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The Contribution Of Missouri River Reservoir Side-Channel And Floodplain Habitats To Mainstem Fish Populations: The Effects Of Losing Connectivity Between Hipple Lake And Lake Sharpe, William Joseph Radigan

Electronic Theses and Dissertations

Catastrophic flooding of the Missouri River in 2011 has had lasting effects on floodplain habitats (i.e. floodplain lakes) and side-channel habitats (e.g. canals, side-channel embayments, stilling basins, and tributaries) in Lake Sharpe, SD. Floodplain and side-channel habitats are rare habitat in Lake Sharpe, a mainstem Missouri River reservoir, and are thought to be crucial habitat for prey and sport fish. Hipple Lake, the only warm-water floodplain embayment in Lake Sharpe, is in danger of losing connectivity to the reservoir because of sedimentation resulting from the 2011 flood. To evaluate Hipple Lake’s natal and adult contribution to Lake Sharpe’s fishery, otolith …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2016, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Nisse Goldberg, Radha Pyati, Peter Bacopoulos, Anthony Ouellette, Gretchen Bielmyer-Fraser, An-Phong Le, Ray Oldakowski

State of the River Report

No abstract provided.

Fishing Diseased Abalone To Promote Yield And Conservation, Tal Ben-Horin, Kevin D. Lafferty, Gorka Bidegain, Hunter S. Lenihan

United States Geological Survey: Staff Publications

Past theoretical models suggest fishing disease-impacted stocks can reduce parasite transmission, but this is a good management strategy only when the exploitation required to reduce transmission does not overfish the stock. We applied this concept to a red abalone fishery so impacted by an infectious disease (withering syndrome) that stock densities plummeted and managers closed the fishery. In addition to the non-selective fishing strategy considered by past disease- fishing models, we modelled targeting (culling) infected individuals,which is plausible in red abalone because modern diagnostic tools can determine infection without harming landed abalone and the diagnostic cost is minor relative to …

Zooplanktonic Community Dynamics Of The Minnesota River With An Ichthyoplankton Gear Comparison, Nathaniel Lederman

All Graduate Theses, Dissertations, and Other Capstone Projects

The Minnesota River, like many large rivers, has been functionally altered by human activities and climate change. The Minnesota Pollution Control Agency has designated 271 kilometers (50.3%) of the 539 kilometer Minnesota River as “biologically impaired.” However, assessing biological communities in large rivers is often difficult and limited to examination of upper trophic levels (e.g., piscivorous fishes). Few studies examined zooplanktonic communities, largely due to difficulties associated with sampling. Because of the need to improve assessment strategies for biological impairments in the Minnesota River, the zooplanktonic community, including crustaceous zooplankton, rotifers, macroinvertebrates, and ichthyoplankton was evaluated within an impaired and …

Effects Of Hydrology On The Growth And Recruitment Of Stream Fish In The Eastern Broadleaf Province Of Minnesota, Eric J. Krumm

All Graduate Theses, Dissertations, and Other Capstone Projects

Agricultural practices and urban development have altered streamflows within the Eastern Broadleaf Province of Minnesota. Stream-flow alteration can produce significant changes in native freshwater communities. Therefore, knowledge of streamflow effects on representative freshwater populations and communities within the province are needed to maintain ecological integrity. Fish community and population dynamics often display predictable responses to flow regimes, which can make fishes model organisms for examining flow-ecology relationships.

In lotic systems, annual variation in streamflow can influence the annual growth and recruitment of fishes. Understanding the growth and recruitment of fish populations is essential for management and conservation efforts. Growth can …

Department Of Fisheries Annual Report To Parliament 2015/16, Government Of Western Australia Department Of Fisheries

Department of Fisheries annual reports

This annual report provides an overview of the Department and its operations for the financial year ended 30 June 2016. It has been prepared in accordance with the requirements of the Financial Management Act 2006, the Fish Resources Management Act 1994 and the Public Sector Commission’s Annual reporting framework – 2015/16 reporting year.

Ecology Of Largemouth Bass In An Aging Reservoir: Implications For Creating A Trophy Largemouth Bass Fishery, Jason Breeggemann

Electronic Theses and Dissertations

There are an estimated 3-9 million small reservoirs and nearly 1,000 large reservoirs in the United States. Most of these reservoirs were built several decades ago and are experiencing symptoms of reservoir aging, including loss of habitat, sedimentation, and decreased fishery production. Furthermore, over the last several decades, there has been an increasing interest among anglers for high quality, trophy fisheries. However, little is known about exactly how the reservoir aging process affects the ecology and especially growth potential of Largemouth Bass, particularly under potential climate change scenarios. Grand Lake in TX is a 45ha ageing reservoir that was built …

Biological Activity Exceeds Biogenic Structure In Influencing Sediment Nitrogen Cycling In Experimental Oyster Reefs, Ashley R. Smyth, Nathan R. Geraldi, Suzanne P. Thompson, Michael F. Piehler

VIMS Articles

Oysters are estuarine ecosystem engineers, in that their physical structure and biological function affect ecosystem processes such as organic matter and nutrient cycling. Oysters deliver material to the sediments through biodeposition and sedimentation caused by modification of flow around the reef. We conducted an experiment to distinguish between biotic effects and physical structure of oyster reefs on sediment nitrogen cycling. Experimental reefs consisting of live oysters, oyster shells alone and mudflats (controls) were sampled for a period of 4 wk for sediment organic matter, C and N content and fluxes of nitrogen (NH4 +, NOX and N2) and oxygen (O2). …

Using Lidar Elevation Data To Develop A Topobathymetric Digital Elevation Model For Sub-Grid Inundation Modeling At Langley Research Center, Jon Derek Loftis, Harry V. Wang, Rj Deyoung, Wb Ball

VIMS Articles

Technological progression in light detection and ranging permits the production of highly detailed digital elevation models, which are useful in sub-grid hydrodynamic modeling applications. Sub-grid modeling technology is capable of incorporating these high-resolution lidar-derived elevation measurements into the conventional hydrodynamic modeling framework to resolve detailed topographic features for inclusion in a hydrological transport model for runoff simulations. The horizontal resolution and vertical accuracy of the digital elevation model is augmented via inclusion of these lidar elevation values on a nested 5-m sub-grid within each coarse computational grid cell. This aids in resolving ditches and overland drainage infrastructure at Langley Research …

Levels, Sources And Chemical Fate Of Persistent Organic Pollutants In The Atmosphere And Snow Along The Western Antarctic Peninsula, Ma Khairy, Jl Luek, R Dickhut, R Lohmann

VIMS Articles

The Antarctic continent is among the most pristine regions; yet various organic contaminants have been measured there routinely. Air and snow samples were collected during the austral spring (October November, 2010) along the western Antarctic Peninsula and analyzed for organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) to assess the relative importance of long-range transport versus local primary or secondary emissions. Highest concentrations of PCBs, PBDEs and DDTs were observed in the glacier's snow sample, highlighting the importance of melting glaciers as a possible secondary source of legacy pollutants to the Antarctic. In the atmosphere, contaminants were …

Saltmarsh Plant Responses To Eutrophication, David S. Johnson, Rs Warren, La Deegan, Tj Mozdzer

VIMS Articles

In saltmarsh plant communities, bottom-up pressure from nutrient enrichment is predicted to increase productivity, alter community structure, decrease biodiversity, and alter ecosystem functioning. Previous work supporting these predictions has been based largely on short-term, plot-level (e.g., 1-300 m(2)) studies, which may miss landscape-level phenomena that drive ecosystem-level responses. We implemented an ecosystem-scale, nine-year nutrient experiment to examine how saltmarsh plants respond to simulated conditions of coastal eutrophication. Our study differed from previous saltmarsh enrichment studies in that we applied realistic concentrations of nitrate (70-100 mu M NO3-), the most common form of coastal nutrient enrichment, via tidal water at the …

Water Residence Time In Chesapeake Bay For 1980-2012, Jb Du, Jian Shen

VIMS Articles

Concerns have grown over the increase of nutrients and pollutants discharged into the estuaries and coastal seas. The retention and export of these materials inside a system depends on the residence time (RT). A long-term simulation of time-varying RT of the Chesapeake Bay was conducted over the period from 1980 to 2012. The 33-year simulation results show that the mean RT of the entire Chesapeake Bay system ranges from 110 to 264 days, with an average value of 180 days. The RT was larger in the bottom layers than in the surface layers due to the persistent stratification and estuarine …

An Individual-Based Approach To Year-Class Strength Estimation, S Thanassekos, Rj Latour, Mary C. Fabrizio

VIMS Articles

Estimating year-class strength-the number of larvae hatched in a given year-from survey data is key to investigating fish population dynamics. Year-class strength can be estimated from catch-at-age data using catch curves. In practice, most catch-curve assumptions are violated, which can result in spurious estimates of year-class strength. Among the simplifying assumptions is that pooling individuals into annual age-classes provides a representation of the population age structure that is adequate for estimating mortality. This oversimplification is unnecessary when age data are available at finer scales, and can lead to biased results. We present a new method to estimate past year-class strength …

Beyond The Benchtop And The Benthos: Dataset Management Planning And Design For Time Series Of Ocean Carbonate Chemistry Associated With Durafet (R)-Based Ph Sensors, Emily B. Rivest, M O'Brien, L Kapsenberg, Cc Gotschalk, Ca Blanchette, U Hoshijima, Ge Hofmann

VIMS Articles

To better understand the impact of ocean acidification on marine ecosystems, an important ongoing research priority for marine scientists is to characterize present-day pH variability. Following recent technological advances, autonomous pH sensor deployments in shallow coastal marine environments have revealed that pH dynamics in coastal oceans are more variable in space and time than the discrete, open-ocean measurements that are used for ocean acidification projections. Data from these types of deployments will benefit the research community by facilitating the improved design of ocean acidification studies as well as the identification or evaluation of natural and human-influenced pH variability. Importantly, the …

Ahr-Related Activities In A Creosote-Adapted Population Of Adult Atlantic Killifish, Fundulus Heteroclitus, Two Decades Post-Epa Superfund Status At The Atlantic Wood Site, Portsmouth, Va Usa, Jv Wojdylo, Wolfgang K. Vogelbein, Lj Bain, Cd Rice

VIMS Articles

Atlantic killifish, Fundulus heteroclitus, are adapted to creosote-based PAHs at the US EPA Superfund site known as Atlantic Wood (AW) on the southern branch of the Elizabeth River, VA USA. Subsequent to the discovery of the AW population in the early 1990s, these fish were shown to be recalcitrant to CYP1A induction by PAHs under experimental conditions, and even to the time of this study, killifish embryos collected from the AW site are resistant to developmental deformities typically associated with exposure to PAHs in reference fish. Historically, however, 90 +% of the adult killifish at this site have proliferative hepatic …

Marine Phytophthora Species Can Hamper Conservation And Restoration Of Vegetated Coastal Ecosystems, Ll Govers, Wam In 'T Veid, Jp Meffert, Tj Bouma, Pcj Van Rijswick, Jht Heusinkveld, R J. Orth, Mm Van Katwijk, T Van Der Heide

VIMS Articles

Phytophthora species are potent pathogens that can devastate terrestrial plants, causing billions of dollars of damage yearly to agricultural crops and harming fragile ecosystems worldwide. Yet, virtually nothing is known about the distribution and pathogenicity of their marine relatives. This is surprising, as marine plants form vital habitats in coastal zones worldwide (i.e. mangrove forests, salt marshes, seagrass beds), and disease may be an important bottleneck for the conservation and restoration of these rapidly declining ecosystems. We are the first to report on widespread infection of Phytophthora and Halophytophthora species on a common seagrass species, Zostera marina (eelgrass), across the …

Complex Coastal Change In Response To Autogenic Basin Infilling: An Example From A Sub-Tropical Holocene Strandplain, Christopher J. Hein, Dm Fitzgerald, Lhp De Souza, Iy Georgiou, Iv Buynevich, Et Al.

VIMS Articles

Thick bay-fill sequences that often culminate in strandplain development serve as important sedimentary archives of land-ocean interaction, although distinguishing between internal and external forcings is an ongoing challenge. This study employs sediment cores, ground-penetrating radar surveys, radiocarbon dates, palaeogeographic reconstructions and hydrodynamic modelling to explore the role of autogenic processes - notably a reduction in wave energy in response to coastal embayment infilling - in coastal evolution and shoreline morphodynamics. Following a regional 2 to 4m highstand at ca 58ka, the 75km(2) Tijucas Strandplain in southern Brazil built from fluvial sediments deposited into a semi-enclosed bay. Holocene regressive deposits are …

Effects Of Sediment And Salinity On The Growth And Competitive Abilities Of Three Submersed Macrophytes, Erin C. Shields, Ken Moore

VIMS Articles

Submersed macrophytes are generally found in multispecies beds, with the dominance of individual species varying in both space and time. In estuarine environments, these plants can grow across a range of environmental conditions which may alter species interactions. Three species common to the Chesapeake Bay region, Vallisneria americana (wild celery), Heteranthera dubia (water stargrass), and Stuckenia pectinata (sago pondweed), were planted in a microcosm designed to test their growth and interactions (relative yielding) under a range of conditions of salinity (0, 5, or 10), sediment type (mud or sand), and species combinations. H. dubia was most sensitive to elevated salinity, …

Virtualspecies, An R Package To Generate Virtual Species Distributions, B Leroy, Cn Meynard, C Bellard, F Courchamp

VIMS Articles

virtualspecies is a freely available package for R designed to generate virtual species distributions, a procedure increasingly used in ecology to improve species distribution models. This package combines the existing methodological approaches with the objective of generating virtual species distributions with increased ecological realism. The package includes 1) generating the probability of occurrence of a virtual species from a spatial set of environmental conditions (i.e. environmental suitability), with two different approaches; 2) converting the environmental suitability into presence-absence with a probabilistic approach; 3) introducing dispersal limitations in the realised virtual species distributions and 4) sampling occurrences with different biases in …

Biodiversity Enhances Reef Fish Biomass And Resistance To Climate Change, Je Duffy, Js Lefcheck, Rochelle Stuart-Smith, Sa Navarrete, Gj Edgar

VIMS Articles

Fishes are the most diverse group of vertebrates, play key functional roles in aquatic ecosystems, and provide protein for a billion people, especially in the developing world. Those functions are compromised by mounting pressures on marine biodiversity and ecosystems. Because of its economic and food value, fish biomass production provides an unusually direct link from biodiversity to critical ecosystem services. We used the Reef Life Survey's global database of 4,556 standardized fish surveys to test the importance of biodiversity to fish production relative to 25 environmental drivers. Temperature, biodiversity, and human influence together explained 47% of the global variation in …