Biomedical Engineering and Bioengineering Commons^™

Evolution Of Raman And Photoluminescence Response In Molybdenum Disulfide Thin Films Deposited Via Thermal Atomic Layer Deposition, Wesley Jen, John D. Hues, Icelene Leong, Nolan H. Olaso, Ravindra K. Kanjolia, Mansour Moinpour, Steven M. Hues, Elton Graugnard

Boise State University Publications and Presentations

In order to enable further advances in microelectronics, new processes capable of precisely depositing films are required. This is especially true of processes meant for depositing two-dimensional (2D) transition metal dichalcogenides, such as MoS2, a material of particular interest due to its high potential mobility even at a thickness of a few atoms. In this work, we report industry-compatible processes for depositing crystalline MoS2 with a high degree of precision. We demonstrate the successful conversion of both MoOx and MoSx films deposited via thermal atomic layer deposition using bis(tert-butylimido)bis(dimethylamino)Mo(VI) and H2O or H2S, respectively, into crystalline MoS2 films after an …

Integrating Neural Control And Finite Element Muscle Modeling: A Predictive Neuromusculoskeletal Framework For Investigating Neurodegenerative Disease, Colton Babcock

Boise State University Theses and Dissertations

Neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS) disrupt the interplay between neural control and musculoskeletal function, leading to progressive motor decline and loss of force control and production. Traditional experimental and clinical approaches are limited in their ability to capture the multiscale, nonlinear mechanisms driving these impairments. This dissertation presents a novel predictive neuromusculoskeletal (NMS) modeling framework that integrates physiologically accurate motor neuron dynamics with three-dimensional finite element (FE) muscle models. Using subject-specific muscle geometry and fiber architecture of the tibialis anterior, the model simulates realistic force generation under both healthy and ALS-affected conditions. The neural component incorporates a …

Harnessing The Mechanical And Gelation Behavior Of Tyramine-Substituted Silk Fibroin Bioinks Through Integration Into A Modular And Low-Cost 3d Bioprinting Platform, Sourjjadeepta Biswas

Boise State University Theses and Dissertations

3D printing has become an indispensable tool in research labs across the globe. Yet, when it comes to bioprinting with custom or sensitive bioinks, accessible options remain limited. Commercial systems are often prohibitively expensive and restricted to proprietary materials, while DIY setups frequently lack the precision and compatibility needed for biologically relevant printing. Moreover, tunable bioinks that align with real-world biological constraints are still hard to come by. To address these gaps, we developed a modular, low-cost bioprinting platform tailored for tyramine-substituted silk fibroin (TA-SF) hydrogels-biocompatible materials known for their rapid gelation, tunable stiffness, and potential to support cell differentiation …

Harnessing Bioscaffold-Coupled Stimulation Through Electroactive Graphene Foam For Enhanced Cellular And Mechanical Responses: Applications In Cartilage Tissue Engineering, Mone't Sawyer

Boise State University Theses and Dissertations

Osteoarthritis is a leading cause of joint degeneration, with limited treatment options that fail to restore native cartilage. Tissue engineering offers a promising strategy by combining cells, scaffolds, and bioactive cues to regenerate functional tissue, though challenges remain in developing systems that integrate and precisely control these signals in three-dimensional environments. This work establishes a scaffold-coupled electrical stimulation (ES) platform using electroactive graphene foam (GF) to modulate cellular and mechanical responses relevant to cartilage tissue engineering. Custom stereolithography-printed bioreactors were developed to deliver low-voltage biphasic square waves (20–60 mVpp, 1 kHz) directly to GF scaffolds under submerged culture, maintaining waveform …

Stimulation And Recording Interfaces For Data Transmission To And From A Micro Neural Stimulation Device, Morgan Riley

Boise State University Theses and Dissertations

Advancements in neuromodulation for treating neurological disorders increasingly rely on selective peripheral nerve stimulation rather than whole-nerve activation. Traditional approaches engage all fascicles, causing off-target effects such as involuntary muscle contractions and pain. To address these challenges, this research proposes a minimally invasive microdevice that integrates wireless galvanic impulse communication with an epineural multi-contact nerve cuff. This design facilitates high-throughput, low-power stimulation, recording, and data transfer. Development efforts include optimizing neural stimulation protocols, validating deep tissue galvanic transmission, and fabricating a multi-channel nerve cuff for stable electrode–tissue interfacing. In parallel, custom depth-controlled intramuscular arrays enable high-density electromyography (EMG) recording during …

Aging Effect On Effective Connectivity Within The Prefrontal-Motor Network And Postural-Related Muscle Responses During Dual-Task Paradigms, Jiahao Pan

Boise State University Theses and Dissertations

Falls are a significant global public issue for older adults, leading to severe health and social impacts. To understand the underlying mechanism of increased fall risk with aging, loss of postural automaticity has been suggested as increased prefrontal cortex and motor cortices activation, as well as worse balance performance in response to the secondary cognitive task. However, the interaction within these cortical regions and its effects on postural-related muscle responses are poorly understood. This dissertation investigated age-related changes in effective connectivity within the prefrontal-motor network, postural related lower limb muscle response, and biomechanical characteristics in response to the secondary cognitive …

Selective Bacterial Biofilm Removal Using Image-Guided Detection And Cold Atmospheric Pressure Plasma, Michael Okebiorun

Boise State University Theses and Dissertations

This dissertation explores the use of cold atmospheric pressure plasma (CAP) technology in eradicating bacterial biofilms from tissue surfaces, using Ps. fluorescens on chicken tissue to model human chronic wounds. It introduces a novel image-guided technique for precise biofilm removal, employing trypan blue staining coupled with advanced computer vision analysis, enhancing the CAP treatment's precision and efficacy. The study demonstrates the CAP device's ability to effectively disrupt biofilms through a non-thermal mechanism, based on its electrical characteristics and operational parameters. The success of the treatment is evident in the significant reduction of biofilm thickness of 49 -185 µm, with the …

Mechanical Environment Influences Muscle Activity During Infant Rolling, Danielle N. Siegel, Safeer F. Siddicky, Wyatt D. Davis, Erin M. Mannen

Mechanical and Biomedical Engineering Faculty Publications and Presentations

An infant's musculoskeletal and motor development is largely affected by their environment. Understanding how different mechanical environments affect an infant's movements and muscle use is necessary to inform the juvenile products industry and reduce incidents involving inclined nursery products each year. The purpose of this study was to determine how the coordinated movements and corresponding muscle activation patterns are affected by different mechanical environments, specifically the back incline angle. Thirty-eight healthy infants (age: 6.5 ± 0.7 months; 23 M/15 F) were enrolled in this IRB-approved in-vivo biomechanics study. Surface electromyography sensors recorded muscle activity of the erector spinae, abdominal muscles, …

Data-Driven And Cell-Specific Determination Of Nuclei-Associated Actin Structure, Nina Nikitina, Nurbanu Bursa, Matthew Goelzer, Madison Goldfeldt, Chase Crandall, Sean Howard, Janet Rubin, Anamaria Zavala, Aykut Satici, Gunes Uzer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Quantitative volumetric assessment of filamentous actin (F-actin) fibers remains challenging due to their interconnected nature, leading researchers to utilize threshold-based or qualitative measurement methods with poor reproducibility. Herein, a novel machine learning-based methodology is introduced for accurate quantification and reconstruction of nuclei-associated F-actin. Utilizing a convolutional neural network (CNN), actin filaments and nuclei from 3D confocal microscopy images are segmented and then each fiber is reconstructed by connecting intersecting contours on cross-sectional slices. This allows measurement of the total number of actin filaments and individual actin filament length and volume in a reproducible fashion. Focusing on the role of F-actin …

On-Demand Fabrication Of Piezoelectric Sensors For In-Space Structural Health Monitoring, Amanda White, Isaac Little, Anastasiya Artyuk, Nicholas Mckibben, Fereshteh Rajabi Kouchi, Claire Chen, David Estrada, Zhangxian Deng

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Inflatable structures, promising for future deep space exploration missions, are vulnerable to damage from micrometeoroid and orbital debris impacts. Polyvinylidene fluoride-trifluoroethylene (PVDF-trFE) is a flexible, biocompatible, and chemical-resistant material capable of detecting impact forces due to its piezoelectric properties. This study used a state-of-the-art material extrusion system that has been validated for in-space manufacturing, to facilitate fast-prototyping of consistent and uniform PVDF-trFE films. By systematically investigating ink synthesis, printer settings, and post-processing conditions, this research established a comprehensive understanding of the process-structure-property relationship of printed PVDF-trFE. Consequently, this study consistently achieved the printing of PVDF-trFE films with a thickness of …

Two-Scale Data-Driven Design For Heat Manipulation, Daicong Da, Wei Chen

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Data-driven methods have gained increasing attention in computational mechanics and design. This study investigates a two-scale data-driven design for thermal metamaterials with various functionalities. To address the complexity of multiscale design, the design variables are chosen as the components of the homogenized thermal conductivity matrix originating from the lower scale unit cells. Multiple macroscopic functionalities including thermal cloak, thermal concentrator, thermal rotator/inverter, and their combinations, are achieved using the developed approach. Sensitivity analysis is performed to determine the effect of each design variable on the desired functionalities, which is then incorporated into topology optimization. Geometric extraction demonstrates an excellent matching …

Muscle Activation And Coordinated Movements Of Infant Rolling, Danielle N. Siegel, Safeer F. Siddicky, Wyatt D. Davis, Erin M. Mannen

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Rolling is a critical step of infant development, encouraging muscle coordination and enabling independent exploration. Understanding muscle activity during infant rolling movements on a flat surface is necessary to more fully characterize how the rolling milestone is achieved. The purpose of this study was to determine infants’ muscle activation throughout roll initiation for six previously established coordinated movements. Thirty-eight healthy infants (age: 6.5 ± 0.7 months; 23M/15F) were enrolled in this IRB-approved in-vivo biomechanics study. Surface electromyography sensors recorded muscle utilization from the erector spinae, abdominal muscles, quadriceps, and hamstrings while infants rolled. Each rolling movement was categorized as one …

Instantaneous Generation Of Subject-Specific Finite Element Models Of The Hip Capsule, Ahilan Anantha-Krishnan, Casey A. Myers, Clare K. Fitzpatrick, Chadd W. Clary

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Subject-specific hip capsule models could offer insights into impingement and dislocation risk when coupled with computer-aided surgery, but model calibration is time-consuming using traditional techniques. This study developed a framework for instantaneously generating subject-specific finite element (FE) capsule representations from regression models trained with a probabilistic approach. A validated FE model of the implanted hip capsule was evaluated probabilistically to generate a training dataset relating capsule geometry and material properties to hip laxity. Multivariate regression models were trained using 90% of trials to predict capsule properties based on hip laxity and attachment site information. The regression models were validated using …

Pedicle Screw Placement Accuracy In Robot-Assisted Spinal Fusion In A Multicenter Study, Victoria L. Volk, Keegan A. Steele, Mia Cinello‑Smith, Richard V. Chua, John Pollina, Gregory Poulter, Eiman Shafa, Peter Busselberg, Clare K. Fitzpatrick

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Pedicle screw fixation is a spinal fusion technique that involves the implantation of screws into vertebral pedicles to restrict movement between those vertebrae. The objective of this research is to measure pedicle screw placement accuracy using a novel automated measurement system that directly compares the implanted screw location to the planned target in all three anatomical views. Preoperative CT scans were used to plan the screw trajectories in 122 patients across four surgical centers. Postoperative scans were fused to the preoperative plan to quantify placement accuracy using an automated measurement algorithm. The mean medial–lateral and superior–inferior deviations in the pedicle …

Computational Comparison Of Medializing Tibial Tubercle Osteotomy And Trochleoplasty In Patients With Trochlear Dysplasia, Clare K. Fitzpatrick, Robert N. Steensen, Oliver Alvarez, Amy E. Holcomb, Paul J. Rullkoetter

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Medial patellofemoral ligament reconstruction (MPFLR) has emerged as the procedure of choice for recurrent patellar dislocation. This addresses soft tissue injury but does not address underlying anatomic factors, including trochlear dysplasia, that are commonly present and increase risk of dislocation. Quantification of the stability offered by other surgical interventions, namely, medializing tibial tubercle osteotomy (mTTO) and trochleoplasty, with and without MPFLR, may provide insight for surgical choices in patients with trochlear dysplasia. We developed subject-specific finite element models based on magnetic resonance scans from a cohort of 20 patients with trochlear dysplasia and recurrent patellar dislocation. The objectives of this …

Effect Of Age On The Mechanical Behavior And Molecular Structure Of Human Meniscus: An Experimental And Computational Analysis, Derek Q. Nesbitt

Boise State University Theses and Dissertations

The knee meniscus is a soft fibrous tissue with a high incidence of injury in older populations. Surgical treatments do not fully restore the functionality of the meniscus, and the meniscus lacks native healing capacity, leading to a 40% increase in the probability of developing osteoarthritis once torn. Meniscus injury prevention is thus paramount to reducing the onset of osteoarthritis. Despite the importance of the meniscus in joint health, its mechanical properties, and how these change with age, are poorly understood. In order to quantify these properties, and how they change with age, we performed uniaxial tensile tests on two …

A Review Of Solar Hybrid Photovoltaic-Thermal (Pv-T) Collectors And Systems, Todd Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

In this paper, we provide a comprehensive overview of the state-of-the-art in hybrid PV-T collectors and the wider systems within which they can be implemented, and assess the worldwide energy and carbon mitigation potential of these systems. We cover both experimental and computational studies, identify opportunities for performance enhancement, pathways for collector innovation, and implications of their wider deployment at the solar-generation system level. First, we classify and review the main types of PV-T collectors, including air-based, liquid-based, dual air–water, heat-pipe, building integrated and concentrated PV-T collectors. This is followed by a presentation of performance enhancement opportunities and pathways for …

Structure-Property-Processing Analysis Of Graphene Bioscaffolds For Viability And Differentiation Of C2c12 Cells, Lynn Karriem

Boise State University Theses and Dissertations

We investigated the structure – property – processing correlation of graphene bioscaffolds produced using three different methods. Bioscaffolds were prepared by chemical vapor deposition (CVD), sublimation of Silicon Carbide (SiC), and printed solvent assisted exfoliated graphene ink. To gain insight into the roughness and topography of graphene, AFM was performed on each bioscaffold. Raman spectroscopy mapping demonstrated differences in the I_2D/I_G ratio for each scaffold. Young’s modulus was determined by nanoindentation and indicated that epitaxial graphene had the highest average stiffness, followed by CVD, with printed graphene demonstrating the lowest average stiffness. To investigate the biocompatibility of …

Spatiotemporal Prediction Of Microstructure Evolution With Predictive Recurrent Neural Network, Amir Abbas Kazemzadeh Farizhandi, Mahmood Mamivand

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Prediction of microstructure evolution during material processing is essential to control the material properties. Simulation tools for microstructure evolution prediction based on physical concepts are computationally expensive and time-consuming. Therefore, they are not practical when either there is an urgent need for microstructure morphology during the process or there is a need to generate big microstructure datasets. Essentially, microstructure evolution prediction is a spatiotemporal sequence prediction problem, where the prediction of material microstructure is difficult due to different process histories and chemistry. We propose a Predictive Recurrent Neural Network (PredRNN) model for the microstructure prediction, which extends the inner-layer transition …

Engineering Cell–Ecm–Material Interactions For Musculoskeletal Regeneration, Calvin L. Jones, Brian T. Penney, Sophia K. Theodossiou

Mechanical and Biomedical Engineering Faculty Publications and Presentations

The extracellular microenvironment regulates many of the mechanical and biochemical cues that direct musculoskeletal development and are involved in musculoskeletal disease. The extracellular matrix (ECM) is a main component of this microenvironment. Tissue engineered approaches towards regenerating muscle, cartilage, tendon, and bone target the ECM because it supplies critical signals for regenerating musculoskeletal tissues. Engineered ECM–material scaffolds that mimic key mechanical and biochemical components of the ECM are of particular interest in musculoskeletal tissue engineering. Such materials are biocompatible, can be fabricated to have desirable mechanical and biochemical properties, and can be further chemically or genetically modified to support cell …

Finite Element Modeling Of Meniscal Tears Using Continuum Damage Mechanics And Digital Image Correlation, Derek Q. Nesbitt, Dylan E. Burruel, Bradley S. Henderson, Trevor J. Lujan

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Meniscal tears are a common, painful, and debilitating knee injury with limited treatment options. Computational models that predict meniscal tears may help advance injury prevention and repair, but first these models must be validated using experimental data. Here we simulated meniscal tears with finite element analysis using continuum damage mechanics (CDM) in a transversely isotropic hyperelastic material. Finite element models were built to recreate the coupon geometry and loading conditions of forty uniaxial tensile experiments of human meniscus that were pulled to failure either parallel or perpendicular to the preferred fiber orientation. Two damage criteria were evaluated for all experiments: …

Board 341: Mobile Learning In Stem: A Case Study In An Undergraduate Engineering Course, Krishna Pakala, Maeve Bakic, Diana Bairaktarova, Devshikha Bose

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Student-centered educational system is needed for better educational outcomes. Technology enabled pedagogy has helped immensely during the pandemic times when rapid transition to remote learning was essential. This poster reports findings on year one of a two-year research study to utilize mobile technologies and a technology-enhanced curriculum to improve student engagement and learning in STEM undergraduate courses. This poster describes a quasi-experimental mixed methods study on implementing mobile devices (iPad and Pencil) and a technology-enhanced curriculum in an undergraduate thermal-fluids engineering course, a foundational engineering class.

The technology-enabled curriculum was fully integrated in the thermal-fluids course to deliver content and …

Architectural Control Of Mesenchymal Stem Cell Phenotype Through Nuclear Actin, Janet Rubin, Andre J. Van Wijnen, Gunes Uzer

Mechanical and Biomedical Engineering Faculty Publications and Presentations

There is growing appreciation that architectural components of the nucleus regulate gene accessibility by altering chromatin organization. While nuclear membrane connector proteins link the mechanosensitive actin cytoskeleton to the nucleoskeleton, actin’s contribution to the inner architecture of the nucleus remains enigmatic. Control of actin transport into the nucleus, plus the presence of proteins that control actin structure (the actin tool-box) within the nucleus, suggests that nuclear actin may support biomechanical regulation of gene expression. Cellular actin structure is mechanoresponsive: actin cables generated through forces experienced at the plasma membrane transmit force into the nucleus. We posit that dynamic actin remodeling …

Tibial Compression During Activities Of Daily Living In Young And Older Adults, Elijah Miles Walker

Boise State University Theses and Dissertations

Introduction: Stress fracture, particularly in the tibia, is a growing concern among older adults (greater than 65 years). Older adults may have inherent stress fracture risk from ageing-related changes to their musculoskeletal system. Specifically, older adults reduced ankle neuromuscular function may impair their ability to attenuate repetitive compressive forces experienced during daily locomotor tasks and increase the likelihood of suffering bone damage from decreased bone tissue elasticity. Yet, it is currently unknown if older adults exhibit greater tibial compression than their younger counterparts during locomotor tasks. Purpose: This study sought to quantify tibial compression for older and younger adults when …

Musculoskeletal Adaptation Of Young And Older Adults In Response To Challenging Surface Conditions, Amy E. Holcomb, Nicholas L. Hunt, Amanda K. Ivy, Aidan G. Cormier, Tyler N. Brown, Clare K. Fitzpatrick

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Over 36 million adults over 65 years of age experience accidental falls each year. The underlying neuromechanics (whole-body function) and driving forces behind accidental falls, as well as the effects of aging on the ability of the musculoskeletal system to adapt, are poorly understood. We evaluated differences in kinematics (lower extremity joint angles and range of motion), kinetics (ground reaction force), and electromyography (muscle co-contraction), due to changes in surface conditions during gait in 14 older adults with a history of falling and 14 young adults. We investigated the impact of challenging surfaces on musculoskeletal adaptation and compared the mechanisms …

Experimental Investigation Of Low Velocity And High Temperature Solid Particle Impact Erosion Wear, Evan Gietzen, Soroor Karimi, Nipun Goel, Siamack A. Shirazi, Michael Keller, Todd Otanicar

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Next generation Concentrating Solar Power (CSP) plants utilizing solid particles as the heat transfer medium (HTM) are expected to achieve greater operational efficiencies. However, the erosion from the solid particles can cause significant damage to component materials. Low particle speeds (1–2 m/s) are proposed as a means of preventing excessive damage to containment materials. Within the current investigation, solid particle erosion of three potential containment materials, stainless-steel grade 316L, a nickel alloy (Inconel 740H), and a refractory material (Tufcrete 60 M), are examined at a particle impact speed of 1.6 m/s. CarboBead-HSP 40/70 particles, a candidate HTM for CSP systems, …

Energy Consumption Analysis Using Measured Data From A Net-Zero Energy Commercial Building In A Cold And Dry Climate, Sukjoon Oh, John F. Gardner

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Zero-energy buildings have a critical role in reducing global energy use and greenhouse gas emissions. However, few studies have analyzed net-zero energy commercial buildings using measured energy use such as whole-building level and end-use level data. This paper presents an energy consumption analysis for the first net-zero energy commercial building in Idaho, U.S., in a cold and dry climate using measured end-use data from this building as well as measured whole-building energy use. Monthly bill data analysis, end-use data analysis, and Energy Use Intensity (EUI) analysis were conducted. The combined analysis of this study shows that the HVAC system was …

Predicting Surgical Outcome In Patients With Recurrent Patellar Dislocation, Dario De Caro

Boise State University Theses and Dissertations

Introduction

Lateral dislocation of the patella is a common injury in active adolescents and young adults. Patients who are ultimately managed surgically have a significantly lower risk of recurrent dislocation. However, determining the optimal surgical treatment remains a challenge, with patients sometimes undergoing multiple surgeries prior to successful stabilization. The aim of this study is to computationally evaluate patients that have undergone multiple surgeries to correct for recurrent lateral patellar dislocation and predict their clinical outcome.

Methods

Our patient cohort consisted of 16 patients with patella dislocation. Patient-specific imaging were used to create three-dimensional (3D) finite element (FE) models of …

Integrated Neuromusculoskeletal Modeling Within A Finite Element Framework To Investigate Mechanisms And Treatment Of Neurodegenerative Conditions, Victoria L. Volk

Boise State University Theses and Dissertations

Neurodegenerative and neurodevelopmental disorders are a group of conditions that stem from irregularities in the nervous system that lead to complications in function and movement. The goal of this work is to develop computational tools that: (1) measure the accuracy of surgical interventions in neurodegenerative and neurodevelopmental conditions, and (2) integrate neural and musculoskeletal frameworks to provide a platform to better investigate neurodegenerative and neurodevelopmental disorders. Parkinson’s disease (PD) is a neurodegenerative condition projected to affect over 1.2 million people by 2030 in the US. It is caused by atypical firing patterns in the basal ganglia region of the brain …

Large Scale Energy Signature Analysis: Tools For Utility Managers And Planners, Sukjoon Oh, John F. Gardner

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Building energy signature analysis is a well-established tool for understanding the temperature sensitivity of building energy consumption and measuring energy savings. This tool has been used to measure energy savings of residential, commercial, and even industrial buildings. The public availability of electricity loads (i.e., hourly electricity demand (MW)) from entire Balancing Authorities (BAs) provide an interesting opportunity to apply this approach to a large aggregate load. In this paper, we explore that opportunity for BAs and show that the correlations for large geographical areas are surprisingly coherent when the change-point linear regression analysis is used with the daily interval data …