Biomedical Engineering and Bioengineering Commons^™

Design Of Medical Devices For Diagnostics In The Gastrointestinal System, Charles R. Welch

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

This thesis presents the design, controls, and testing of two systems: a novel colonoscope locomotion design for diagnostics, and a biosensor capsule that implants a sensor in the small intestine. Each system requires special design considerations for use in the gastrointestinal system.

Colonoscopy procedures are recommended as a screening for colon cancer and related conditions after the age of 50. The need for an improved colonoscope that reduces the colonoscopy time and patient discomfort is apparent. The semi-autonomous device presented here could likely reduce the colonoscopy procedure time by allowing the physician to focus more on the diagnosis and less …

A Roadmap To Safe And Reliable Engineered Biological Nano-Communication Networks, Justin W. Firestone

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Synthetic biology has the potential to benefit society with novel applications that can improve soil quality, produce biofuels, grow customized biological tissue, and perform intelligent drug delivery, among many other possibilities. Engineers are creating techniques to program living cells, inserting new logic, and leveraging cell-to-cell communication, which result in changes to a cell's core functionality. Using these techniques, we can now create synthetic biological organisms (SBOs) with entirely new (potentially unseen) behaviors, which, similar to silicon devices, can sense, actuate, perform computation, and interconnect with other networks at the nanoscale level. SBOs are programmable evolving entities, and can be likened …

Spinal Implant Design And Subsidence: Finite Element Analysis, Samuel G. Stanaford, Timothy L. Norman

The Research and Scholarship Symposium (2013-2019)

Artificial disc replacement and intervertebral fusion devices are alternatives to pain and spinal instability when disc failure occurs. Understanding the mechanical performance of these devices can be achieved by long term clinical studies, costly experimental studies or through numeral analysis using finite elements. This study was conducted to study the subsidence, or vertical motion of the artificial disc or fusion device into adjacent vertebral body segments. Specifically, the effect of implant size, shape and sagittal profile was studied using a finite element model of the L4/L5 human spine using ABAQUS finite element software. Results compared the stress state and subsidence …

Spinal Implant Design And Subsidence, Schuyler E. Price, Lorrin Schoeneweis, Hannah Steele, Matthew Shomper, Timothy L. Norman

The Research and Scholarship Symposium (2013-2019)

A spinal implant may be used in people who have diseased or injured intervertebral discs pushing against their spinal cord and nerves, causing them loss of sensation due to nerve impingement. Patients who have not found relief through non-surgical means may require a discectomy, which removes the disc and relieves the pressure. There are several ways to then fill the resulting gap which include fusion devices, artificial disc replacement (ADR) devices, or bone grafts. Our study focused on the first two mechanical options.

Subsidence, or the vertical movement of the device into the adjacent vertebral bodies, is an often reported …

An Algorithm For Constrained One-Step Inversion Of Spectral Ct Data, Rina Foygel Barber, Emil Y. Sidky, Taly Gilat Schmidt, Xiaochuan Pan

Biomedical Engineering Faculty Research and Publications

We develop a primal-dual algorithm that allows for one-step inversion of spectral CT transmission photon counts data to a basis map decomposition. The algorithm allows for image constraints to be enforced on the basis maps during the inversion. The derivation of the algorithm makes use of a local upper bounding quadratic approximation to generate descent steps for non-convex spectral CT data discrepancy terms, combined with a new convex-concave optimization algorithm. Convergence of the algorithm is demonstrated on simulated spectral CT data. Simulations with noise and anthropomorphic phantoms show examples of how to employ the constrained one-step algorithm for spectral CT …

A Novel Minimally Invasive Tumour Localization Device, Doran Avivi

Electronic Thesis and Dissertation Repository

Lung cancer is one of the leading causes of death, by cancer. The usual treatment is surgical resection of tumours. However, patients who are weak or have poor pulmonary function are deemed unfit for surgery. For these patients, a minimally-invasive approach is desired. A major problem associated with minimally-invasive approaches is tumour localization in real time and accurate measurement of tool--tissue forces.

This thesis describes the design, analysis, manufacturing and validation of a minimally-invasive instrument for tumour localization, named Palpatron. The instrument has an end effector that is able to support two previously designed jaws, one containing an ultrasound sensor …

Gait And Tremor Monitoring System For Patients With Parkinson’S Disease Using Wearable Sensors, Shyam Vignesh Perumal

USF Tampa Graduate Theses and Dissertations

Typically, a Parkinson’s disease (PD) patient would display instances of tremor and bradykinesia (slowness of movement) at an early stage of the disease and later develop gait disturbances and postural instability. So, it is important to measure the tremor occurrences in subjects to detect the onset of PD. Also, it is equally essential to monitor the gait impairments that the patient displays, as the order at which the PD symptoms appear in subjects vary from one to another.

The primary goal of this thesis is to develop a monitoring system for PD patients using wearable sensors. To achieve that objective, …

Markerless Radiostereogammetry Of The Shoulder Joint In Humans: Comparisons Of Scapulohumeral Kinematics Between Individuals With Healthy And Supraspinatus-Impaired Shoulders, Ashley N. Hannon

Electronic Thesis and Dissertation Repository

The purpose of this collection of studies was to further develop the knowledge of shoulder motion in order to better understand joint function through direct measurement of 3D scapulohumeral joint kinematics using a technique of high accuracy. Markerless, bi-planar fluoroscopic radiostereometric analysis using a generic shoulder model was developed in this thesis, reducing the amount of radiation exposure to subjects. The studies compared kinematic data of the scapulohumeral joint in six degrees of freedom with a precise, in-vivo measuring technique. Data were collected on young and older healthy individuals, individuals with a torn supraspinatus and post-surgical intervention.

Although this generic …

Arakniprint: 3d Printing Of Synthetic Spider Silk To Produce Biocompatible And Resorbable Biomaterials, Ashley Ruben, Brianne Bell, Chase Spencer, Craig Soelberg, Dan Gil, Thomas Harris, Richard Decker, Timothy A. Taylor, Randolph V. Lewis

Student Research Symposium

At $3.07 billion in 2013, the 3D printing industry was projected to reach $12.8 billion in 2018 and exceed $21 billion by 2020 (Wohlers and Caffrey, 2013). A lucrative part of this expanding industry includes printing biocompatible medical implants, devices, and tissue scaffolds. A common problem encountered with traditional devices, implants, and tissue scaffolds is that they are not unique to the patient and lack the necessary strength and biocompatibility. To answer these demands, customizable devices are being produced from patient medical scans and CAD designs using 3D printers. These printers traditionally use thermoplastics because of the ease with which …

Secretion Of Bioplastic Polymers From Methanotrophic Bacteria Grown Using Natural Gas, Chad L. Nielsen, Charles D. Miller

Student Research Symposium

Biodegradable bioplastics show promise as a replacement for traditional plastics. Cost of production due to the cost of feedstocks and separation/purification processes are the main obstacles to widespread use of bioplastics. The possibility of reducing these costs through using methane gas as a feedstock and genetically transforming a methanotrophic bacterium to secrete bioplastics was investigated through experimentation. The bacteria are a promising option for bioplastic production.

A Numerical Approach To Investigate The Influence Of Deformable Blockages On Blood Flow In An Elastic Vessel, Tai-Hsien Wu

Research and Creative Activities Poster Day

In this work, we presented a new numerical approach to study the deformation of blockages and fluid properties in an elastic blood vessel. In computational hemodynamics, only few of the current numerical models considered the elasticity of vessels, and those models were difficult to extend to other topics like the deformation of blockages in elastic blood vessels. In addition, the approach that we employed is especially effective on visualization. A validation for the present method is carried out by comparing the simulation results with a theoretical prediction of the deformation of the pulmonary blood vessel in a steady flow. Subsequently, …

Sustained Cell Differentiation Of 2d H9 Human Embryonic Stem Cells Into Mesenchymal Stem Cells, Hannah M. Christian

UCARE Research Products

This experiment consisted of the controlled differentiation of H9 embryonic stem cells to mesenchymal stem cells. Though this experiment was repeated twice and improvement was seen in these repetitions, the cells were only able to be partially differentiated. However, the morphology of the differentiated cells is similar to those of healthy adult mesenchymal stem cells.

The progression of the differentiation can be seen in the microscope slide photos below. Throughout the differentiation, there occurred a decrease in cell survival and reduction of cell growth, but an increase in mesenchymal stem cell morphology. Throughout the last week of the differentiation, very …

The Connectivity Domain: Analyzing Resting State Fmri Data Using Feature-Based Data-Driven And Model-Based Methods, Armin Iraji, Vince D. Calhoun, Natalie M. Wiseman, Esmaeil Davoodi-Bojd, Mohammad R. N. Avanaki, Zhifeng Kou

Biomedical Engineering Faculty Research Publications

Spontaneous fluctuations of resting state functional MRI (rsfMRI) have been widely used to understand the macro-connectome of the human brain. However, these fluctuations are not synchronized among subjects, which leads to limitations and makes utilization of first-level model-based methods challenging. Considering this limitation of rsfMRI data in the time domain, we propose to transfer the spatiotemporal information of the rsfMRI data to another domain, the connectivity domain, in which each value represents the same effect across subjects. Using a set of seed networks and a connectivity index to calculate the functional connectivity for each seed network, we transform data into …

Bending Stiffness In Cadaveric And Composite Long Bones Following Total Joint Replacement, Danielle Gehron, Anderson Adams Ms, Tatsuya Sueyoshi Md, Scott R. Small Ms

Rose-Hulman Undergraduate Research Publications

Several biomechanics studies have utilized commercially available replicate bone models as an alternative to cadaveric tissue specimens, in part due to their ease of handling and reduced expense. In an effort to validate the use of replicate bone specimens in biomechanics research, a number of studies have compared material properties of whole tibia and femur specimens to those of similar cadaveric specimens. Many of these validation studies have ascertained that the material properties of whole bone composite models fall within the range of those properties of cadaveric specimens, while offering reduced interspecimen variability. Current literature lacks, however, the direct comparison …

Biomarkers Used To Detect And Monitor Neurological Autoimmune Diseases, Robert Powers, Jay Reddy, Teklab Gebregiworgis, Chandirasegara Massilamany, Arunakumar Gangaplara, Zsolt Illes

Robert Powers Publications

Biomarkers of neurological autoimmune diseases are described, and methods of using such biomarkers also are described.

Autoimmune diseases arise from an inappropriate immune response by the body against Substances or tissues normally found in the body. Neurological autoimmune diseases are those autoimmune diseases that affect some aspect of the neurological system (e.g., the central nervous system or the peripheral nervous system). Biomarkers of one or more neu rological autoimmune diseases, especially those biomarkers that can be evaluated non-invasively, are useful in the art. Biomarkers of neurological autoimmune diseases are pro vided, and methods of using Such biomarkers also are pro …

Molecular Combing Of Dna Nanofibers And Comparison To Electrospinning, Tanner L. Buresh

UCARE Research Products

The goal of these experiments was to create DNA nanofibers through the method of molecular combing (MC) and then compare the MC fibers to fibers created with electrospinning (ES). The experiment was designed and initial samples were created. After confirming that the method would succeed in creating DNA fibers, several parametric studies were performed in order to optimize the experiment and create the most uniform fibers possible. The parametric studies were done on the following variables: substrate material, pH level of DNA solution, and DNA solution concentration. After completion of all experiments, it was determined that although fibers could be …

Under The Needle: Ergonomic Issues With Lethal Injection Protocols, Gabriella Hancock

Human Factors and Applied Psychology Student Conference

The institution of capital punishment represents one of the most contentious issues affecting societies today; and while the practice is only implemented in 58 countries, the controversy affects the world at large as over 60% of the human population lives in nations that condone the death penalty (Hali, 2015). In the United States, people who support capital punishment believe the practice to be an effective crime deterrent for potential criminals and therefore a prospective protective measure for law abiding citizens. Moreover, advocates defend their position by forwarding the argument that executions are ‘humane’; that use of lethal injection ensures that …

Registration And Segmentation Of Multimodality Images For Post Processing Of Skeleton In Preclinical Oncology Studies, Vineeth Radhakrishnan

Masters Theses

Advancements in medical imaging techniques provide biomedical researchers with quality anatomical and functional information inside preclinical subjects in the fields of cancer, osteopathic, cardiovascular, and neurodegenerative research. The throughput of the preclinical imaging studies is a critical factor which determines the pace of small animal medical research. The time involved in manual analysis of large amount of imaging data prior to data interpretation by the researcher, limits the number of studies in a time frame.

In the proposed solution, an automated image segmentation method was used to segment individual vertebrae in mice. Individual vertebrae of MOBY atlas were manually segmented …

Spring 2016 Biomedical Engineering Newsletter, Department Of Biomedical Engineering, Michigan Technological University

Department of Biomedical Engineering Newsletters

Table of Contents

• Focus on Cardiovascular Research
• BMES Rising Star Feng Zhao
• Magnetoelastic: Sensing more with less
• Portage Health/Michigan Tech Partnership
• Remembering Dr. Michael Neuman

Section Abstracts: Biomedical And General Engineering

Virginia Journal of Science

Abstracts of the Biomedical and General Engineering Section for the 94th Annual Virginia Academy of Science Meeting, May 18-20, 2016, at University of Mary Washington, Fredericksburg, VA.