Biomedical Engineering and Bioengineering Commons^™

Design, Fabrication, And Testing Of A Pdms-Based Nanochannel Using Nano Embossing, Cooper James Haskamp

Graduate Theses and Dissertations

DNA sequencing has become increasingly important in the field of biomedical research and clinical applications. Currently, the most well-established sequencing technique is ‘Sequencing by Synthesis’ with accuracy in the range of 99.2% to 99.74% and sequencing lengths of only 300 base pairs. Sequencing by Synthesis is a lab-based method that requires expensive equipment and fast parallel computing. It is not suitable for portable, on-site applications. A new technique known as ‘nanopore’ was developed to meet these requirements. Nanopore is an electrical sequencing method that relies on the translocation of a DNA molecule through a nanoscale pore, where the blockage current …

Equipping Biomedical Engineering Students With Clinical Needs Identification Skills: Insights From A Clinical Immersion Course, Lauren E. Edmunds

Biomedical Engineering Undergraduate Honors Theses

A major goal of biomedical engineering is the development of novel and innovative medical technology that advances and improves healthcare outcomes. An essential component of medical device design is identifying the clinical needs of patients and healthcare providers and applying engineering solutions to meet these needs. Our biomedical engineering department has developed a clinical and industry immersion course, which exposes students to the environment in which physicians and patients practice and engages students in this needs identification process. This study evaluates the impact of clinical immersion on undergraduate biomedical engineering students' confidence and perceived ability to identify and define unmet …

Strengthening Kidney Dialysis One Membrane At A Time: Enhancing Tempo-Oxidized Nanocellulose And Ionic Liquid Membrane Strength Through The Variation Of Cosolvents, Bailey M. Butler

Chemical Engineering Undergraduate Honors Theses

Chronic kidney disease occurs when the kidneys lose the ability to effectively filter the blood, which causes waste build up. End-stage kidney disease (ESKD) is the most severe case of kidney disease and requires either dialysis or a kidney transplant. Hemodialysis, the most common form of dialysis, is an extremely time-intensive and physically burdensome process that is currently limited by membrane performance. The polysulfone (PSf) membranes that are widely used for dialysis today have many limitations, including fouling, toxin rejection, and essential protein loss. Recently, new membranes made from TEMPO-Oxidized nanocellulose dissolved in 1-ethyl-3-methylimidazolium acetate (EMIM-Ac) have shown promising characteristics, …

Developing Warning Signage For Harmful Algal Blooms At Lake Fayetteville, Abigail R. Evans

Biological Sciences Undergraduate Honors Theses

The presence of harmful algal blooms (HABs) poses many risk factors for human health, and once microcystin concentration has reached a certain level, that water source will be closed for the duration of the bloom. Agencies tend to use static signage with limited information to inform the public about the current status of the water, but a sign similar to the one used by the National Fire Danger Rating System can allow for constant updates detailing specific risk levels for the public. Using previously reported data on Lake Fayetteville, thresholds for risk factors that are easily measurable were determined. The …

Monitoring Streambank Morphology Using Iphone Lidar Technology, Lily C. Stitt

Biological and Agricultural Engineering Undergraduate Honors Theses

Monitoring stream morphology is crucial for maintaining the health and safety of fluvial environments, particularly as these naturally dynamic systems are shifted out of equilibrium due to climate and land-use change. Quantifying changes in stream geometry are useful for infrastructure design, water quality assessment, water resource management, and stream restoration, among other applications. Traditional stream surveying methods contain numerous cost limitations that inhibit affordable and accessible stream surveying needed for evaluating stream geometry with high accuracy and larger spatial scales (>100s of ). In recent years, several advancements have been made in the use of Light Detection and Ranging …

An Experimental Study Of The Morphology Of Dna-Carbon Nanotube Hybrid Structures In Direct Dna Sequencing, Avery P. Davis

Biomedical Engineering Undergraduate Honors Theses

Hybrid structures formed between single-stranded DNA (ssDNA) and single-walled carbon nanotubes (SWCNT) have emerged as promising components in future direct DNA sequencing technologies due to their unique morphological and electronic properties. The nanoscale configuration of these hybrids, including the DNA wrapping angle, pitch, and contour behavior, directly influences their potential for stable electronic readout. This thesis presents an experimental study of DNA-SWCNT hybrid morphology using a fixed, reproducible wrapping protocol designed to minimize environmental variability and isolate the influence of DNA nucleotide sequence on hybrid structure. As described in prior work, this protocol produces well-dispersed hybrids suitable for high-resolution imaging. …

Retrospective Analysis Of Implemented Project Management Within A Small-Scale Student Engineering Project: Beng Fountain Wars Team Case Study, Holli E. Jenkins

Biological and Agricultural Engineering Undergraduate Honors Theses

This honors thesis provides a retrospective analysis of how the 2025 inaugural University of Arkansas’s ASABE Fountain Wars Student Team could be improved through project management. Project commitment, early stakeholder influence, rich communication, and a detailed project plan are all attributes of successful projects, and the team’s strengths and weaknesses within these categories were determined through a team poll. After the poll was conducted, three methodologies, Agile, Hybrid, and Waterfall, were assessed to determine how they would effectively address the team’s weaknesses. A weighted objectives table was created to compare each methodology’s effectiveness across the management categories. The analysis revealed …

Development And Characteristics Of A Dual-Layered Vascular Phantom, Kaitlyn M. Elmer, Cassidy Caffin, Breeanna Scott, Sam E. Stephens, Morten Jensen

Biomedical Engineering Faculty Publications and Presentations

Purpose Cardiovascular phantoms are used in biomedical research and development applications, allowing for complex geometries to be studied in a controlled environment. The various layers of human tissue have been difficult to mimic in these phantoms. In this study, a novel dual-layer cardiovascular phantom is created. Methods The interior lumen is 3D printed using an elastic vat-photopolymerization resin and cast within an industry standard tissue-mimicking ballistics gel. Strips of the 3D-printed resin were prepared and tested to determine Young's modulus, Ultimate tensile strength, and elongation at break. Results The final phantoms were reproducible, semi-transparent, and suitable for microCT scanning. Additionally, …

Systemic Drug Delivery In Pigs Using Biodegradable Microneedle Patches, Katherine A. Miranda-Munoz, Tsungcheng Tsai, Jacy Riddle, Ke He, Lee Blaney, Jeremy Powell, Jorge Almodovar

Biomedical Engineering Faculty Publications and Presentations

Transdermal microneedle systems offer a minimally invasive strategy for systemic drug delivery in veterinary medicine. In this study, biodegradable microneedle patches composed of polyvinyl alcohol, collagen, and chitosan were evaluated in pigs for the delivery of two model compounds, fluorescein isothiocyanate-dextran (FITC-dextran, 4 kDa) and flunixin meglumine (FLU). Patches were applied to the ear and neck to assess the influence of anatomical site on systemic absorption. FITC-dextran delivered via a single 50 mg patch on the neck achieved approximately 1.2-1.4-fold higher plasma concentrations than oral administration and ear-applied patches, demonstrating enhanced uptake from vascularized regions. FLU patches applied to the …

Monitoring Eye Movements To Assess The Impact Of Sensory Feedback On Cognitive Workload During Myoelectric Prosthetic Hand Use, Naomi Tchoungang, Hailey Dirrigl, Justin Asbee

2026 Research Poster Competition

Modern prosthetic hands allow users to grasp and manipulate objects, but many users must constantly watch the device to complete even simple tasks. This heavy reliance on vision increases cognitive effort, slows movement, and makes prosthetic use feel less natural. An important question in prosthetics research is whether providing sensory feedback (enabling users to feel what the prosthetic hand is doing) can reduce this cognitive load and improve performance. In this study, sensory feedback refers to a system that provides clear tactile cues to the user upon contact between the prosthetic hand and an object, helping replace information normally felt …

Assessing Mesenchymal Stem Cell Phenotype After Heparan Sulfate Supplementation, Isani Patel

2026 Research Poster Competition

Multiple sclerosis is an autoimmune disease that damages the protective coating of nerves, often causing lasting neurological symptoms. Current treatments slow disease activity but rarely repair existing damage. In response to this, a novel treatment option has emerged: mesenchymal stem cell (MSC) therapy. MSCs are cells found in different adult tissues like bone marrow, and they have the potential to release repair-supporting signals and moderate inflammation. Nevertheless, results in a clinical setting have been inconsistent due to variations in cell potency. As a potential strategy to enhance MSC therapeutic potential, the addition of heparan sulfate, a naturally occurring signaling molecule, …

Cardiovascular Monitoring For Maternal Health Using Wearable Devices, Daniela Alejandra Vasquez

2026 Research Poster Competition

Cardiovascular disease represents the leading cause of pregnancy-related mortality in the United States, accounting for over 30% of maternal deaths, with preeclampsia and hypertensive disorders contributing significantly to this burden. In Arkansas, maternal mortality rates reach 41.9 deaths per 100,000 live births. Current prenatal care relies on intermittent office-based blood pressure measurements conducted during 12-14 clinical visits, may not capture critical cardiovascular changes in a timely manner. Preeclampsia is characterized by new-onset hypertension after 20 weeks of gestation, affects 3-7% of pregnancies, and requires early detection to enable timely intervention. The limited accessibility of ambulatory blood pressure monitoring in rural …

Uav-Based Sensor Integration For In-Situ Lake Water Quality Monitoring, Alec Campbell

2026 Research Poster Competition

Current water quality assessment methods rely heavily on manual sampling and laboratory analysis, which are time-consuming and difficult to perform in remote or hazardous environments. In surface water monitoring, spatial and temporal resolution is often constrained by labor, access, and logistical limitations of manual sampling programs. This research aims to develop a drone-based system for real-time, in situ lake water quality monitoring. To address these challenges, the project focuses on integrating multiple water quality sensors, including oxidation-reduction potential (ORP), pH, electrical conductivity (EC), turbidity, and a multispectral spectrometer, into a compact, UAV-compatible design capable of collecting spatially referenced data. Methods: …

Enhancing Prosthetic Hand Training Through A Virtual Reality–Based Framework Integrated With The Coapt Control System., Iruoghene Ojoh

2026 Research Poster Competition

Enhancing Prosthetic Hand Training Through a Virtual Reality–Based Framework  Integrated with the Coapt Control System. Ojoh, I.1,2, Shell, A.1,  Asbee, J.1, Aguilar, D.1 ,Abbas, J.1,2,   1Institute for Integrative and Innovative Research, University of Arkansas, Fayetteville, AR;  2Department of Biomedical Engineering, University of Arkansas, Fayetteville, AR  Introduction: Advances in upper-limb prosthetic hardware have greatly improved strength, durability, and mechanical performance; however, achieving intuitive control of EMG-based myoelectric prosthetic hands remains a significant challenge for individuals with trans-radial amputations. These devices rely on electromyography (EMG) signals generated by residual forearm muscles, which require consistent and well-coordinated muscle activation. Many users experience difficulty …

Testing The Effects Of Mechanical Stimulation On Mesenchymal Stem Cell Cultures, Ella Collis

2026 Research Poster Competition

Mesenchymal stem cells (MSCs) are a promising treatment option for a variety of diseases due to their ability to migrate to far-off sites, modulate inflammatory immune responses, secrete factors that aid in tissue healing, and their capacity to become several cell types. These cells can be found and isolated from various body tissues including bone marrow and adipose tissue, even so the number of cells obtained from these tissues is minimal compared to the amounts needed for their transplantation in cell therapy treatments. Therefore, their culture in plastic dishes is required to increase the number of cells and obtain the …

Monitoring Streambank Morphology Using Iphone Lidar Technology, Lily C. Stitt

2026 Research Poster Competition

Monitoring stream morphology is crucial for maintaining the health and safety of fluvial environments, particularly as these naturally dynamic systems are shifted out of equilibrium due to climate and land-use change. Quantifying these changes in stream geometry is useful for infrastructure design, water quality assessment, water resource management, and stream restoration, among other applications. Traditional stream surveying methods contain limitations that inhibit affordable and accessible stream surveying needed for evaluating fluvial systems with high accuracy and large data samples. In recent years, several advancements have been made in the use of Light Detection and Ranging (LiDAR) technology as an alternative …

Developing A Cpp-Conjugated Cas9 Library For Efficient Non-Viral Delivery To The Dmd Gene, Amie Donathan

2026 Research Poster Competition

Duchenne muscular dystrophy, or DMD, is a genetic neuromuscular disorder caused by the mutation of the DMD gene, resulting in alterations in the functionality or production of dystrophin, a protein essential to maintain muscle fiber integrity and strength. This mutation leads to progressive muscle degeneration, causing motor loss, cardiopulmonary failure, and ultimately, premature death. Gene therapies using CRISPR aim to replace the mutated gene to provide long-term correction. Although this has promise, CRISPR-based therapies use a viral vector to deliver, which presents notable challenges, such as immune problems and liver toxicity. A non-viral delivery method is a viable approach, but …

The Effects Of Membrane Structure And Filtration Conditions On Virus Filtration, Wenbo Xu, Xianghong Qian, Hironobu Shirataki, Daniel Strauss, Sumith R. Wickramasinghe

Biomedical Engineering Faculty Publications and Presentations

Virus filtration is used for validation of virus clearance in the manufacture of monoclonal antibodies. Requirements for this size exclusion process include 10,000-fold reduction of virus particles and at least 95 % recovery of the monoclonal antibody in the permeate. The size difference between the rejected parvovirus particles, 25 nm, and monoclonal antibody, 10-12 nm, is about two. Membranes are designed with pore sizes around the average size of the parvovirus. Given the polydispersity in membrane pore size and virus particles, filter performance is dependent on membrane properties, feed and operating conditions. Compromised performance usually occurs due to product related …

Visualizing The Effect Of Process Pause On Virus Entrapment During Constant Flux Virus Filtration, Wenbo Xu, Xianghong Qian, Hironobu Shirataki, Daniel Straus, Sumith Ranil Wickramasinghe

Biomedical Engineering Faculty Publications and Presentations

Virus filtration is an essential unit operation used to validate clearance of adventitious virus during the manufacture of biopharmaceutical products such as monoclonal antibodies. Obtaining at least a 10,000-fold reduction in virus particles in the permeate is challenging as monoclonal antibodies are about half the size of the virus particles. Minute virus of mice, FDA-recommended model adventitious virus, was labeled with a fluorescent dye. Laser scanning confocal microscopy was used to determine the location of virus entrapment within the virus filtration membrane. Three different hollow fiber membranes made of regenerated cellulose and polyvinylidene fluoride were tested. Feed streams consisted of …

Extending Touch: Investigating Sensorimotor Integration, Cognitive Workload, And Presence With Neuro-Haptic Feedback In Virtual Reality, Aliyah Khadijah Shell

Graduate Theses and Dissertations

Sensory feedback from the hand is fundamental for the coordination of fine motor skills and overall sensorimotor function. Impaired somatosensation during task execution has been associated with the development of inaccurate motor plans, which can hinder motor learning. Virtual Reality (VR) has emerged as a promising tool for motor rehabilitation; however, most VR-based interventions overlook the critical role of tactile feedback in motor control. The absence of touch feedback, which is integral to conventional rehabilitation and training, may limit the full therapeutic potential of VR. Integrating functionally relevant neurostimulation based haptic feedback (neuro-haptic feedback) into VR-based interventions may enhance functional …

Characterizing Piezoelectric-Blended Polydimethylsiloxane For Use As A Mechanoelectrical Responsive Cell Culture Substrate, Alexis P. Applequist, Lance D. Cordes, Lais A. Ferreira, Kartik Balachandran

Biomedical Engineering Faculty Publications and Presentations

In this study, we developed a piezoelectric-polydimethylsiloxane (pz-PDMS) composite by blending poly(vinylidene fluoride-co-trifluoroethylene) (P(VDF-TrFE)) with PDMS to create a biocompatible, mechanoelectrical responsive material. The pz-PDMS was synthesized with varying piezoelectric concentrations (0%, 1%, 3%, and 5%) and characterized for visual properties, mechanical properties, mechanoelectrical sensitivity, and biocompatibility. Compression testing showed no significant change in mechanical strength with the addition of piezoelectric particles, while mechanolectrical sensitivity testing revealed a non-linear increase in voltage response, with 5% pz-PDMS producing the highest sensitivity. Fatigue testing demonstrated no change in sensitivity after 7 days of cyclic displacement. Additionally, microcantilever experiments demonstrated the high fidelity …

Fabrication Of Multimodal Anion Exchange Membrane For Chromatographic Purification Of Full Adeno-Associated Viral Capsids, Xiaolei Hao, Sumith Ranil Wickramasinghe, Xianghong Qian

Biomedical Engineering Faculty Publications and Presentations

A multi-modal anion exchange ligand 2-methyl-phenylimidazole has been successfully functionalized on highly porous electrospun regenerated cellulose membrane substrate for the separation of full and empty adeno-associated viral (AAV) capsids. The functionalized membrane has an average pore size of 0.5 mu m and exhibits both charge and hydrophobic functionality. The ligand is able to distinguish the subtle physio-chemical differences between the full and empty viral capsids. The multi-modal anion exchange membrane is able to separate the full capsids from affinity-captured mammalian AAV2 using both gradient and two-step elution methods with superior performance. A full capsid recovery of 72.9% at 85.3% purity …

Harvesting Aav By Tangential Flow Filtration Using Reverse Asymmetric Membranes, Xiaolei Hao, Ronny Horax, Xianghong Qian, April Wheeler, Hironobu Shirataki, Sumith Ranil Wickramasinghe

Chemical Engineering Faculty Publications and Presentations

Efficient bioreactor clarification for harvesting virus particles is often challenging. Tangential flow filtration is attractive as it can be easily adapted for batch and perfusion operations. Here the feasibility of using reverse asymmetric hollow fiber membranes, where the more open support structure faces the feed stream, has been investigated for harvesting adeno associated virus serotype 2. The open support structure of these membranes stabilizes a secondary membrane consisting of rejected particulate matter. It is essential that the stabilized secondary membrane remains highly permeable. Flux stepping experiments were conducted in total recycle mode in order to determine the critical flux. The …

Tissue Engineered Combinatorial Therapeutics For Spinal Cord Injury Repair, Inha Baek

Graduate Theses and Dissertations

Traumatic spinal cord injury (SCI) lead to temporary or permanent sensorimotor deficit due to the complex and multifaceted features of the injury site, making the treatments ineffective. Recent research emphasizes the potential of combinatorial therapeutics approaches combining different therapeutics, such as biomaterials and stem cell transplantation. In this context, nerve composite hydrogels, fabricated from decellularized sciatic nerve (dSN) and spinal cord (dSC) extracellular matrices (ECM), might be promising platforms due to their biocompatibility and ability to mimic native microenvironments. In this study, we developed and characterized nerve mimetic composite hydrogels embedded with human adipose-derived stem cells (hASCs) and investigated their …

Novel Nanomaterials For Developing Bone Scaffolds And Tissue Regeneration, Nazim Uddin Emon, Lu Zhang, Shelby Dawn Osborne, Mark Allen Lanoue, Yan Huang, Z. Ryan Tian

Cell and Molecular Biology Faculty Publications and Presentations

Nanotechnologies bring a rapid paradigm shift in hard and soft bone tissue regeneration (BTR) through unprecedented control over the nanoscale structures and chemistry of biocompatible materials to regenerate the intricate architecture and functional adaptability of bone. This review focuses on the transformative analyses and prospects of current and next-generation nanomaterials in designing bioactive bone scaffolds, emphasizing hierarchical architecture, mechanical resilience, and regenerative precision. Mainly, this review elucidated the innovative findings, new capabilities, unmet challenges, and possible future opportunities associated with biocompatible inorganic ceramics (e.g., phosphates, metallic oxides) and the United States Food and Drug Administration (USFDA) approved synthetic polymers, including …

Targeted Delivery Of Rapamycin Via Epidermal Growth Factor Receptors In Pancreatic Cancer Cells Inhibits Cell Proliferation And Induces Apoptosis, Adeolu S. Oluremi, Christofer Baldwin, Nickolas L. Gustavision, Mujeebat Bashiru, Adeniyi Nsiah Oyebade, Noureen Siraj, Raj Raghavendra Rao, N. Ali

Biomedical Engineering Faculty Publications and Presentations

Pancreatic cancer (PC) is aggressive and deadly; most PC cells overexpress an epidermal growth factor receptor (EGFR). EGFR-targeting peptide (GE11) was conjugated to gold nanoparticles (AuNPs) for delivering rapamycin (Rap), an mTOR inhibitor that reduces proliferation and induces apoptosis. Biophysical techniques confirmed the conjugation. Rap loading efficiency was 41.5%, with sustained release at a lower pH. Conjugates showed higher uptake in PANC-1 cells than unmodified AuNPs. It also inhibited proliferation and induced apoptosis via pathways involving reactive oxygen species, mitochondrial damage, and caspase activation. This approach represents a promising nanoparticle-based therapeutic strategy targeting PC cells, utilizing GE11-EGFR interactions to minimize …

Intercellular Stress Generation During 1d Collective Migration Of Cancer Cells, Logan Waddle

Physics Undergraduate Honors Theses

Physical forces drive many cellular processes such as migration and proliferation. A metastatic tumor will have invasive strands/chains that extend from the main tumor. These chains of cells collectively migrate away from the main tumor to establish new colonies elsewhere in the body. However, how physical forces drive this collective invasion and the required energy for this process is not well understood. Invasion of a metastatic tumor to surrounding tissues leads to a majority of cancer-associated death and is often a collective effort among cells, it is therefore important to fully understand the process behind collective cancer invasion.

The goal …

Analysis Of The Mechanical, Microstructural, And Biocompatibility Properties Of Novel Magnesium-Based Hybrid Nanocomposite Materials For Orthopedic Applications, Thomas H. Mcgehee

Biomedical Engineering Undergraduate Honors Theses

Bone fractures and complete joint replacements are becoming more common, primarily because of accidents and age-related issues. Conventional solutions to treat these orthopedic injuries involve inert metal alloys to correct bone fractures until the healing process is complete, where a secondary revision surgery is then required to remove the implant. Issues regularly associated with these solutions include stress shielding, bone resorption, infection, inflammation, and implant loosening. Magnesium (Mg)-based nanocomposites offer promising potential as an alternative to commonly used metal alloys because of their favorable mechanical properties and biocompatibility. A particularly advantageous property of Mg is its natural biodegradation in vivo, …

Identifying Novel Molecular Targets To Induce Ferroptosis In Drug-Tolerant Cancer Cells Through Computational Modeling, Haris J. Rana

Biological Sciences Undergraduate Honors Theses

Ferroptosis is an iron-dependent, reactive oxygen species (ROS)-driven form of regulated cell death in which the cell membrane is degraded by lipid peroxidation. It is regulated by multiple enzymes, such as glutathione peroxidase 4 (GPX4), which prevents membrane degradation by reducing lipid peroxides and protecting cells from oxidative damage. When inhibitors like RSL3 target GPX4, lipid peroxides build up, and toxic ROS compromises membrane integrity. Traditional anticancer treatments, such as most chemotherapies, aim to eliminate tumor cells by damaging DNA and triggering apoptosis. However, resistance to apoptosis is a “hallmark of cancer,” often resulting in treatment failure. As a distinct …

Localized Intraarterial Drug Delivery Device, Max P. Green

Biomedical Engineering Undergraduate Honors Theses

Stroke is a prevalent and deadly disorder that causes significant human and economic loss each year. Treatment of stroke is largely done through two routes: intravenous thrombolytic therapy and mechanical thrombectomy. This paper considered a design for a device that combines these two approaches. The device aims to use localized delivery of a thrombolytic agent to a clot site to treat stroke clots. An iterative approach to design was taken to continue to refine device designs generated by previous work. Components, including a balloon for localization, a semi-porous membrane for drug dispersion, and combinations were tested in scaled-up form. Generalizations …