Biomedical Engineering and Bioengineering Commons^™

Biom 2720: Experimental Design And Analysis For Biomedical Engineering (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Application of probability, statistics, error analysis, uncertainty in design and performance of biomedical engineering experimentation; discussion and evaluation of common experimental designs for medical device development.

Engr 1009: Preparation For Engineering Problem Solving (Syllabus), Stephen Strain

Biomedical Engineering Syllabi Archive

Course Description: Applications of algebra and trigonometry to engineering problems. Accelerated preparation for an engineering or technology major.

Investigating Tgf-Β1 And Fibronectin Signaling In Low Oxygen Environments, Caitlin E. Williams

Theses and Dissertations

Breast cancer is the second leading cause of death in women, second to lung cancer. It’s one of the most well-known cancers, with almost 300,000 new cases estimated to be diagnosed in 2023. Breast cancer often begins in ductal epithelial cells, and these cells will typically undergo a cellular transformation process known as epithelial-mesenchymal transition (EMT) in early stages. Breast cancer becomes deadly when it reaches a metastatic stage. As a part of the metastatic process, transformed cells will conduct remodeling of the extracellular matrix (ECM) to allow for migration of an otherwise non-migratory cell type.

As dense tumors form, …

Experimental Evaluation Of Micro-Epidermal Actuators On Flexible Substrates, Courtney D. Bradley

Graduate Research Theses & Dissertations

Does embedding actuators in a flexible substrate increase their performance in hearing aids? What are the differences in damping experienced by actuators of different diameters and at different locations? At what frequency is peak acceleration achieved and what role does the size of the actuator and embedding it in a flexible substrate play? These questions will form the basis of this thesis. This work was done to develop a small non-invasive Band-Aid-©-like hearing aid. The novelty of this device requires a detailed analysis of piezoelectric actuators. This is a continuation of past students’ work on the topic. The main parameters …

Surface Modified Titanium And Doxycycline Loaded Pcl/Plga Nanofibers For Improved Cellular Interaction And Biocompatability, Dexter D. Kling

Graduate Research Theses & Dissertations

Biomaterials play an important role in modern medicine through their complexfunctionalities, as implants, grafts, and drug delivery systems. The addition of dopants and biomolecules in biomaterials offers unique solutions to common issues and provides new methods of improving overall health. In our work, we examined osteoblast cell interactions with titanium (Ti) after alkali treatment and deposition of magnesium (Mg) and iron (Fe). We also studied the antibacterial properties of doxycycline loaded polymeric nanofibers produced via electrospinning. To study the biological properties of surface-modified Ti, we first prepared commercially pure titanium samples by grinding and polishing, then performed alkali treatment in …

Reconfigurable Microfluidic Circuits Through Modular Surface Driven Microfluidic Diode Valves, Selina Cervantes

Graduate Research Theses & Dissertations

In this thesis, we explore the rapidly evolving landscape of healthcare and diagnostics, shaped by the transformative impact of the COVID-19 pandemic. The focus of Point-of-care showcases innovative breakthroughs in microfluidics, capillary action, and lateral flow technology that are revolutionizing medical diagnostics. We delve into the mechanics of current assays, particularly in resource-limited settings. We then unveiled the introduction of a novel fluidic diode valve, designed to enhance lateral flow assays (LFAs) for point-of-care diagnostics. This diode design boasts a unidirectional flow mechanism, and our proof-of-concept experiments validate its potential for scalability, precise flow control, and applications in complex lateral …

Studying And Troubleshooting Lubricity Test On Pressure Wire X Proximal And Distal Coatings, Usama A. Khan

All Graduate Theses, Dissertations, and Other Capstone Projects

Coatings of guidewires used in medical device manufacturing industry are one of the most important element aspects. It defines its efficiency to penetrate through tightest of canals and curves. Guidewires are put through controlled environment to accelerate its age and tested for its mechanical features. Pressure Wire X failed the lubricity testing after being tested by multiple operators and at alternate sites. A cause-and-effect diagram shows all potential causes of test failure. The human factor involved in the test failure was investigated through multiple Gage R&R and training records. Calibration error with the lubricity tester DL1000 was identified and solved …

Finite Element Analysis Of 3d-Printed Pcl Scaffolds, Ireolu K. Orenuga, Joao Soares, Phillip D. Glass, Daeha Joung Ph.D.

UROP Posters

Finite Element Analysis of 3D-printed PCL Scaffolds for Synergizing Cellular Micro-Environment and Mechanical Stimuli to Enhance Engineered Tissue Growth in Vitro

Ireolu Orenuga,1 Phillip Glass,2 Daeha Joung,2 Joao S. Soares1

1. Department of Mechanical and Nuclear Engineering, College of Engineering, Virginia Commonwealth University
2. Department of Physics, College of Humanities & Sciences, Virginia Commonwealth University

Introduction: Tissue engineering aims to create viable and functional engineered tissues via biodegradable scaffolds and autologous cells. Scaffolds play an essential part in organizing the architecture of developing tissues and aid in the proper function of implants acutely by serving as mechanical support and long-term by …

Mechanical Design Of A Microwave Imaging Device For Breast Cancer Detection In Mri Scanners, Grace M. Player

Dartmouth College Master’s Theses

This project seeks to develop an updated version of a microwave imaging device for use in conjunction with breast MRI, improving upon existing technology and developing novel concepts for the device. It posits three primary redesign targets for updating the previous system: resizing the system height, making the device more iteration- friendly, and improving the overall manufacturability of the device by replacing custom components with commercially available alternatives. All three of these redesign targets are met in the new design, V2.0. The height is reduced by reducing antenna travel and height, embedding some components, and shortening the tank wall, resulting …

Using Paired-Agent Imaging To Track Changes In Head And Neck Cancers After Undergoing Photodynamic Therapy Treatment, Reeham M. Choudhury

Dartmouth College Master’s Theses

Head and neck cancers affect thousands of people across the world, and photodynamic therapy (PDT) has been shown to have great potential to treat said cancers in a noninvasive manner. However, imaging head and neck cancers has been difficult, and molecular changes caused by PDT are not well-understood. Therefore, we propose the use of paired-agent imaging (PAI) to track changes in these cancers after after PDT treatment. For these studies, we primarily used benzoporphyrin derivative monoacid (BPD) for our photosensitizer, which is activated by a 690 nm laser. We first looked at changes in EGFR expression in vitro, and …

Marineepi: A Gui-Based Matlab Toolbox To Simulate Marine Pathogen Transmission, Gorka Bidegain, Tal Ben-Horin, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

CCPO Publications

The Graphical User Interface (GUI) MarineEpi is presented as a Matlab toolbox for easily (i) constructing disease transmission models for different marine host-pathogen systems, (ii) running simulations by specifying initial conditions and model parameters, and (iii) interpreting the resulting time series of the host and pathogen population dynamics. MarineEpi users can generate models for systems in which pathogen transmission occurs through contact with infected individuals (SI), contact with dead infected individuals (SID), contact with environmental pathogens released by infected individuals (SIP), and contact with environmental pathogens released by dead infected individuals (SIPD). MarineEpi is a freely available GUI that provides …

Integrating The Spatial Pyramid Pooling Into 3d Convolutional Neural Networks For Cerebral Microbleeds Detection, Andre Accioly Veira

CCAC Theses and Dissertations

Cerebral microbleeds (CMB) are small foci of chronic blood products in brain tissues that are critical markers for cerebral amyloid angiopathy. CMB increases the risk of symptomatic intracerebral hemorrhage and ischemic stroke. CMB can also cause structural damage to brain tissues resulting in neurologic dysfunction, cognitive impairment, and dementia. Due to the paramagnetic properties of blood degradation products, CMB can be better visualized via susceptibility-weighted imaging (SWI) than magnetic resonance imaging (MRI).CMB identification and classification have been based mainly on human visual identification of SWI features via shape, size, and intensity information. However, manual interpretation can be biased. Visual screening …

Embok 5.0 - Industry 4.0/5.0 Manifest And Latent Dimensions Mapping To The Asem Embok, T. Steven Cotter

Engineering Management & Systems Engineering Faculty Publications

Industry 3.0 automation emerged replacing human labor with high volume processes and robotics. Industry 4.0, cyber-physical systems, and Industry 5.0, mass customization and cognitive systems, are in the early stages of emergence. Research into the impact of Industry 4.0 and 5.0 is focused at the strategic or organizational levels or on the technological challenges. Research into the impact of Industry 4.0 and 5.0 on engineering management has been limited to their impact on project management. This leaves open the question of the directions in which ASEM should evolve the Engineering Management Body of Knowledge (EMBOK) under the emergence of Industry …

Does Self-View Mode Generate Video Conferencing Fatigue? An Experiment Using Eeg Signals, Jin Xu, Eoin Whelan, Ann O'Brien, Denis O’Hora

Conference papers

The ability to see or hide one’s own image is a typical feature of video conferencing platforms. This study will conduct an EEG-based neurobiological experiment to determine if the self-view mode generates video conference fatigue and if this differs between males and females. 40 volunteers will participate in a simulated video conference meeting with the self-view mode on and off at different times. In addition, an EEG-based fatigue monitor will be proposed to demonstrate the level of human mental fatigue. The experimental insights will provide direct biological evidence of the impact of video conferencing features on the user experience and …

Design And Fabrication Of A Force-Displacement Control Mechanism For Bone-Surgical Tool Testing, Kenneth Nwagu

College of Graduate Studies: Theses & Dissertations

This project focuses on the design and fabrication of an experimental setup for orthopedic-tool testing, tailored for a surgical instrumentation company. The multifaceted project encompasses a literature review, conceptual design, prototyping, and rigorous testing, resulting in a versatile control system capable of assessing various orthopedic tools, including bone drills, saws, burrs, and power handpieces.

Orthopedic surgical procedures (which include cutting and/or drilling into bone) often need to be performed on bones for faster recovery. The drilling and cutting process can cause an increase in temperature at the cutting site which can cause bone necrosis. The tools also need to be …

When Intercepting Moving Targets, Mid-Movement Error Corrections Reflect Distinct Responses To Visual And Haptic Perturbations, Pablo Gonzalez Polanco, Leigh A. Mrotek, Kristy A. Nielson, Scott A. Beardsley, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

We examined a key aspect of sensorimotor skill: the capability to correct performance errors that arise mid-movement. Participants grasped the handle of a robot that imposed a nominal viscous resistance to hand movement. They watched a target move pseudo-randomly just above the horizontal plane of hand motion and initiated quick interception movements when cued. On some trials, the robot's viscosity or the target's speed changed without warning coincident with the GO cue. We fit a sum-of-Gaussians model to mechanical power measured at the handle to determine the number, magnitude, and relative timing of submovements occurring in each interception attempt. When …

Utility And Usability Of Two Forms Of Supplemental Vibrotactile Kinesthetic Feedback For Enhancing Movement Accuracy And Efficiency In Goal-Directed Reaching, Ramsey K. Rayes, Rachel N. Mazorow, Leigh A. Mrotek, Robert A. Scheidt

Biomedical Engineering Faculty Research and Publications

Recent advances in wearable sensors and computing have made possible the development of novel sensory augmentation technologies that promise to enhance human motor performance and quality of life in a wide range of applications. We compared the objective utility and subjective user experience for two biologically inspired ways to encode movement-related information into supplemental feedback for the real-time control of goal-directed reaching in healthy, neurologically intact adults. One encoding scheme mimicked visual feedback encoding by converting real-time hand position in a Cartesian frame of reference into supplemental kinesthetic feedback provided by a vibrotactile display attached to the non-moving arm and …

Aortic Remodeling Kinetics In Response To Coarctation-Induced Mechanical Perturbations, Arash Ghorbannia, Mehdi Maadooliat, Ronald K. Woods, Said H. Audi, Brandon J. Tefft, Claudio Chiastra, El Sayed H. Ibrahim, John F. Ladisa Jr.

Biomedical Engineering Faculty Research and Publications

Background: Coarctation of the aorta (CoA; constriction of the proximal descending thoracic aorta) is among the most common congenital cardiovascular defects. Coarctation-induced mechanical perturbations trigger a cycle of mechano-transduction events leading to irreversible precursors of hypertension including arterial thickening, stiffening, and vasoactive dysfunction in proximal conduit arteries. This study sought to identify kinetics of the stress-mediated compensatory response leading to these alterations using a preclinical rabbit model of CoA.

Methods: A prior growth and remodeling (G&R) framework was reformulated and fit to empirical measurements from CoA rabbits classified into one control and nine CoA groups of various severities …

Thermotrophy Exploratory Study, James Weifu Lee

Chemistry & Biochemistry Faculty Publications

The question of whether environmental heat energy could be utilized as a source of energy for biological metabolism is the center of this exploratory research. In 1979, this author postulated a hypothesis for the existence of thermotrophs that could isothermally utilize environmental heat energy as a source of their energy on Earth. According to this hypothesis, the thermotrophs could be the first primitive forms of life in the early Earth environment. The chemotrophs and phototrophs that we currently are all well familiar with might have been evolved somehow from the primitive thermotrophs. Furthermore, all the organisms currently regarded as the …

Synthesis Of A Series Of Trimeric Branched Glycoconjugates And Their Applications For Supramolecular Gels And Catalysis, Jonathan Bietsch, Anji Chen, Dan Wang, Guijun Wang

Chemistry & Biochemistry Faculty Publications

Carbohydrate-derived molecular gelators have found many practical applications as soft materials. To better understand the structure and molecular gelation relationship and further explore the applications of sugar-based gelators, we designed and synthesized eight trimeric branched sugar triazole derivatives and studied their self-assembling properties. These included glucose, glucosamine, galactose, and maltose derivatives. Interestingly, the gelation properties of these compounds exhibited correlations with the peripheral sugar structures. The maltose derivative did not form gels in the tested solvents, but all other compounds exhibited gelation properties in at least one of the solvents. Glucose derivatives showed superior performance, followed by glucosamine derivatives. They …

Machine Learning And Deep Learning Approaches For Gene Regulatory Network Inference In Plant Species, Sai Teja Mummadi

Dissertations, Master's Theses and Master's Reports

The construction of gene regulatory networks (GRNs) is vital for understanding the regulation of metabolic pathways, biological processes, and complex traits during plant growth and responses to environmental cues and stresses. The increasing availability of public databases has facilitated the development of numerous methods for inferring gene regulatory relationships between transcription factors and their targets. However, there is limited research on supervised learning techniques that utilize available regulatory relationships of plant species in public databases.

This study investigates the potential of machine learning (ML), deep learning (DL), and hybrid approaches for constructing GRNs in plant species, specifically Arabidopsis thaliana, …

Collagen V Promotes Fibroblast Contractility, And Adhesion Formation, And Stability, Shaina P. Royer-Weeden

Dissertations, Master's Theses and Master's Reports

Ehlers-Danlos syndrome, classical type, (cEDS) is a hereditary connective tissue disorder causing excessive elasticity and fragility of the connective tissue and problems with wound healing. Most cases of cEDS are caused by haploinsufficiency for collagen V. Collagen V regulates collagen fibril diameter. In cEDS fibroblast migration is impaired and integrin expression is altered.

The effects of collagen V on collagen gel ultrastructure and how it alters its mechanical properties were measured using scanning electron microscopy (SEM) and rheology respectively. Fibroblast contractility and adhesion dynamics were investigated to better understand the role of fibroblast disfunction in wound healing in cEDS. To …

Nanomaterials For Cardiovascular Engineering, Roya Bagheri

Dissertations, Master's Theses and Master's Reports

Cardiovascular diseases and disorders (i.e., those related to heart and blood vessels) are the main reasons for mortality worldwide. Nanomaterials, with their unique morphologies and properties, have a great potential for advancing cardiovascular engineering to treat diseases and disorders. In this dissertation, several cardiovascular applications of conductive nanomaterials were investigated. First, a conductive nanomaterial was explored to fabricate biohybrid nanomaterial-cardiomyocyte (CM – heart muscle cell) systems. Using Carbon Nanotube (CNT) forest as a 3D porous and conductive scaffold was investigated. The influence of the CNT forest on the viability, attachment, and spreading of CMs and their genetic information was …

Advanced Tools For Time-Resolved Imaging Of Tissue Metabolism, Arthur Petusseau

Dartmouth College Ph.D Dissertations

Medical imaging is a crucial tool in diagnosing and treating diseases, and by far the most common set of tools used for point-of-care guidance between a physician and patient are optical devices. For example, visible light imaging has unique applications in endoscopy, dermatology, microscopy, and this range of devices utilize a wide range of optical signals for sensing the tissue. Fluorescence imaging has become a niche but growing methodology in medical diagnostics and treatment because of its simplicity and the ability to integrate reporter molecules, that can reveal detailed information about cellular structures, metabolism, signaling, and other biomolecular features of …

Design Of Next-Generation Neural Interfaces For Decoding The Brain, Yi Qiang

Dartmouth College Ph.D Dissertations

The primary goal of neural interface technology is to establish a connection between the nervous system and the external world by recording and modulating neural signals. Over the past few decades, microelectrode array (MEA) technology has played an essential role in the acquisition of electrophysiological signals, with impressive progress being made towards developing high-density, large-throughput, and ultra-flexible MEAs. However, despite these advancements, there remain long-standing limitations in current neural interfaces. For example, electrophysiology is limited in its ability to distinguish cell types and has limited spatial resolution due to its electrical recording nature. Furthermore, conventional neural MEAs are limited to …

Zinc Oxide Based Nanomaterials And Device Designs - For Bioenergy Harvesting, Sensing And Water Purification, Congran Jin

Dartmouth College Ph.D Dissertations

Biomechanical energy harvested from the human body can power implantable electronics such as cardiac pacemakers, replacing conventional batteries and offering a lifelong energy solution. The electrical signals converted from biomechanical motions contain vital physiological information, making them suitable as a sensor to monitor one's health condition. Zinc Oxide (ZnO) is a versatile material with various intriguing properties, including piezoelectricity, photo-catalytic and piezo-catalytic properties. This thesis aims to exploit and enhance these properties of ZnO by rationally designing its nano- and micron-structures and employing them, along with other functional materials, in the development of novel biomechanical energy harvesting, water purification, and …

High Throughput Cellular Screening Technologies For Engineering Enhanced-Solubility And Deimmunized Biologics, Andrew Y. Chang

Dartmouth College Ph.D Dissertations

High throughput cell-based screening methodologies have become core development tools for the generation and engineering of various biotherapeutics. For example, SpCas9 variants for use in CRISPR-Cas9 therapeutics have been engineered for enhanced specificity using a high throughput directed evolution approach in E. coli. Additionally, antibodies are routinely discovered and engineered for high affinity binding using yeast surface display. These high throughput techniques typically involve generation of large protein libraries which require innovative screening strategies depending on the target protein’s function. In this thesis work, we describe high throughput protein library screening approaches to address recombinant biologic aggregation and immunogenicity …

Brain Activity Associated With Taste Stimulation: A Mechanism For Neuroplastic Change?, Angela M. Dietsch, Ross M. Westemeyer, Douglas H. Schultz

Department of Special Education and Communication Disorders: Faculty Publications

Purpose: Neuroplasticity may be enhanced by increasing brain activation and bloodflow in neural regions relevant to the target behavior.We administered precisely formulated and dosed taste stimuli to determine whether the associated brain activity patterns included areas that underlie swallowing control.

Methods: Five taste stimuli (unflavored, sour, sweet-sour, lemon, and orange suspensions) were administered in timing-regulated and temperature-controlled 3 mL doses via a customized pump/tubing system to 21 healthy adults during functional magnetic resonance imaging (fMRI). Whole-brain analyses of fMRI data assessed main effects of taste stimulation as well as differential effects of taste profile.

Results: Differences in …

Increased Liver Stiffness Promotes Hepatitis B Progression By Impairing Innate Immunity In Ccl4-Induced Fibrotic Hbv+ Transgenic Mice, Grace Bybee, Youra Moeun, Weimin Wang, Kusum K. Kharbanda, Larisa Y. Poluektova, Srivatsan Kidambi, Natalia A. Osna, Murali Ganesan

Department of Chemical and Biomolecular Engineering: Faculty Publications

Background: Hepatitis B virus (HBV) infection develops as an acute or chronic liver disease, which progresses from steatosis, hepatitis, and fibrosis to end-stage liver diseases such as cirrhosis and hepatocellular carcinoma (HCC). An increased stromal stiffness accompanies fibrosis in chronic liver diseases and is considered a strong predictor for disease progression. The goal of this study was to establish the mechanisms by which enhanced liver stiffness regulates HBV infectivity in the fibrotic liver tissue. Methods: For in vitro studies, HBV-transfected HepG2.2.15 cells were cultured on polydimethylsiloxane gels coated by polyelectrolyte multilayer films of 2 kPa (soft) or 24 kPa (stiff) …

Mesenchymal Stromal Cells And Alpha-1 Antitrypsin Have A Strong Synergy In Modulating Inflammation And Its Resolution, Li Han, Xinran Wu, Ou Wang, Xiao Luan, William Velander, Michael Aynardi, E. Scott Halstead, Anthony S. Bonavia, Rong Jin, Guohong Li, Yulong Li, Yong Wang, Cheng Dong, Yuguo Lei

Department of Chemical and Biomolecular Engineering: Faculty Publications

Rationale: Trauma, surgery, and infection can cause severe inflammation. Both dysregulated inflammation intensity and duration can lead to significant tissue injuries, organ dysfunction, mortality, and morbidity. Anti-inflammatory drugs such as steroids and immunosuppressants can dampen inflammation intensity, but they derail inflammation resolution, compromise normal immunity, and have significant adverse effects. The natural inflammation regulator mesenchymal stromal cells (MSCs) have high therapeutic potential because of their unique capabilities to mitigate inflammation intensity, enhance normal immunity, and accelerate inflammation resolution and tissue healing. Furthermore, clinical studies have shown that MSCs are safe and effective. However, they are not potent enough, alone, to …