Biochemical and Biomolecular Engineering Commons^™

The Effect Of Nanoconfined Liquid Properties On The Water-Responsive Behavior Of Bacterial Cell Walls, Seungri Kim

Dissertations and Theses

Water-responsive (WR) materials have the ability to mechanically swell and shrink in response to changes in relative humidity (RH). These WR materials are used by many biological systems to perform essential tasks; for example, pinecones use WR materials to release their seeds in dry environments, and wheat awns open and close to propel seeds into the soil, driven by daily RH changes. The WR actuation of some biomaterials is extremely powerful, for example Bacillus subtilis cell walls display record-high actuation energy and power densities of 72 MJ m^-3 and 9.1 MW m^-3, surpassing those of all existing …

The Racial Disparities Of The Gamma-Secretase/Notch Pathway And Inhibition In Triple Negative Breast Cancer, Jobin Joseph

Dissertations and Theses

Triple Negative Breast Cancer (TNBC) continues to be a formidable challenge in oncology, characterized by its aggressive phenotype and limited treatment options. Alarming racial disparities in TNBC outcomes persist, with underrepresented populations experiencing disproportionately higher rates of mortality and poorer prognoses. This master's thesis aims to delve into the molecular intricacies that contribute to these disparities, with a specific focus on gamma secretase activity, a key regulator of cellular processes.

The research methodology encompasses a multi-faceted approach, amalgamating clinical data analysis with extensive in vitro and in vivo experimentation. The study employs cutting-edge molecular profiling techniques and gene expression analysis …

Hydrodynamics Of Drops And Particles Driven By Marangoni And Diffusiophoretic Forces, Subramaniam Chembai Ganesh

Dissertations and Theses

This study investigates the hydrodynamics of particles and drops driven by forces generated by an asymmetrical physical and chemical surrounding environment. In the first part, a novel colloidal motor design driven by surface tension forces is proposed, utilizing an active Janus particle encapsulated in an immiscible liquid drop to form a compound drop/particle. Marangoni forces induced by asymmetric solute adsorption at the liquid-liquid interface of the drop propels the compound system. The propulsion speeds of the motor are analyzed for various relative sizes and configurations of the Janus particle and the encapsulating drop and the effects of varying the transport …

Lessons Learned From Laboratory Study And Field Application Of Re-Crosslinkable Preformed Particle Gels Rppg For Conformance Control In Mature Oilfields With Conduits/Fractures/Fracture-Like Channels, Baojun Bai, Thomas P. Schuman, David Smith, Tao Song

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

This Paper Surveys the Role of Re-Crosslink able Preformed Particle Gels (RPPG) in Addressing Conformance Challenges within Mature Oilfields. Despite Widespread Preformed Particle Gel (PPG) Application in 15,000+ Wells, their Limitations in Sealing Fractures and Conduits Prevalent in Mature Reservoirs Have Driven the Development of RPPG Formulations. Synthesized in Various Sizes from Micrometer to Millimeter Levels, These Environmentally Friendly RPPGs Are Tailored for Diverse Reservoir Conditions. Findings Showcase the Successful Laboratory-Scale Creation and Upscaling of RPPG Products, Offering Adaptability to Temperatures from 20 to 175°C, Customizable Sizes, Swelling Ratios (5 to 40 Times), and Re-Crosslinking Times Spanning Minutes to Days. …

Novel Re-Crosslinkable Preformed Particle Gels (Rppg) For Parent- And Infill-Well-Fracture Interactions Mitigation, Xiaojing Ge, Adel Alotibi, Ahmed Al-Hlaichi, Yanbo Liu, Tao Song, Junchen Liu, Baojun Bai, Thomas P. Schuman

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Hydraulic fracturing treatments in unconventional infill (or "child") wells can be significantly affected by depletion from existing parent-well, resulting in asymmetrical fracture growth. These issues may lead to excessive load-water production, proppant deposition, casing deformation in the parent well, and unbalanced stimulation of infill wells. To mitigate these effects, various strategies have been proposed, including the use of far-field diverters in child wells and repressurization of parent wells. Additionally, an increasingly popular strategy involves injecting near-wellbore diverters to temporarily plug entry points into the parent wellbores during frac operations on infill wells. To achieve better application, a novel low-cost, self-degradable, …

Descriptive Statistical Analysis Of Experimental Data For Wettability Alteration With Smart Water Flooding In Carbonate Reservoirs, Muhammad Ali Buriro, Mingzhen Wei, Baojun Bai, Ya Yao

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Smart water flooding is a promising eco-friendly method for enhancing oil recovery in carbonate reservoirs. the optimal salinity and ionic composition of the injected water play a critical role in the success of this method. This study advances the field by employing machine learning and data analytics to streamline the determination of these critical parameters, which are traditionally reliant on time-intensive laboratory work. the primary objectives are to utilize data analytics to examine how smart water flooding influences wettability modification, identify key parameter ranges that notably alter the contact angle, and formulate guidelines and screening criteria for successful lab design. …

Engineering Mussel Foot Protein 5 (Mfp5) For Enhanced Adhesive Performance In Tendon And Bone Repair, Ziyue Zhu

McKelvey School of Engineering Graduate Student Theses & Dissertations

This study explores the development of Mussel Foot Protein 5 (MFP5) bioadhesives to improve tendon-to-tendon and tendon-to-bone adhesive outcomes. MFP5, known for its underwater adhesive properties, was synthesized using recombinant techniques and optimized through coacervation and cross-linking. Adhesion tests demonstrated the superior performance of the optimized MFP5 adhesive on the tendon and bone samples. Improved protein concentration testing and purification methods enhanced MFP5 yield and consistency. Future research will focus on further standardization, exploring alternative purification methods, and evaluating the adhesive's performance in animal models. This study lays a foundation for developing robust MFP5-based bioadhesives, potentially revolutionizing surgical repair techniques …

Continuous, Platform Purification Of Viral Products Using Aqueous Two-Phase Extraction, Natalie M. Nold

Dissertations, Master's Theses and Master's Reports

Cell and gene therapies, a ground-breaking class of drugs that can heal genetic diseases and cure cancer, often have treatment costs over $1 million. Most cell and gene therapies are delivered using virus-based delivery vectors, which are incredibly expensive to manufacture. Liquid chromatography is the favored method of viral vector purification since it is easily scalable and can be functionalized to purify by biospecificity, charge, hydrophobicity, or size. However, chromatography-based purification processes are highly expensive and usually only recover 20-50% of the viral vectors. There is currently no platform purification strategy for viral vectors due to differences in their surface …

Optimizing Diabetes Diagnostics: Electrophoretic Separation And Detection Of Hemoglobin A1c With Boronate, Rixlie Fozilova

Dissertations, Master's Theses and Master's Reports

Diabetes affects 537 million people worldwide, while 136 million Americans have diabetes or prediabetes; roughly 22.6% of individuals are undiagnosed. Diabetes is the inability to regulate blood sugar levels. Hemoglobin A1c (HbA1c) is glycosylated hemoglobin and indicates average blood sugar levels over the past three months.

We adapted the selective boronic acid binding to the HbA1c sugar moieties from boronate affinity chromatography and translated it into a portable microchip paper-based electrophoresis platform. We explored a range of boronate concentrations at a steady voltage and sample volume to determine the optimal HbA1c binding and subsequent electrophoretic separation. A pH above 11 …

Synthetic Approaches Of Carbohydrate Based Self-Assembling Systems, Guijun Wang, Anji Chen, Pramod Aryal, Jonathan Bietsch

Chemistry & Biochemistry Faculty Publications

Carbohydrate-based self-assembling systems are essential for the formation of advanced biocompatible materials via a bottom-up approach. The self-assembling of sugar-based small molecules has applications encompassing many research fields and has been studied extensively. In this focused review, we will discuss the synthetic approaches for carbohydrate-based self-assembling (SA) systems, the mechanisms of the assembly, as well as the main properties and applications. This review will mainly cover recent publications in the last four years from January 2020 to December 2023. We will essentially focus on small molecule self-assembly, excluding polymer-based systems, which include various derivatives of monosaccharides, disaccharides, and oligosaccharides. Glycolipids, …

Gas-Phase Adsorption Of Dimethyl Methylphosphonate Over Ce(Oh)4@Pim-1 Composites Prepared Via Matrix Incorporation And Surface Coating Methods, Sukanta K. Mondal, Peter O. Aina, Ali A. Rownaghi, Fateme Rezaei

Chemical and Biochemical Engineering Faculty Research & Creative Works

This Study Investigated the Potential of Polymer of Intrinsic Microporosity (PIM-1) and Ce(OH)4@PIM-1 Composites for Adsorption of the Nerve Agent Simulant, Dimethyl Methylphosphonate (DMMP). through Experimental Investigations It Was Demonstrated that These Composite Adsorbents Exhibit Excellent Gas-Phase DMMP Adsorption Performance, with High Uptake Capacities and Relatively Fast Kinetics. This Study Further Examined the Effect of Two Composite's Preparation Methods, Namely Matrix Incorporation and Surface Coating, on the DMMP Adsorption Performance of Ce(OH)4@PIM-1. the Results Revealed that Coating of Ce(OH)4 on the PIM-1 Surface Gives Rise to Faster Adsorption Kinetics Than its Incorporation into the Polymer Matrix at Fixed 30 Wt …

Liposomes-Encapsulating Double-Stranded Nucleic Acid (Poly I:C) For Head And Neck Cancer Treatment, Vidit Singh, Anna Chernatynskaya, Lin Qi, Hsin Yin Chuang, Tristan Cole, Vimalin Mani Jeyalatha, Lavanya Bhargava, W. Andrew Yeudall, Laszlo Farkas, Hu Yang

Chemical and Biochemical Engineering Faculty Research & Creative Works

Polyriboinosinic acid-polyribocytidylic acid (Poly I:C) serves as a synthetic mimic of viral double-stranded dsRNA, capable of inducing apoptosis in numerous cancer cells. Despite its potential, therapeutic benefits, the application of Poly I:C has been hindered by concerns regarding toxicity, stability, enzymatic degradation, and undue immune stimulation, leading to autoimmune disorders. To address these challenges, encapsulation of antitumor drugs within delivery systems such as cationic liposomes is often employed to enhance their efficacy while minimizing dosages. In this study, we investigated the potential of cationic liposomes to deliver Poly I:C into the Head and Neck 12 (HN12) cell line to induce …

Novel Modified Polyethersulfone High Temperature And Low Humidity Fuel Cell Membrane: Experimental And Simulation Study, Mohammed K. Al Mesfer, Muthanna H. Al-Dahhan, Mohd Danish, Mumtaj Shah

Chemical and Biochemical Engineering Faculty Research & Creative Works

The Present Study Focuses on Synthesizing a High-Temperature Stable Membrane Working under Low Relative Humidity (RH) by Aminating the Traditional Polyethersulfone Polymer with Aniline for Fuel Cell Applications. a Condensed-Phase Optimized Molecular Potentials for Atomistic Simulation Studies Force Field-Based Molecular Dynamics Simulation Was Used to Explore the Microscopic Properties and Transport of Water and Hydronium (H3O+) Ions Across the Electrolyte at Varied Temperatures and RHs. COMSOL Calculates Oxygen and Hydrogen Concentrations after Examining the Polymer–ion Interaction with the Radial Distribution Function (RDF). the High H3O+ Diffusion Coefficient of the Aniline-Treated Membrane Shows the Benefit of the Modification. the RDF Confirmed …

Robust Triso-Fueled Pebble Identification By Digit Recognition, Roshan Kenia, Jihane Mendil, Ahmed Jasim, Muthanna Al-Dahhan, Zhaozheng Yin

Chemical and Biochemical Engineering Faculty Research & Creative Works

Nuclear Power Plays a Vital Role in Providing Reliable and Clean Energy to Fulfill Increasing Demands in Electricity Worldwide. It Continues to Be an Essential Source of National Power Supply as Growing Concerns About Fossil Fuel Depletion, Global Warming, and Emissions Require Utilizing Sustainable Energy Sources. One Area Contributing to the Growth of Nuclear Power is the Development of Reactors that Have Enhanced Protection and Security, Thermal Efficiency, and Design. Reactor Efficiency Can Be Studied by the Burnup that Occurs When a TRISO-Fueled Pebble is Inserted into the Nuclear Core and Subsequently Removed. the Levels of Burnup Are Measured based …

Flow Regimes In Bubble Columns With And Without Internals: A Review, Ayat N. Mahmood, Amer A. Abdulrahman, Laith S. Sabri, Abbas J. Sultan, Hasan Shakir Majdi, Muthanna H. Al-Dahhan

Chemical and Biochemical Engineering Faculty Research & Creative Works

Hydrodynamics characterization in terms of flow regime behavior is a crucial task to enhance the design of bubble column reactors and scaling up related methodologies. This review presents recent studies on the typical flow regimes established in bubble columns. Some effort is also provided to introduce relevant definitions pertaining to this field, namely, that of "void fraction" and related (local, chordal, cross-sectional and volumetric) variants. Experimental studies involving different parameters that affect design and operating conditions are also discussed in detail. In the second part of the review, the attention is shifted to cases with internals of various types (perforated …

Thermal Decomposition And Kinetic Parameters Of Three Biomass Feedstocks For The Performance Of The Gasification Process Using A Thermogravimetric Analyzer, Rania Almusafir, Joseph D. Smith

Chemical and Biochemical Engineering Faculty Research & Creative Works

Thermogravimetric analysis (TGA) is a powerful technique and useful method for characterizing biomass as a non-conventional fuel. A TGA apparatus has been utilized to experimentally investigate the impact of biomass feedstock diversity on the performance of the gasification of hardwood (HW), softwood (SW) pellets, and refuse-derived fuel (RDF) materials. The solid conversion rate and the volatile species formation rate have been estimated to quantify the rates of devolatilization for each material. In addition, the combustion kinetic characteristics of the three biomass feedstocks were investigated using TGA at different heating rates, and a thermal kinetic analysis was conducted to describe the …

Effect Of Various Irrigation Protocols And Antioxidant Application On Bonding Performance Of Two Adhesive Systems To Coronal Dentin, Nada Omar, Haidy N. Salem, Ahmed Abdou, Lamiaa M. Moharam

Chemical and Biochemical Engineering Faculty Research & Creative Works

Background: The aim was to evaluate the effect of different irrigation protocols and antioxidants application on the shear bond strength (SBS) of two different adhesive systems to deep coronal dentin at different temperature. Material and Methods: One hundred and twenty human premolar teeth were cut longitudinally in two halves, then the prepared specimens were allocated into four main groups according to the irrigation protocols; Distilled water (control), Sodium hypochlorite (NaOCl) + Ethylenediamine Tetra-acetic Acid (EDTA), and NaOCl + Editronate (HEDP), two subgroups according to irrigation solutions temperature; 4°C and 37°C, two divisions according to grape seed extract (GSE) application (with …

Molecular Imaging Nanoprobes And Their Applications In Atherosclerosis Diagnosis, Huari Kou, Hu Yang

Chemical and Biochemical Engineering Faculty Research & Creative Works

Molecular imaging has undergone significant development in recent years for its excellent ability to image and quantify biologic processes at cellular and molecular levels. Its application is of significance in cardiovascular diseases, particularly in diagnosing them at early stages. Atherosclerosis is a complex, chronic, and progressive disease that can lead to serious consequences such as heart strokes or infarctions. Attempts have been made to detect atherosclerosis with molecular imaging modalities. Not only do imaging modalities develop rapidly, but research of relevant nanomaterials as imaging probes has also been increasingly studied in recent years. This review focuses on the latest developments …

Injectable Dendrimer Hydrogel Delivers Melphalan In Both Conjugated And Free Forms For Retinoblastoma, Remy C. Cooper, Juan Wang, Hu Yang

Chemical and Biochemical Engineering Faculty Research & Creative Works

We report the successful synthesis of an injectable dendrimer hydrogel (DH) carrying melphalan, a clinical drug for retinoblastoma treatment, in both conjugated and free forms. Polyamidoamine (PAMAM) dendrimer generation 5 (G5) is surface-modified with an acid-sensitive acetal-dibenzocyclooctyne linker and then undergoes azide-alkyne cycloaddition with melphalan-PEG-N3 conjugate to form G5-acetal-melphalan. During the DH gelation between G5-acetal-melphalan and PEG-diacrylate, free melphalan is added, resulting in a hydrogel (G5-acetal-melphalan-DH/melphalan) that carries the drug in both conjugated and free forms. Melphalan is slowly released from G5-acetal-melphalan-DH/melphalan, with the conjugated melphalan released more quickly at pH 5.3 due to acid-triggered acetal bond cleavage. The formulation's …

Thermal Management Of Adsorption-Based Biogas Upgrading Systems Via Incorporation Of Phase-Change Materials, Kyle Newport, Khaled Baamran, Ali A. Rownaghi, Fateme Rezaei

Chemical and Biochemical Engineering Faculty Research & Creative Works

Thermal management of adsorption columns is necessary to maintain their effectiveness while reducing the energy requirements of the overall separation process. In this work, we aimed at investigating the suitability of blending adsorbents with phase-change materials (PCMs) to adjust the thermal profile of a biogas upgrading column. A commercially available PCM (Nextek 28D) in quantities of 10, 20, and 30 wt. % was blended with zeolite 13X in two configurations, namely, traditional pellets and 3D-printed monoliths. The use of different structures allows for better analysis of thermal profiles and assessment of the effectiveness of the PCM in a packed bed …