering

Affordable Thermal Control For Cell Culture Chambers: An Open-Source, Pid-Based Heating Module, Majid Rostami, Sesha Sai Ramineni, Sangyoon J. Han Sep 2026

Affordable Thermal Control For Cell Culture Chambers: An Open-Source, Pid-Based Heating Module, Majid Rostami, Sesha Sai Ramineni, Sangyoon J. Han

Michigan Tech Publications

Commercial environmental control systems for live cell imaging chambers frequently cost $10,000–20,000. This paper presents an open-source, PID-controlled heating module built entirely from off-the-shelf components for approximately $500. The system employs four adhesively mounted polyimide heater pads driven at 12 VDC through a closed-loop chain: a K-type thermocouple feeds a Delta DTB4848LV controller, whose analog output is converted to PWM and applied to the heaters via an opto-isolated MOSFET switch. The required heating power was determined through analytical thermal sizing and verified by finite-element simulation (ANSYS Mechanical), confirming that the cell culture region reaches 37°C at steady state. Bench testing …


Purification And Concentration Of Model Viruses Using Single-Pass Tangential Flow Filtration, Luis Alberto Mejía-Manzano, Lynn M. Manchester, Grace Wallis, Kan Wang, Bruce Lee, Michael Betenbaugh, Caryn Heldt Jul 2026

Purification And Concentration Of Model Viruses Using Single-Pass Tangential Flow Filtration, Luis Alberto Mejía-Manzano, Lynn M. Manchester, Grace Wallis, Kan Wang, Bruce Lee, Michael Betenbaugh, Caryn Heldt

Michigan Tech Publications

The vaccine and viral vector industry is growing at an accelerated rate. To improve harvest and purification processes, the development of continuous membrane-based operations, such as normal flow filtration (NFF) and single pass tangential flow filtration (SPTFF) for concentration were explored. This work was conducted using two model viruses, non-enveloped porcine parvovirus (PPV) and enveloped Suid herpesvirus (SuHV). The viruses are in the same family as the gene therapy vectors adeno associated virus and herpes simplex virus, respectively. SPTFF design started with batch TFF for membrane selection. Hollow fiber membranes with a 100 and 300 kDa molecular weight cut off …


Comparative Analysis Of Leaflet Materials, Stent Materials, And Stent Cell Density For Bileaflet Transcatheter Mitral Valve Design, Joseph Chibuike Nwokeafor, Joshua D. Hofmeister, Breandan B. Yeats, Lakshmi Prasad Dasi, Charanjit S. Rihal, Juan A. Crestanello, Leigh Griffiths, Mohamad A. Alkhouli, Hoda Hatoum Jun 2026

Comparative Analysis Of Leaflet Materials, Stent Materials, And Stent Cell Density For Bileaflet Transcatheter Mitral Valve Design, Joseph Chibuike Nwokeafor, Joshua D. Hofmeister, Breandan B. Yeats, Lakshmi Prasad Dasi, Charanjit S. Rihal, Juan A. Crestanello, Leigh Griffiths, Mohamad A. Alkhouli, Hoda Hatoum

Michigan Tech Publications

Background: The biomechanical performance of bileaflet transcatheter mitral valves (TMVs) depends on complex interactions between leaflet material behavior and stent design. However, the contributions of leaflet materials and constitutive models, stent materials, and stent geometry to valve function and durability remain poorly understood. Methods: A parametric finite element study was conducted using a CAD model of a bileaflet TMV subjected to physiological pressure loading. Five leaflet material models were evaluated: 3 glutaraldehyde-fixed tissues—bovine pericardium (BP; FBP1, FBP2) and porcine pericardium (PP; FPP)—and 2 unfixed tissues—bovine (UBP) and porcine pericardium (UPP). BP was modeled as a linear elastic (FBP1) and Ogden …


Electrospun Nanofiber Scaffolds For In Vitro 3d Tissue Engineering, Victoria E. Santillan, Samerender Nagam Hanumantharao, Stephanie Bule, Ronish M. Shrestha, Carter Rodzik, Alan Mendoza Estrada, Stephen L. Farias, Marina Tanasova, Smitha Rao May 2026

Electrospun Nanofiber Scaffolds For In Vitro 3d Tissue Engineering, Victoria E. Santillan, Samerender Nagam Hanumantharao, Stephanie Bule, Ronish M. Shrestha, Carter Rodzik, Alan Mendoza Estrada, Stephen L. Farias, Marina Tanasova, Smitha Rao

Michigan Tech Publications

Tissue engineering is widely used in research for investigating cellular proliferation, behavior, and responses to various stimuli. However, the predictive value of preclinical studies using cell culture plates is limited by the inability to recapitulate the complexity of the physiological microenvironment. Synthetic three-dimensional (3D) scaffolds can be engineered to mimic the complex morphology of the extracellular matrix of native tissues and can serve as physiologically relevant platforms for preclinical studies. In this study, 3D electrospun scaffolds were characterized to aid in breast cancer research. Unlike previous studies that focused primarily on scaffold fabrication or cell viability, this work systematically evaluates …


Erk Builds A Population Of Short-Lived Nascent Adhesions That Produce Persistent Edge Protrusion And Cell Migration, Andrew P. Shepherd, Keith R. Carney, Majid Rostami, Jakaria Shawon, Andrew Elliott, Shiela C. Samson, Sangyoon J. Han, Michelle C. Mendoza Apr 2026

Erk Builds A Population Of Short-Lived Nascent Adhesions That Produce Persistent Edge Protrusion And Cell Migration, Andrew P. Shepherd, Keith R. Carney, Majid Rostami, Jakaria Shawon, Andrew Elliott, Shiela C. Samson, Sangyoon J. Han, Michelle C. Mendoza

Michigan Tech Publications

Cell migration is realized through the fast and persistent protrusion of a leading edge in the direction of movement. The actin and adhesion structures that build edge protrusions are integrated such that pro-migration signaling pathways must control both assemblies to induce protrusion. Understanding the contribution of adhesion regulation has been complicated by the inability to selectively assay the nascent adhesions that promote edge protrusion. Here, we dissect how the core RAS → RAF → MEK → ERK pathway’s control of nascent adhesions contributes to edge protrusion and cell migration by targeting an ERK FRET biosensor to adhesions and quantifying ERK’s …


Using Machine Learning Algorithms To Clarify Relationships Between Soil Properties And Lead Stomach Bioaccessibility, Shehan Wijesinghe, Dibyendu Sarkar, Hadeer Saleh, Khalid Mustafa, Smitha Rao, Rupali Datta Apr 2026

Using Machine Learning Algorithms To Clarify Relationships Between Soil Properties And Lead Stomach Bioaccessibility, Shehan Wijesinghe, Dibyendu Sarkar, Hadeer Saleh, Khalid Mustafa, Smitha Rao, Rupali Datta

Michigan Tech Publications

Featured Application: This paper has important applications in environmental health risk assessment and urban soil remediation planning. By demonstrating how machine learning can predict lead bioaccessibility in lead paint-contaminated soil, the study provides a scalable, cost-effective alternative to laboratory-based extraction methods. Such models could support rapid screening of contaminated sites, helping prioritize high-risk areas for intervention and allocate remediation resources more efficiently. This model is expected to advance data-driven decision-making for managing lead-contaminated soils and protect vulnerable urban populations from exposure. Lead contamination in urban soils, primarily from deteriorating lead-based paint, poses a significant health risk in the United States. …


Etv2 Mediated Differentiation Of Human Pluripotent Stem Cells Results In Functional Endothelial Cells For Engineering Advanced Vascularized Microphysiological Models, Shun Zhang, Zhengpeng Wan, Lei Wang, Caihong Wu, Junkai Zhang, Sarah Spitz, Xun Wang, Marie A. Floryan, Mark F. Coughlin, Francesca M. Pramotton, Liling Xu, Ron Weiss, Roger D. Kamm Mar 2026

Etv2 Mediated Differentiation Of Human Pluripotent Stem Cells Results In Functional Endothelial Cells For Engineering Advanced Vascularized Microphysiological Models, Shun Zhang, Zhengpeng Wan, Lei Wang, Caihong Wu, Junkai Zhang, Sarah Spitz, Xun Wang, Marie A. Floryan, Mark F. Coughlin, Francesca M. Pramotton, Liling Xu, Ron Weiss, Roger D. Kamm

Michigan Tech Publications

Patient-specific microphysiological models have become a valuable tool for broad applications, revolutionizing biomedical research. However, limitations persist, with functional vasculature being a significant challenge. With the discovery of ETV2's determinant role in specifying EC lineages during differentiation, researchers have adopted techniques involving ETV2 overexpression to produce h-iECs more efficiently and consistently. Here, we generated multiple h-iPSC lines with inducible ETV2 expression, and subsequently differentiated them into h-iECs, which were validated functionally and by key endothelial markers and RNA-seq analysis. These cells are capable of reproducibly self-organizing into stable microvascular networks (MVNs) in a microfluidic chip, forming lumenized and functional vessels …


Electrochemical Deactivation Of High-Strength, Catechol-Based Adhesives Incorporated With Anhydrous Proton And Electron Conducting Elements, Han Peng, Zhongtian Zhang, Vedika Khare, Abhilash Arjan Das, Fatemeh Razaviamri, Kan Wang, Bruce P Lee Mar 2026

Electrochemical Deactivation Of High-Strength, Catechol-Based Adhesives Incorporated With Anhydrous Proton And Electron Conducting Elements, Han Peng, Zhongtian Zhang, Vedika Khare, Abhilash Arjan Das, Fatemeh Razaviamri, Kan Wang, Bruce P Lee

Michigan Tech Publications

Catechol offers switchable adhesion in response to electrochemical redox reaction. However, electrochemistry requires water for effective proton transport, but water weakens adhesive performance. Here, we incorporate proton and electron conducting elements (sulfonic acid-containing monomer and multiwalled carbon nanotube, respectively) into a water-free catechol-based adhesive to create a high-strength adhesive that is also susceptible to electrochemical control. These additions increase the proton and electrical conductivity by over 100-fold. The adhesive also exhibits elevated lap shear adhesion strength (4.6 MPa) to metal substrates and outperforms a commercial epoxy glue. Under mild electrical stimulation (9 V), the adhesive strength decreases by over 90%. …


Translating Graduate Level Engineering Methods For K12 Students, Ahmad Bshennaty, Joey Marano, Hoda Hatoum Mar 2026

Translating Graduate Level Engineering Methods For K12 Students, Ahmad Bshennaty, Joey Marano, Hoda Hatoum

Michigan Tech Publications

Purpose

Advanced engineering tools such as particle image velocimetry (PIV) and computational fluid dynamics (CFD) are rarely introduced in K12 education despite their relevance in modeling engineering systems. This study evaluates whether K12 students can meaningfully engage with these traditional graduate-level methods when applied to cardiovascular flows and delivered through structured modules.

Methods

A 5-day full-time summer class was designed and enrolled 13 secondary students (grades 9–11) to introduce them to 3D printing, coding, PIV, medical image segmentation, and CFD modeling. Students participated in both experimental and computational activities and completed two evaluation forms assessing learning outcomes, instructional methods, challenges, …


Investigating Confounding Factors In Shear Wave Speed Measurements Of Fibrotic Liver Tissues: A Computer Simulation Study, Emily J. Miller, Yongmei Jin, Jingfeng Jiang Mar 2026

Investigating Confounding Factors In Shear Wave Speed Measurements Of Fibrotic Liver Tissues: A Computer Simulation Study, Emily J. Miller, Yongmei Jin, Jingfeng Jiang

Michigan Tech Publications

Screening patients with liver fibrosis and identifying those at risk of developing advanced liver fibrosis is of clinical interest. Shear wave elastography (SWE), a promising non-invasive screening tool used to distinguish healthy tissue from diseased tissue, measures tissue shear wave speed (SWS) to describe tissue stiffness and identify liver fibrosis. However, considerable variations in the reported results have been found. We propose that the heterogeneity of the liver tissue background, such as the presence of fatty liver tissue and the preferred local orientation of the scarred fibrotic liver tissues embedded into the liver parenchyma, may contribute to the uncertainty in …


Mechanics Post-Tavr For Trileaflet Vs Bicuspid Aortic Valves: Insights From Computational Simulation, Breandan B. Yeats, Aniket Venkatesh, Sri Krishna Sivakumar, Hoda Hatoum, Milad Samaee, Venkateshwar Polsani, Et. Al. Dec 2025

Mechanics Post-Tavr For Trileaflet Vs Bicuspid Aortic Valves: Insights From Computational Simulation, Breandan B. Yeats, Aniket Venkatesh, Sri Krishna Sivakumar, Hoda Hatoum, Milad Samaee, Venkateshwar Polsani, Et. Al.

Michigan Tech Publications

Background: Bicuspid aortic valve (BAV) disease is the most common congenital heart defect and is associated with elliptical openings and excess calcification. Limited data are available on long-term efficacy of transcatheter aortic valve replacement (TAVR) for BAV patients.

Objectives: The purpose of this study was to compare simulated mechanical metrics post-TAVR between BAV and trileaflet patients with calcific aortic stenosis.

Methods: Pre-TAVR computed tomography scans of trileaflet (n = 22) and BAV (n = 25) were used to segment the aortic valve. Simulated balloon-expandable stent deployment was performed from a previously developed protocol. The bioprosthetic leaflets were then pressurized under …


Progressive Insights Into 3d Bioprinting For Corneal Tissue Restoration, Ilayda Namli, Deepak Gupta, Yogendra Pratap Singh, Pallab Datta, Muhammad Rizwan, Mehmet Baykara, Ibrahim T. Ozbolat Sep 2025

Progressive Insights Into 3d Bioprinting For Corneal Tissue Restoration, Ilayda Namli, Deepak Gupta, Yogendra Pratap Singh, Pallab Datta, Muhammad Rizwan, Mehmet Baykara, Ibrahim T. Ozbolat

Michigan Tech Publications

The complex architecture of the cornea, characterized by specifically organized collagen fibrils and distinct cellular layers, poses significant challenges for traditional tissue engineering strategies to replicate its native function. 3D Bioprinting offers a promising solution by enabling the precise, layer-by-layer fabrication of corneal tissues, closely mimicking the essential characteristics needed for vision restoration and long-term graft success. This Review critically examines the key biomechanical, optical, and structural attributes of the cornea necessary for its effective engineering and accurate 3D bioprinting. It provides a comprehensive overview of different 3D bioprinting modalities utilized for corneal tissue engineering and offers insights into potential …


Comprehensive Review Of In Vitro Approaches For Environmental Heavy Metal Exposure, Manas Warke, Madeline English, Camila Padilla, Lexie Gasco, Wendy Leisner, Rupali Datta, Smitha Rao Sep 2025

Comprehensive Review Of In Vitro Approaches For Environmental Heavy Metal Exposure, Manas Warke, Madeline English, Camila Padilla, Lexie Gasco, Wendy Leisner, Rupali Datta, Smitha Rao

Michigan Tech Publications

Heavy metals are ubiquitous environmental pollutants, contaminating air, soil, and water via the erosion of natural deposits, as well as originating from anthropogenic sources, such as agriculture, industries, transportation, and landfills. The increasing utilization of heavy metals over the years, combined with the persistent nature of metals in the environment poses a direct threat to human and environment health. Although regulatory limits have been established for toxic metals, assessing the associated health risks using real-life exposure scenarios remains challenging. In this review, we summarize the development and use of in vitro models based two- and three-dimensional cell culture systems, focusing …


Correlations Between Hemodynamics And Radiomic Features In Thrombosed Intracranial Aneurysms, Zonghan Lyu, Andres Gudino, Navami Shenoy, Carlos Dier, Elena Sagues, Jingfeng Jiang, Edgar A. Samaniego Aug 2025

Correlations Between Hemodynamics And Radiomic Features In Thrombosed Intracranial Aneurysms, Zonghan Lyu, Andres Gudino, Navami Shenoy, Carlos Dier, Elena Sagues, Jingfeng Jiang, Edgar A. Samaniego

Michigan Tech Publications

Purpose: Evaluating intracranial aneurysm (IA) rupture risk is essential for guiding management. Although intrasaccular thrombosis (IST) is less common, it can contribute to aneurysm growth, mass effect, and rupture. Aneurysm wall enhancement (AWE) on high-resolution MRI (HR-MRI) offers valuable insight into IST and IA progression. Using radiomics, we extracted spatial information of the aneurysm wall to characterize AWE. This study aimed to explore correlations between radiomics-based AWE profiles and gross hemodynamic parameters, integrating imaging and flow dynamics to better understand IST. Methods: Radiomic analysis was conducted on a cohort of 3T HR-MRI scans from IA with IST. Three-dimensional vascular reconstructions …


Challenges And Artificial Intelligence Solutions For Clinically Optimal Hepatic Venous Vessel Segmentation, Håvard Bjørke Jenssen, Varatharajan Nainamalai, Egidijus Pelanis, Rahul P. Kumar, Andreas Abildgaard, Finn Kristian Kolrud, Bjørn Edwin, Jingfeng Jiang, Joseph Vettukattil, Ole Jakob Elle, Smund Avdem Fretland Aug 2025

Challenges And Artificial Intelligence Solutions For Clinically Optimal Hepatic Venous Vessel Segmentation, Håvard Bjørke Jenssen, Varatharajan Nainamalai, Egidijus Pelanis, Rahul P. Kumar, Andreas Abildgaard, Finn Kristian Kolrud, Bjørn Edwin, Jingfeng Jiang, Joseph Vettukattil, Ole Jakob Elle, Smund Avdem Fretland

Michigan Tech Publications

Background:: Liver vessel identification is crucial for clinical disease assessment and treatment planning, especially concerning local treatment of liver tumors. As artificial intelligence (AI) develops in radiology, opportunities arise to craft models adept at hepatic venous vessel segmentation, opening possibilities for creating patient-specific models of the liver anatomy quickly, despite the diverse features of CT images encountered in clinical settings. Objective: This research evaluates the performance of AI models combined with various pre-processing filters for liver vessel segmentation, emphasizing clinically relevant results. A novel evaluation method was introduced to offer more anatomically accurate assessments, moving beyond traditional metrics like the …


A Longitudinal Analysis Of Morphological Shape Variation Of Spleen In Patients With Fontan Surgery, Varatharajan Nainamalai, Håvard Bjørke Jenssen, Mostafa Rezaeitaleshmahalleh, Djinaud Prophete, Jordan Gosnell, Sarah Khan, Marcus Haw, Jingfeng Jiang, Joseph Vettukattil Jul 2025

A Longitudinal Analysis Of Morphological Shape Variation Of Spleen In Patients With Fontan Surgery, Varatharajan Nainamalai, Håvard Bjørke Jenssen, Mostafa Rezaeitaleshmahalleh, Djinaud Prophete, Jordan Gosnell, Sarah Khan, Marcus Haw, Jingfeng Jiang, Joseph Vettukattil

Michigan Tech Publications

Background: Splenic size serves as a surrogate biomarker for predicting portal vein hyper-tension and liver abnormalities in subjects with Fontan Associated Liver Disease (FALD). We analyze the long-term shape variation of the spleen in FALD subjects using morphological shape features of radiomic features. Methods: We used 154 (84 from computed tomography and 70 from magnetic resonance) image volumes obtained from 36 individuals who underwent stage 3 Fontan procedure and 145 computed tomography images from controls to assess splenomegaly. To understand the splenomegaly, thirteen shape features of the spleen over three 10-year intervals, and variations between controls and FALD subjects were …


Direct Arp2/3-Vinculin Binding Is Required For Pseudopod Extension, But Only On Compliant Substrates And In 3d, Tadamoto Isogai, Kevin M. Dean, Philippe Roudot, Evgenia V. Azarova, Kushal Bhatt, Meghan K. Driscoll, Shaina P. Royer, Nikhil Mittal, Bo Jui Chang, Sangyoon J. Han, Reto Fiolka, Gaudenz Danuser Jun 2025

Direct Arp2/3-Vinculin Binding Is Required For Pseudopod Extension, But Only On Compliant Substrates And In 3d, Tadamoto Isogai, Kevin M. Dean, Philippe Roudot, Evgenia V. Azarova, Kushal Bhatt, Meghan K. Driscoll, Shaina P. Royer, Nikhil Mittal, Bo Jui Chang, Sangyoon J. Han, Reto Fiolka, Gaudenz Danuser

Michigan Tech Publications

A critical step in cell morphogenesis is the extension of actin-dense pseudopods, controlled by actin-binding proteins (ABPs). While this process is well-understood on glass coverslips, it is less so in compliant three-dimensional environments. Here, we knocked out a series of ABPs in osteosarcoma cells and evaluated their effect on pseudopod extension on glass surfaces (2D) and in collagen gels (3D). Cells lacking the longest Arp3 gene variant, or with attenuated Arp2/3 activity, had the strongest reduction in pseudopod formation between 2D and 3D. This was largely due to reduced activity of the hybrid Arp2/3-vinculin complex, which was dispensable on glass. …


A Joint Geometric Topological Analysis Network (Jgta-Net) For Detecting And Segmenting Intracranial Aneurysms, Xinyue Zhang, Zonghan Lyu, Yang Wang, Bo Peng, Jingfeng Jiang May 2025

A Joint Geometric Topological Analysis Network (Jgta-Net) For Detecting And Segmenting Intracranial Aneurysms, Xinyue Zhang, Zonghan Lyu, Yang Wang, Bo Peng, Jingfeng Jiang

Michigan Tech Publications

Objective: The rupture of intracranial aneurysms leads to subarachnoid hemorrhage. Detecting intracranial aneurysms before rupture and stratifying their risk is critical in guiding preventive measures. Point-based aneurysm segmentation provides a plausible pathway for automatic aneurysm detection. However, challenges in existing segmentation methods motivate the proposed work. Methods: We propose a dual-branch network model (JGTANet) for accurately detecting aneurysms. JGTA-Net employs a hierarchical geometric feature learning framework to extract local contextual geometric information from the point cloud representing intracranial vessels. Building on this, we integrated a topological analysis module that leverages persistent homology to capture complex structural details of 3D objects, …


Engineering The Immune Response To Biomaterials, Abolfazl Salehi Moghaddam, Mehran Bahrami, Einollah Sarikhani, Rumeysa Tutar, Yavuz Nuri Ertas, Faleh Tamimi, Ali Hedayatnia, Clotilde Jugie, Houman Savoji, Asma Talib Qureshi, Muhammad Rizwan, Chima V. Maduka, Nureddin Ashammakhi May 2025

Engineering The Immune Response To Biomaterials, Abolfazl Salehi Moghaddam, Mehran Bahrami, Einollah Sarikhani, Rumeysa Tutar, Yavuz Nuri Ertas, Faleh Tamimi, Ali Hedayatnia, Clotilde Jugie, Houman Savoji, Asma Talib Qureshi, Muhammad Rizwan, Chima V. Maduka, Nureddin Ashammakhi

Michigan Tech Publications

Biomaterials are increasingly used as implants in the body, but they often elicit tissue reactions due to the immune system recognizing them as foreign bodies. These reactions typically involve the activation of innate immunity and the initiation of an inflammatory response, which can persist as chronic inflammation, causing implant failure. To reduce these risks, various strategies have been developed to modify the material composition, surface characteristics, or mechanical properties of biomaterials. Moreover, bioactive materials have emerged as a new class of biomaterials that can induce desirable tissue responses and form a strong bond between the implant and the host tissue. …


Investigating The Role Of Blood Models In Predicting Rupture Status Of Intracranial Aneurysms, Zonghan Lyu, Mostafa Rezaeitaleshmahalleh, Nan Mu, Jingfeng Jiang Apr 2025

Investigating The Role Of Blood Models In Predicting Rupture Status Of Intracranial Aneurysms, Zonghan Lyu, Mostafa Rezaeitaleshmahalleh, Nan Mu, Jingfeng Jiang

Michigan Tech Publications

Purpose. Selecting patients with high-risk intracranial aneurysms (IAs) is of clinical importance. Recent work in machine learning-based (ML) predictive modeling has demonstrated that lesion-specific hemodynamics within IAs can be combined with other information to provide critical insights for assessing rupture risk. However, how the adoption of blood rheology models (i.e., Newtonian and Non-Newtonian blood models) may influence ML-based predictive modeling of IA rupture risk has not been investigated.Methods and Materials.In this study, we conducted transient CFD simulations using Newtonian and non-Newtonian rheology (Carreau-Yasuda [CY]) models on a large cohort of 'patient-specific' IA geometries (>100) under pulsatile flow conditions to …


Imine Crosslinked, Injectable, And Self-Healing Fucoidan Hydrogel With Immunomodulatory Properties, Asma Talib Qureshi, Shajia Afrin, Saad Asim, Muhammad Rizwan Apr 2025

Imine Crosslinked, Injectable, And Self-Healing Fucoidan Hydrogel With Immunomodulatory Properties, Asma Talib Qureshi, Shajia Afrin, Saad Asim, Muhammad Rizwan

Michigan Tech Publications

Biomaterials with inherent anti-inflammatory properties and the ability to foster a pro-regenerative environment hold significant promise for enhancing cell transplantation and tissue regeneration. Fucoidan, a sulfated polysaccharide with well-documented immune-regulatory and antioxidant capabilities, offers strong potential for creating such biomaterials. Yet, there is a lack of engineered fucoidan hydrogels that are injectable and provide tunable physicochemical properties. In this study, the ability of fucoidan to undergo periodate-mediated oxidation is leveraged to introduce aldehydes into backbone (oxidized fucoidan, OFu), enabling the formation of reversible, imine-crosslinks with amine-containing molecules such as gelatin. The imine-crosslinked OFu-gelatin hydrogel provided excellent control over gelation rate …


The Artificial Intelligence-Enhanced Echocardiographic Detection Of Congenital Heart Defects In The Fetus: A Mini-Review, Khadiza Tun Suha, Hugh Lubenow, Stefania Soria-Zurita, Marcus Haw, Joseph Vettukattil, Jingfeng Jiang Mar 2025

The Artificial Intelligence-Enhanced Echocardiographic Detection Of Congenital Heart Defects In The Fetus: A Mini-Review, Khadiza Tun Suha, Hugh Lubenow, Stefania Soria-Zurita, Marcus Haw, Joseph Vettukattil, Jingfeng Jiang

Michigan Tech Publications

Artificial intelligence (AI) is rapidly gaining attention in radiology and cardiology for accurately diagnosing structural heart disease. In this review paper, we first outline the technical background of AI and echocardiography and then present an array of clinical applications, including image quality control, cardiac function measurements, defect detection, and classifications. Collectively, we answer how integrating AI technologies and echocardiography can help improve the detection of congenital heart defects. Particularly, the superior sensitivity of AI-based congenital heart defect (CHD) detection in the fetus (>90%) allows it to be potentially translated into the clinical workflow as an effective screening tool in …


Trpv4 Dominates High Shear-Induced Initial Traction Response And Long-Term Relaxation Over Piezo1, Mohanish Chandurkar, Manli Yang, Majid Rostami, Sangyoon J. Han Feb 2025

Trpv4 Dominates High Shear-Induced Initial Traction Response And Long-Term Relaxation Over Piezo1, Mohanish Chandurkar, Manli Yang, Majid Rostami, Sangyoon J. Han

Michigan Tech Publications

Modulation of endothelial traction is critical for the responses of endothelial cells to fluid shear stress (FSS), which has profound implications for vascular health and atherosclerosis. Previously, we demonstrated that under high FSS, endothelial cells rapidly increase traction forces, followed by relaxation, with traction aligning in the flow direction. In contrast, low shear preconditioning induces a modest short-term increase in traction (min), followed by a secondary long-term (>14 hr) rise, with traction/cells aligning perpendicular to the flow. The upstream mechanosensors driving these responses, however, remain unknown. Here, we sought the roles of Piezo1 and TRPV4 ion channels in shear-induced …


Calcium Phosphate Formation And Deposition In Ischemic Neurons, Shu Q. Liu, John B. Troy, Jeremy Goldman, Roger J. Guillory Jan 2025

Calcium Phosphate Formation And Deposition In Ischemic Neurons, Shu Q. Liu, John B. Troy, Jeremy Goldman, Roger J. Guillory

Michigan Tech Publications

Ischemic stroke causes acute brain calcium phosphate (CaP) deposition, a process involving primarily the injured neurons. Whereas the adverse impact of CaP deposition on the brain structure and function has been recognized, the underlying mechanisms remain poorly understood. This investigation demonstrated that the neuron-expressed, plasma membrane-associated Ca2+-binding proteins annexin (Anx) A2, AnxA5, AnxA6, and AnxA7 contributed to neuronal CaP deposition in the mouse model of ischemic stroke. These Anxs were released from the degraded plasma membrane of the ischemic neurons and were able to form Anx/CaP complexes, a nanostructure capable of binding to the β actin filaments via Anx–actin interaction …


Improving Rupture Status Prediction For Intracranial Aneurysms Using Wall Shear Stress Informatics, Jingfeng Jiang, Mostafa Rezaeitaleshmahalleh, Jinshan Tang, Joseph Gemmette, Aditya Pandey Jan 2025

Improving Rupture Status Prediction For Intracranial Aneurysms Using Wall Shear Stress Informatics, Jingfeng Jiang, Mostafa Rezaeitaleshmahalleh, Jinshan Tang, Joseph Gemmette, Aditya Pandey

Michigan Tech Publications

BACKGROUND: Wall shear stress (WSS) plays a crucial role in the natural history of intracranial aneurysms (IA). However, spatial variations among WSS have rarely been utilized to correlate with IAs' natural history. This study aims to establish the feasibility of using spatial patterns of WSS data to predict IAs' rupture status (i.e., ruptured versus unruptured). METHODS: "Patient-specific" computational fluid dynamics (CFD) simulations were performed for 112 IAs; each IA's rupture status was known from medical records. Recall that CFD-simulated hemodynamics data (wall shear stress and its derivatives) are located on unstructured meshes. Hence, we mapped WSS data from an unstructured …


Semi-Quantitative Elemental Imaging Of Corrosion Products From Bioabsorbable Mg Vascular Implants In Vivo, Weilue He, Keith W. Macrenaris, Adam Griebel, Maria P. Kwesiga, Erico Freitas, Amani Gillette, Jeremy Schaffer, Thomas V. O'Halloran, Roger J. Guillory Ii Jan 2025

Semi-Quantitative Elemental Imaging Of Corrosion Products From Bioabsorbable Mg Vascular Implants In Vivo, Weilue He, Keith W. Macrenaris, Adam Griebel, Maria P. Kwesiga, Erico Freitas, Amani Gillette, Jeremy Schaffer, Thomas V. O'Halloran, Roger J. Guillory Ii

Michigan Tech Publications

While metal materials historically have served as permanent implants and were designed to avoid degradation, next generation bioabsorbable metals for medical devices such as vascular stents are under development, which would elute metal ions and corrosion byproducts into tissues. The fate of these eluted products and their local distribution in vascular tissue largely under studied. In this study, we employ a high spatial resolution spectrometric imaging modality, laser ablation inductively coupled plasma time-of-flight mass spectrometry (LA-ICP-TOF-MS) to map the metal distribution, (herein refered to as laser ablation mapping, or LAM) from Mg alloys within the mouse vascular system and approximate …


Developing A Nearly Automated Open-Source Pipeline For Conducting Computational Fluid Dynamics Simulations In Anterior Brain Vasculature: A Feasibility Study, Mostafa Rezaeitaleshmahalleh, Nan Mu, Zonghan Lyu, Joseph Gemmete, Aditya Pandey, Jingfeng Jiang Dec 2024

Developing A Nearly Automated Open-Source Pipeline For Conducting Computational Fluid Dynamics Simulations In Anterior Brain Vasculature: A Feasibility Study, Mostafa Rezaeitaleshmahalleh, Nan Mu, Zonghan Lyu, Joseph Gemmete, Aditya Pandey, Jingfeng Jiang

Michigan Tech Publications

Intracranial aneurysms (IA) pose significant health risks and are often challenging to manage. Computational fluid dynamics (CFD) simulation has emerged as a powerful tool for understanding lesion-specific hemodynamics in and around IAs, aiding in the clinical management of patients with an IA. However, the current workflow of CFD simulations is time-consuming, complex, and labor-intensive and, thus, does not fit the clinical environment. To address these challenges, we have developed a semi-automated pipeline integrating multiple open-source software packages to streamline the CFD simulation process. Specifically, the study utilized medical angiography data from 18 patients. An in-house open-source DL image segmentation model …


Ptsd Increases Risk For Hypertension Development Through Pvn Activation And Vascular Dysfunction In Sprague Dawley Rats, Xinqian Chen, Xin Yan, Chunxiu Yu, Qing-Hui Chen, Lanrong Bi, Zhiying Shan Nov 2024

Ptsd Increases Risk For Hypertension Development Through Pvn Activation And Vascular Dysfunction In Sprague Dawley Rats, Xinqian Chen, Xin Yan, Chunxiu Yu, Qing-Hui Chen, Lanrong Bi, Zhiying Shan

Michigan Tech Publications

This study investigates the impact of single prolonged stress (SPS), a model of post-traumatic stress disorder (PTSD), on cardiovascular responses, hypothalamic paraventricular nucleus (PVN) activity, and vascular function to elucidate the mechanisms linking traumatic stress to hypertension. Although SPS did not directly cause chronic hypertension in male Sprague Dawley (SD) rats, it induced acute but transient increases in blood pressure and heart rate and significantly altered the expression of hypertension-associated genes, such as vasopressin, angiotensin II type 1 receptor (AT1R), and FOSL1 in the PVN. Notably, mitochondrial reactive oxygen species (mtROS) were predominantly elevated in the pre-autonomic regions of the …


Multi-Modal Investigation Of The Bone Micro- And Ultrastructure, And Elemental Distribution In The Presence Of Mg-Xgd Screws At Mid-Term Healing Stages, Kamila Iskhakova, Hanna Cwieka, Svenja Meers, Heike Helmholz, Anton Davydok, Malte Storm, Ivo Matteo Baltruschat, Silvia Galli, Daniel Pröfrock, Olga Will, Mirko Gerle, Timo Damm, Sandra Sefa, Weilue He, Keith Macrenaris, Malte Soujon, Felix Beckmann, Julian Moosmann, Thomas O'Hallaran, Roger J. Guillory, D. C.Florian Wieland, Berit Zeller-Plumhoff, Regine Willumeit-Römer Nov 2024

Multi-Modal Investigation Of The Bone Micro- And Ultrastructure, And Elemental Distribution In The Presence Of Mg-Xgd Screws At Mid-Term Healing Stages, Kamila Iskhakova, Hanna Cwieka, Svenja Meers, Heike Helmholz, Anton Davydok, Malte Storm, Ivo Matteo Baltruschat, Silvia Galli, Daniel Pröfrock, Olga Will, Mirko Gerle, Timo Damm, Sandra Sefa, Weilue He, Keith Macrenaris, Malte Soujon, Felix Beckmann, Julian Moosmann, Thomas O'Hallaran, Roger J. Guillory, D. C.Florian Wieland, Berit Zeller-Plumhoff, Regine Willumeit-Römer

Michigan Tech Publications

Magnesium (Mg) – based alloys are becoming attractive materials for medical applications as temporary bone implants for support of fracture healing, e.g. as a suture anchor. Due to their mechanical properties and biocompatibility, they may replace titanium or stainless-steel implants, commonly used in orthopedic field. Nevertheless, patient safety has to be assured by finding a long-term balance between metal degradation, osseointegration, bone ultrastructure adaptation and element distribution in organs. In order to determine the implant behavior and its influence on bone and tissues, we investigated two Mg alloys with gadolinium contents of 5 and 10 wt percent in comparison to …


Flow Dynamic Factors Correlated With Device-Related Thrombosis After Left Atrial Appendage Occlusion, Brennan Vogl, Emily Vitale, Sunyoung Ahn, Agata Sularz, Alejandra Chavez Ponce, Gerardo V. Lo Russo, Jeremy Collins, Alessandra Maria Bavo, Ahmed El Shaer, Anders Kramer, Yuheng Jia, Davorka Lulic, Matthieu De Beule, Jens Erik Nielsen-Kudsk, Ole De Backer, Mohamad Alkhouli, Hoda Hatoum Nov 2024

Flow Dynamic Factors Correlated With Device-Related Thrombosis After Left Atrial Appendage Occlusion, Brennan Vogl, Emily Vitale, Sunyoung Ahn, Agata Sularz, Alejandra Chavez Ponce, Gerardo V. Lo Russo, Jeremy Collins, Alessandra Maria Bavo, Ahmed El Shaer, Anders Kramer, Yuheng Jia, Davorka Lulic, Matthieu De Beule, Jens Erik Nielsen-Kudsk, Ole De Backer, Mohamad Alkhouli, Hoda Hatoum

Michigan Tech Publications

Background: Device-related thrombosis (DRT) occurs in up to 4% of patients undergoing left atrial appendage occlusion (LAAO) and is associated with substantial morbidity and mortality. However, its pathophysiology, predictors, and optimal management remain unclear. Objectives: This study aims to assess flow dynamic factors correlating to DRT. Methods: A multicenter registry of patients who underwent LAAO and had pre- and post-computed tomography imaging was used. Patient-specific 3-dimensional digital models of the left atrium were created, and finite element simulations were performed to implant an LAAO device into each model in a position that matched the clinical deployment. Computational fluid dynamic simulations …